1MO8A

Atpase
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
213
structure length
213
Chain Sequence
QNPMTVAHMWFDNQIHEADTTENQSGVSFDKTSATWFALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIEVCCGSVMEMREKYTKIVEIPFNSTNKYQLSIHKNPNASEPKHLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title ATP-induced conformational changes of the nucleotide-binding domain of Na,K-ATPase
pubmed doi rcsb
source organism Rattus norvegicus
molecule tags Hydrolase
molecule keywords Sodium/Potassium-Transporting ATPase alpha-1
total genus 29
structure length 213
sequence length 213
ec nomenclature ec 7.2.2.13: Na(+)/K(+)-exchanging ATPase.
pdb deposition date 2002-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF13246 Cation_ATPase Cation transport ATPase (P-type)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1110.10 Alpha Beta 3-Layer(aba) Sandwich Calcium-transporting ATPase, cytoplasmic domain N Calcium-transporting ATPase, cytoplasmic domain N 1mo8A00
1U7QA 3WGVA 3B9BA 2ZBDA 3AR4A 3RFUA 5AW0A 2EATA 2AGVA 4HYTA 4UMVA 2YFYA 4UU0A 1T5SA 3GWIA 5AVSA 4J2TA 4YCLA 1Q3IA 3N5KA 2C8KA 3AR7A 5A3SA 5A3QA 3A1EA 5AVTA 2A00A 3W5BA 4YCNA 5AW7A 1MO8A 3N8GA 2ZBFA 2IYEA 3AR6A 2B8EA 3W5CA 2EARA 3AR5A 2ZBGA 3J7TA 4RESA 2ZBEA 5AW4A 5AVWA 2C88A 3A1DA 3AR9A 3FGOA 3AR3A 2ZXEA 3NALA 4BEWA 5AVUA 2YJ4A 3A3YA 1SVJA 2DQSA 4NABA 2OA0A 3SKYA 2EAUA 5AW6A 5AW9A 4KYTA 5A3RA 5AVYA 1VFPA 3SKXA 5AW2A 2KMXA 3NAMA 3B9RA 1MO7A 3FPBA 5AW3A 4BBJA 5AW5A 4H1WA 3AR2A 3A1CA 2YJ3A 5AW8A 5AVRA 2ARFA 2YJ5A 3AR8A 2KMVA 4BEVA 3TLMA 3KDPA 3B8EA 1WPGA 4XOUA 4RETA 2BY4A 2C9MA 3W5AA 2O9JA 5AVZA 1SU4A 4XE5A 4BYGA 3FPSA 2YJ6A 1XP5A 1IWOA 2C8LA 3BA6A 3WGUA 5AW1A 3NANA 4UU1A 5AVVA 5AVQA 5AVXA 4Y3UA 3W5DA 1T5TA 4YCMA 2A29A
chains in the Genus database with same CATH superfamily
1U7QA 3WGVA 3B9BA 2ZBDA 3AR4A 3RFUA 5AW0A 2EATA 2AGVA 4HYTA 4UMVA 2YFYA 4UU0A 1T5SA 3GWIA 5AVSA 4J2TA 4YCLA 1Q3IA 3N5KA 2C8KA 3AR7A 5A3SA 5A3QA 3A1EA 5AVTA 2A00A 3W5BA 4YCNA 5AW7A 1MO8A 3N8GA 2ZBFA 2IYEA 3AR6A 2B8EA 3W5CA 2EARA 3AR5A 2ZBGA 3J7TA 4RESA 2ZBEA 5AW4A 5AVWA 2C88A 3A1DA 3AR9A 3FGOA 3AR3A 2ZXEA 3NALA 4BEWA 5AVUA 2YJ4A 3A3YA 1SVJA 2DQSA 4NABA 2OA0A 3SKYA 2EAUA 5AW6A 5AW9A 4KYTA 5A3RA 5AVYA 1VFPA 3SKXA 5AW2A 2KMXA 3NAMA 3B9RA 1MO7A 3FPBA 5AW3A 4BBJA 5AW5A 4H1WA 3AR2A 3A1CA 2YJ3A 5AW8A 5AVRA 2ARFA 2YJ5A 3AR8A 2KMVA 4BEVA 3TLMA 3KDPA 3B8EA 1WPGA 4XOUA 4RETA 2BY4A 2C9MA 3W5AA 2O9JA 5AVZA 1SU4A 4XE5A 4BYGA 3FPSA 2YJ6A 1XP5A 1IWOA 2C8LA 3BA6A 3WGUA 5AW1A 3NANA 4UU1A 5AVVA 5AVQA 5AVXA 4Y3UA 3W5DA 1T5TA 4YCMA 2A29A
chains in the Genus database with same CATH topology
1U7QA 3WGVA 3B9BA 2ZBDA 3AR4A 3RFUA 5AW0A 2EATA 2AGVA 4HYTA 4UMVA 2YFYA 4UU0A 1T5SA 3GWIA 5AVSA 4J2TA 4YCLA 1Q3IA 3N5KA 2C8KA 3AR7A 5A3SA 5A3QA 3A1EA 5AVTA 2A00A 3W5BA 4YCNA 5AW7A 1MO8A 3N8GA 2ZBFA 2IYEA 3AR6A 2B8EA 3W5CA 2EARA 3AR5A 2ZBGA 3J7TA 4RESA 2ZBEA 5AW4A 5AVWA 2C88A 3A1DA 3AR9A 3FGOA 3AR3A 2ZXEA 3NALA 4BEWA 5AVUA 2YJ4A 3A3YA 1SVJA 2DQSA 4NABA 2OA0A 3SKYA 2EAUA 5AW6A 5AW9A 4KYTA 5A3RA 5AVYA 1VFPA 3SKXA 5AW2A 2KMXA 3NAMA 3B9RA 1MO7A 3FPBA 5AW3A 4BBJA 5AW5A 4H1WA 3AR2A 3A1CA 2YJ3A 5AW8A 5AVRA 2ARFA 2YJ5A 3AR8A 2KMVA 4BEVA 3TLMA 3KDPA 3B8EA 1WPGA 4XOUA 4RETA 2BY4A 2C9MA 3W5AA 2O9JA 5AVZA 1SU4A 4XE5A 4BYGA 3FPSA 2YJ6A 1XP5A 1IWOA 2C8LA 3BA6A 3WGUA 5AW1A 3NANA 4UU1A 5AVVA 5AVQA 5AVXA 4Y3UA 3W5DA 1T5TA 4YCMA 2A29A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U7Q A;  3WGV A;  3B9B A;  2ZBD A;  3AR4 A;  3RFU A;  5AW0 A;  2EAT A;  2AGV A;  4HYT A;  4UMV A;  2YFY A;  4UU0 A;  1T5S A;  3GWI A;  5AVS A;  4J2T A;  4YCL A;  1Q3I A;  3N5K A;  2C8K A;  3AR7 A;  5A3S A;  5A3Q A;  3A1E A;  5AVT A;  2A00 A;  3W5B A;  4YCN A;  5AW7 A;  1MO8 A;  3N8G A;  2ZBF A;  2IYE A;  3AR6 A;  2B8E A;  3W5C A;  2EAR A;  3AR5 A;  2ZBG A;  3J7T A;  4RES A;  2ZBE A;  5AW4 A;  5AVW A;  2C88 A;  3A1D A;  3AR9 A;  3FGO A;  3AR3 A;  2ZXE A;  3NAL A;  4BEW A;  5AVU A;  2YJ4 A;  3A3Y A;  1SVJ A;  2DQS A;  4NAB A;  2OA0 A;  3SKY A;  2EAU A;  5AW6 A;  5AW9 A;  4KYT A;  5A3R A;  5AVY A;  1VFP A;  3SKX A;  5AW2 A;  2KMX A;  3NAM A;  3B9R A;  1MO7 A;  3FPB A;  5AW3 A;  4BBJ A;  5AW5 A;  4H1W A;  3AR2 A;  3A1C A;  2YJ3 A;  5AW8 A;  5AVR A;  2ARF A;  2YJ5 A;  3AR8 A;  2KMV A;  4BEV A;  3TLM A;  3KDP A;  3B8E A;  1WPG A;  4XOU A;  4RET A;  2BY4 A;  2C9M A;  3W5A A;  2O9J A;  5AVZ A;  1SU4 A;  4XE5 A;  4BYG A;  3FPS A;  2YJ6 A;  1XP5 A;  1IWO A;  2C8L A;  3BA6 A;  3WGU A;  5AW1 A;  3NAN A;  4UU1 A;  5AVV A;  5AVQ A;  5AVX A;  4Y3U A;  3W5D A;  1T5T A;  4YCM A;  2A29 A; 
#chains in the Genus database with same CATH topology
 1U7Q A;  3WGV A;  3B9B A;  2ZBD A;  3AR4 A;  3RFU A;  5AW0 A;  2EAT A;  2AGV A;  4HYT A;  4UMV A;  2YFY A;  4UU0 A;  1T5S A;  3GWI A;  5AVS A;  4J2T A;  4YCL A;  1Q3I A;  3N5K A;  2C8K A;  3AR7 A;  5A3S A;  5A3Q A;  3A1E A;  5AVT A;  2A00 A;  3W5B A;  4YCN A;  5AW7 A;  1MO8 A;  3N8G A;  2ZBF A;  2IYE A;  3AR6 A;  2B8E A;  3W5C A;  2EAR A;  3AR5 A;  2ZBG A;  3J7T A;  4RES A;  2ZBE A;  5AW4 A;  5AVW A;  2C88 A;  3A1D A;  3AR9 A;  3FGO A;  3AR3 A;  2ZXE A;  3NAL A;  4BEW A;  5AVU A;  2YJ4 A;  3A3Y A;  1SVJ A;  2DQS A;  4NAB A;  2OA0 A;  3SKY A;  2EAU A;  5AW6 A;  5AW9 A;  4KYT A;  5A3R A;  5AVY A;  1VFP A;  3SKX A;  5AW2 A;  2KMX A;  3NAM A;  3B9R A;  1MO7 A;  3FPB A;  5AW3 A;  4BBJ A;  5AW5 A;  4H1W A;  3AR2 A;  3A1C A;  2YJ3 A;  5AW8 A;  5AVR A;  2ARF A;  2YJ5 A;  3AR8 A;  2KMV A;  4BEV A;  3TLM A;  3KDP A;  3B8E A;  1WPG A;  4XOU A;  4RET A;  2BY4 A;  2C9M A;  3W5A A;  2O9J A;  5AVZ A;  1SU4 A;  4XE5 A;  4BYG A;  3FPS A;  2YJ6 A;  1XP5 A;  1IWO A;  2C8L A;  3BA6 A;  3WGU A;  5AW1 A;  3NAN A;  4UU1 A;  5AVV A;  5AVQ A;  5AVX A;  4Y3U A;  3W5D A;  1T5T A;  4YCM A;  2A29 A; 
#chains in the Genus database with same CATH homology
 1U7Q A;  3WGV A;  3B9B A;  2ZBD A;  3AR4 A;  3RFU A;  5AW0 A;  2EAT A;  2AGV A;  4HYT A;  4UMV A;  2YFY A;  4UU0 A;  1T5S A;  3GWI A;  5AVS A;  4J2T A;  4YCL A;  1Q3I A;  3N5K A;  2C8K A;  3AR7 A;  5A3S A;  5A3Q A;  3A1E A;  5AVT A;  2A00 A;  3W5B A;  4YCN A;  5AW7 A;  1MO8 A;  3N8G A;  2ZBF A;  2IYE A;  3AR6 A;  2B8E A;  3W5C A;  2EAR A;  3AR5 A;  2ZBG A;  3J7T A;  4RES A;  2ZBE A;  5AW4 A;  5AVW A;  2C88 A;  3A1D A;  3AR9 A;  3FGO A;  3AR3 A;  2ZXE A;  3NAL A;  4BEW A;  5AVU A;  2YJ4 A;  3A3Y A;  1SVJ A;  2DQS A;  4NAB A;  2OA0 A;  3SKY A;  2EAU A;  5AW6 A;  5AW9 A;  4KYT A;  5A3R A;  5AVY A;  1VFP A;  3SKX A;  5AW2 A;  2KMX A;  3NAM A;  3B9R A;  1MO7 A;  3FPB A;  5AW3 A;  4BBJ A;  5AW5 A;  4H1W A;  3AR2 A;  3A1C A;  2YJ3 A;  5AW8 A;  5AVR A;  2ARF A;  2YJ5 A;  3AR8 A;  2KMV A;  4BEV A;  3TLM A;  3KDP A;  3B8E A;  1WPG A;  4XOU A;  4RET A;  2BY4 A;  2C9M A;  3W5A A;  2O9J A;  5AVZ A;  1SU4 A;  4XE5 A;  4BYG A;  3FPS A;  2YJ6 A;  1XP5 A;  1IWO A;  2C8L A;  3BA6 A;  3WGU A;  5AW1 A;  3NAN A;  4UU1 A;  5AVV A;  5AVQ A;  5AVX A;  4Y3U A;  3W5D A;  1T5T A;  4YCM A;  2A29 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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