1MNYA

Dimethyl propionate ester heme-containing cytochrome b5
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
94
structure length
94
Chain Sequence
DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Dimethyl propionate ester heme-containing cytochrome b5: structure and stability.
pubmed doi rcsb
molecule tags Electron transport
source organism Rattus norvegicus
molecule keywords cytochrome b5
total genus 15
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 2002-09-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1mnyA00
1F04A 1SH4A 1AW3A 1F03A 1ICCA 1IETA 1I8CA 1M20A 3X34A 2M33A 1CYOA 1J0QA 1MJ4A 1B5AA 1M2MA 1B5BA 1JEXA 3X33A 3LF5A 1U9MA 1ES1A 1B5MA 2IBJA 1X3XA 1M2IA 1T0GA 1LR6A 4X8YA 1I87A 4HINA 1J03A 1LJ0A 3X35A 3MUSA 4B8NA 1M59A 1I5UA 1FCBA 2I96A 2OZ0A 3OZZB 1DO9A 1MNYA 1AWPA 1U9UA 3NERA 4HILA 2AXXA 1HKOA 1EHBA 1NX7A 1BLVA 1AXXA 1EUEA 3X32A 1BFXA 1LDCA 1CXYA 1KBIA 1LCOA 1SOXA 1IEUA 1IB7A 3KS0A 2KEOA 1AQAA 1LQXA 1LTDA 2I89A
chains in the Genus database with same CATH superfamily
1F04A 1SH4A 1AW3A 1F03A 1ICCA 1IETA 1I8CA 1M20A 3X34A 2M33A 1CYOA 1J0QA 1MJ4A 1B5AA 1M2MA 1B5BA 1JEXA 3X33A 3LF5A 1U9MA 1ES1A 1B5MA 2IBJA 1X3XA 1M2IA 1T0GA 1LR6A 4X8YA 1I87A 4HINA 1J03A 1LJ0A 3X35A 3MUSA 4B8NA 1M59A 1I5UA 1FCBA 2I96A 2OZ0A 3OZZB 1DO9A 1MNYA 1AWPA 1U9UA 3NERA 4HILA 2AXXA 1HKOA 1EHBA 1NX7A 1BLVA 1AXXA 1EUEA 3X32A 1BFXA 1LDCA 1CXYA 1KBIA 1LCOA 1SOXA 1IEUA 1IB7A 3KS0A 2KEOA 1AQAA 1LQXA 1LTDA 2I89A
chains in the Genus database with same CATH topology
1F04A 1SH4A 1AW3A 1F03A 1ICCA 1IETA 1I8CA 1M20A 3X34A 2M33A 1CYOA 1J0QA 1MJ4A 1B5AA 1M2MA 1B5BA 1JEXA 3X33A 3LF5A 1U9MA 1ES1A 1B5MA 2IBJA 1X3XA 1M2IA 1T0GA 1LR6A 4X8YA 1I87A 4HINA 1J03A 1LJ0A 3X35A 3MUSA 4B8NA 1M59A 1I5UA 1FCBA 2I96A 2OZ0A 3OZZB 1DO9A 1MNYA 1AWPA 1U9UA 3NERA 4HILA 2AXXA 1HKOA 1EHBA 1NX7A 1BLVA 1AXXA 1EUEA 3X32A 1BFXA 1LDCA 1CXYA 1KBIA 1LCOA 1SOXA 1IEUA 1IB7A 3KS0A 2KEOA 1AQAA 1LQXA 1LTDA 2I89A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1F04 A;  1SH4 A;  1AW3 A;  1F03 A;  1ICC A;  1IET A;  1I8C A;  1M20 A;  3X34 A;  2M33 A;  1CYO A;  1J0Q A;  1MJ4 A;  1B5A A;  1M2M A;  1B5B A;  1JEX A;  3X33 A;  3LF5 A;  1U9M A;  1ES1 A;  1B5M A;  2IBJ A;  1X3X A;  1M2I A;  1T0G A;  1LR6 A;  4X8Y A;  1I87 A;  4HIN A;  1J03 A;  1LJ0 A;  3X35 A;  3MUS A;  4B8N A;  1M59 A;  1I5U A;  1FCB A;  2I96 A;  2OZ0 A;  3OZZ B;  1DO9 A;  1MNY A;  1AWP A;  1U9U A;  3NER A;  4HIL A;  2AXX A;  1HKO A;  1EHB A;  1NX7 A;  1BLV A;  1AXX A;  1EUE A;  3X32 A;  1BFX A;  1LDC A;  1CXY A;  1KBI A;  1LCO A;  1SOX A;  1IEU A;  1IB7 A;  3KS0 A;  2KEO A;  1AQA A;  1LQX A;  1LTD A;  2I89 A; 
#chains in the Genus database with same CATH topology
 1F04 A;  1SH4 A;  1AW3 A;  1F03 A;  1ICC A;  1IET A;  1I8C A;  1M20 A;  3X34 A;  2M33 A;  1CYO A;  1J0Q A;  1MJ4 A;  1B5A A;  1M2M A;  1B5B A;  1JEX A;  3X33 A;  3LF5 A;  1U9M A;  1ES1 A;  1B5M A;  2IBJ A;  1X3X A;  1M2I A;  1T0G A;  1LR6 A;  4X8Y A;  1I87 A;  4HIN A;  1J03 A;  1LJ0 A;  3X35 A;  3MUS A;  4B8N A;  1M59 A;  1I5U A;  1FCB A;  2I96 A;  2OZ0 A;  3OZZ B;  1DO9 A;  1MNY A;  1AWP A;  1U9U A;  3NER A;  4HIL A;  2AXX A;  1HKO A;  1EHB A;  1NX7 A;  1BLV A;  1AXX A;  1EUE A;  3X32 A;  1BFX A;  1LDC A;  1CXY A;  1KBI A;  1LCO A;  1SOX A;  1IEU A;  1IB7 A;  3KS0 A;  2KEO A;  1AQA A;  1LQX A;  1LTD A;  2I89 A; 
#chains in the Genus database with same CATH homology
 1F04 A;  1SH4 A;  1AW3 A;  1F03 A;  1ICC A;  1IET A;  1I8C A;  1M20 A;  3X34 A;  2M33 A;  1CYO A;  1J0Q A;  1MJ4 A;  1B5A A;  1M2M A;  1B5B A;  1JEX A;  3X33 A;  3LF5 A;  1U9M A;  1ES1 A;  1B5M A;  2IBJ A;  1X3X A;  1M2I A;  1T0G A;  1LR6 A;  4X8Y A;  1I87 A;  4HIN A;  1J03 A;  1LJ0 A;  3X35 A;  3MUS A;  4B8N A;  1M59 A;  1I5U A;  1FCB A;  2I96 A;  2OZ0 A;  3OZZ B;  1DO9 A;  1MNY A;  1AWP A;  1U9U A;  3NER A;  4HIL A;  2AXX A;  1HKO A;  1EHB A;  1NX7 A;  1BLV A;  1AXX A;  1EUE A;  3X32 A;  1BFX A;  1LDC A;  1CXY A;  1KBI A;  1LCO A;  1SOX A;  1IEU A;  1IB7 A;  3KS0 A;  2KEO A;  1AQA A;  1LQX A;  1LTD A;  2I89 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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