1MMIA

E. coli dna polymerase beta subunit
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
366
structure length
366
Chain Sequence
MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords DNA polymerase III, beta chain
publication title Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III.
pubmed doi rcsb
source organism Escherichia coli
total genus 89
structure length 366
sequence length 366
chains with identical sequence B
ec nomenclature ec 2.7.7.7: DNA-directed DNA polymerase.
pdb deposition date 2002-09-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00712 DNA_pol3_beta DNA polymerase III beta subunit, N-terminal domain
A PF02767 DNA_pol3_beta_2 DNA polymerase III beta subunit, central domain
A PF02768 DNA_pol3_beta_3 DNA polymerase III beta subunit, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 1mmiA02
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 1mmiA03
3.10.150.10 Alpha Beta Roll DNA Polymerase III; Chain A, domain 2 DNA Polymerase III, subunit A, domain 2 1mmiA01
5AGUA 2POLA 3P16A 4N94A 1UNNA 4N99A 4MJQA 4OVHA 4PNUA 5AGVA 4PNWA 2AVTA 4PNVA 4K3QA 4TR6A 4K3SA 1VPKA 3L10A 3Q4KA 4MJPA 4N97A 4RKIA 4K3LA 5FRQA 3BEPA 3QSBA 3D1EA 3F1VA 4K3RA 4MJRA 4OVFA 1MMIA 3T0PA 4S3IA 2AWAA 4N95A 4K3MA 4N98A 3L0WA 3PGEB 3QSBB 5AH2A 3L0XA 4TR8A 5FVEA 3D1FA 3PWEA 1JQLA 4TRTA 1OK7A 4N96A 5AH4A 1JQJA 4TR7A 3RB9A 4K3KA 4N9AA 3Q4JA 4OVGA 4TSZA 3D1GA 3Q4LA 4K74A 4K3OA 2XURA 4K3PA
chains in the Genus database with same CATH superfamily
5AGUA 2POLA 3P16A 4N94A 1UNNA 4N99A 4MJQA 4OVHA 4PNUA 5AGVA 4PNWA 2AVTA 4PNVA 4K3QA 4TR6A 4K3SA 1VPKA 3L10A 3Q4KA 4MJPA 4N97A 4RKIA 4K3LA 5FRQA 3PGEA 3QSBA 3D1EA 3F1VA 3BEPA 4K3RA 4MJRA 3L10B 1MMIA 4OVFA 4S3IA 3T0PA 2AWAA 4N95A 4K3MA 4N98A 3L0WA 3PGEB 3QSBB 5AH2A 3L0XA 4TR8A 5FVEA 3D1FA 3PWEA 1JQLA 4TRTA 1OK7A 4N96A 5AH4A 1JQJA 4TR7A 3RB9A 3L0WB 4K3KA 4N9AA 3L0XB 3Q4JA 4OVGA 4TSZA 3D1GA 3Q4LA 4K74A 4K3OA 2XURA 4K3PA
chains in the Genus database with same CATH topology
5AGUA 2POLA 3P16A 4N94A 1UNNA 4N99A 4MJQA 4OVHA 4PNUA 5AGVA 4PNWA 2AVTA 4PNVA 4K3QA 4TR6A 4K3SA 1VPKA 3L10A 3Q4KA 4MJPA 4N97A 4RKIA 4K3LA 5FRQA 3BEPA 3QSBA 3D1EA 3F1VA 4K3RA 4MJRA 4OVFA 1MMIA 3T0PA 4S3IA 2AWAA 4N95A 4K3MA 4N98A 3L0WA 3PGEB 3QSBB 5AH2A 3L0XA 4TR8A 5FVEA 3D1FA 3PWEA 1JQLA 4TRTA 1OK7A 4N96A 5AH4A 1JQJA 4TR7A 3RB9A 4K3KA 4N9AA 3Q4JA 4OVGA 4TSZA 3D1GA 3Q4LA 4K74A 4K3OA 2XURA 4K3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AGU A;  2POL A;  3P16 A;  4N94 A;  1UNN A;  4N99 A;  4MJQ A;  4OVH A;  4PNU A;  5AGV A;  4PNW A;  2AVT A;  4PNV A;  4K3Q A;  4TR6 A;  4K3S A;  1VPK A;  3L10 A;  3Q4K A;  4MJP A;  4N97 A;  4RKI A;  4K3L A;  5FRQ A;  3BEP A;  3QSB A;  3D1E A;  3F1V A;  4K3R A;  4MJR A;  4OVF A;  1MMI A;  3T0P A;  4S3I A;  2AWA A;  4N95 A;  4K3M A;  4N98 A;  3L0W A;  3PGE B;  3QSB B;  5AH2 A;  3L0X A;  4TR8 A;  5FVE A;  3D1F A;  3PWE A;  1JQL A;  4TRT A;  1OK7 A;  4N96 A;  5AH4 A;  1JQJ A;  4TR7 A;  3RB9 A;  4K3K A;  4N9A A;  3Q4J A;  4OVG A;  4TSZ A;  3D1G A;  3Q4L A;  4K74 A;  4K3O A;  2XUR A;  4K3P A; 
#chains in the Genus database with same CATH topology
 5AGU A;  2POL A;  3P16 A;  4N94 A;  1UNN A;  4N99 A;  4MJQ A;  4OVH A;  4PNU A;  5AGV A;  4PNW A;  2AVT A;  4PNV A;  4K3Q A;  4TR6 A;  4K3S A;  1VPK A;  3L10 A;  3Q4K A;  4MJP A;  4N97 A;  4RKI A;  4K3L A;  5FRQ A;  3PGE A;  3QSB A;  3D1E A;  3F1V A;  3BEP A;  4K3R A;  4MJR A;  3L10 B;  1MMI A;  4OVF A;  4S3I A;  3T0P A;  2AWA A;  4N95 A;  4K3M A;  4N98 A;  3L0W A;  3PGE B;  3QSB B;  5AH2 A;  3L0X A;  4TR8 A;  5FVE A;  3D1F A;  3PWE A;  1JQL A;  4TRT A;  1OK7 A;  4N96 A;  5AH4 A;  1JQJ A;  4TR7 A;  3RB9 A;  3L0W B;  4K3K A;  4N9A A;  3L0X B;  3Q4J A;  4OVG A;  4TSZ A;  3D1G A;  3Q4L A;  4K74 A;  4K3O A;  2XUR A;  4K3P A; 
#chains in the Genus database with same CATH homology
 5AGU A;  2POL A;  3P16 A;  4N94 A;  1UNN A;  4N99 A;  4MJQ A;  4OVH A;  4PNU A;  5AGV A;  4PNW A;  2AVT A;  4PNV A;  4K3Q A;  4TR6 A;  4K3S A;  1VPK A;  3L10 A;  3Q4K A;  4MJP A;  4N97 A;  4RKI A;  4K3L A;  5FRQ A;  3BEP A;  3QSB A;  3D1E A;  3F1V A;  4K3R A;  4MJR A;  4OVF A;  1MMI A;  3T0P A;  4S3I A;  2AWA A;  4N95 A;  4K3M A;  4N98 A;  3L0W A;  3PGE B;  3QSB B;  5AH2 A;  3L0X A;  4TR8 A;  5FVE A;  3D1F A;  3PWE A;  1JQL A;  4TRT A;  1OK7 A;  4N96 A;  5AH4 A;  1JQJ A;  4TR7 A;  3RB9 A;  4K3K A;  4N9A A;  3Q4J A;  4OVG A;  4TSZ A;  3D1G A;  3Q4L A;  4K74 A;  4K3O A;  2XUR A;  4K3P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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