1MP9A

Tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
193
structure length
193
Chain Sequence
DEIPYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVKPVEEEELE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TATA-binding protein
publication title Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins.
pubmed doi rcsb
source organism Sulfolobus acidocaldarius
molecule tags Dna binding protein
total genus 43
structure length 193
sequence length 193
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1mp9A01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1mp9A02
1AISA 4ROEB 2VJ0A 1R4XA 1QNAA 4RODB 1QN4A 4PY5A 1PZDA 3OCIA 2IV8A 1KYDA 3EIKA 2G30A 2Z8UA 1QNBA 1QNCA 2D0AA 1VTOA 1NVPA 1QN7A 4WZSD 3OC3C 1QN5A 1NH2A 1TGHA 1E42A 1KYFA 1MP9A 1C9BB 1QN3A 1KY6A 1KY7A 1B9KA 1KYUA 1W80A 4B0AA 5IYCP 3HS9A 1RM1A 2D0CA 1QN9A 3VN5A 3ASMA 1PCZA 1JFIC 1QNEA 1YTBA 1TBAB 3H1ZA 1YTFA 5IYBP 1NGMA 5IYDP 1VOKA 3HS8A 1VOLB 1QN8A 2MJ7A 1QTSA 1VTLE 1TBPA 1QTPA 2IV9A 1QN6A 1D3UA 2D0BA 1CDWA 4ROCB
chains in the Genus database with same CATH superfamily
3KRMA 2H4LX 2VJ0A 4EJZA 1R4XA 1C47A 1QNAA 1YQMA 3OCIA 1UL7A 2G30A 2Z8UA 1QNCA 1T6AA 1LWYA 4WZSD 2NOIA 2NOZA 1QN5A 1P5GX 3D4VA 1NH2A 1N39A 2NOFA 2QLVA 1MP9A 1C4GA 3EAYA 3I0WA 1UT4A 1LXTA 2F7LA 2JPIA 3HS9A 4WXAA 5HSHA 5IYCP 3OH6A 3VN5A 5BMNA 3ASMA 1QN9A 2LAEA 2HZSA 1TUOA 1DIZA 5IYDP 1VOKA 2OOXA 2MJ7A 1QN8A 2FGTA 2FUVA 1MPGA 3T4NA 1M3HA 1KFIA 3ENOC 4WX8A 2HL9A 3OGDA 1AISA 4ROEB 2I5WA 1HU0A 2HL8A 2V9JA 1JDYA 4PY5A 2NLVA 3CVSA 3CWTA 3EIKA 1YQRA 4DULA 1LWWA 1FN7A 2XHIA 3F0ZA 2YH5A 2D0AA 2JHJA 1NVPA 4HJHA 3OH9A 2Z0FA 3CWAA 3F10A 1QN3A 1YTFA 2NOLA 4B0AA 3CWUA 4EJYA 4QG5A 3TDHA 3PDKA 1JFIC 1TBAB 3H1ZA 4D7RA 5IYBP 1NGMA 1PCJX 5EPCA 1P5DX 1VTLE 1TBPA 3CVTA 3OLPA 2HZMA 1KO9A 5KL0A 2D0BA 2O3OA 1WQAA 2DKCA 5AN4A 1CDWA 1D3UA 2EHBD 3I3WA 5JMVD 1YQKA 1VKLA 4MRQA 1QN4A 2QR1A 1PZDA 3ENCA 2IV8A 2JHNA 3RSMA 1M3QA 2QRDA 1KFQA 1V5SA 2V92A 1UT7A 3OC3C 2Y8QA 3ULXA 5BMPA 3SNSA 4EAKA 1TGHA 1E42A 3NA5A 3I0XA 2QRCA 3TE5A 1XSZA 2H5AX 4EAGA 1KY6A 1KY7A 1B9KA 1KYUA 3IH7A 2V8QA 2D0CA 4EAJA 3D7QA 1QNEA 1PCMX 2OOYA 3UW2A 2NOBA 4CFFA 4TPSA 3KTUA 1VOLB 5F9CA 1M5Q1 2IV9A 2YA3A 5JN5A 1N3CA 1W80A 1EBMA 2FKFA 2FKMX 3RPJA 4C7PA 3OSEA 1K2YX 3DPTA 3DPUA 3PMGA 4RODB 1KYDA 1QNBA 1N3AA 3BKQX 2NOEA 3CWSA 4EAIA 2NWVA 1VTOA 3C04A 1QN7A 3CW7A 4IL8A 1K35A 1J3MA 1KYFA 4EALA 4I8OA 2MZ8A 1YQLA 1WJWA 1Q9UA 1C9BB 2HKPA 2NVMA 1QN6A 2DKDA 4Q11A 1LWVA 1RM1A 3N89A 2NOHA 2DKAA 1PCZA 2Y8LA 1YTBA 2PWWA 2R5XA 3OSMA 4BJUA 3HS8A 2ZFDB 1EUVA 1QTSA 2JOIA 2QREA 4D7QA 1PVSA 3OSTA 1QTPA 4ROCB
chains in the Genus database with same CATH topology
3KRMA 2VJ0A 4EJZA 1R4XA 1QNAA 1YQMA 3OCIA 2G30A 2Z8UA 1QNCA 1LWYA 4WZSD 2NOIA 2NOZA 1QN5A 1NH2A 1N39A 2NOFA 1MP9A 3I0WA 1UT4A 5IYCP 1QN9A 3HS9A 2NOBA 3VN5A 3ASMA 2LAEA 2HZSA 5IYDP 1VOKA 1QN8A 2MJ7A 2FGTA 1M3HA 1AISA 2I5WA 4ROEB 1HU0A 4PY5A 3EIKA 1YQRA 4DULA 1LWWA 1FN7A 2XHIA 3F0ZA 2YH5A 2D0AA 1NVPA 3F10A 1QN3A 1YTFA 2NOLA 4B0AA 4EJYA 1JFIC 1TBAB 3H1ZA 5IYBP 1NGMA 1VTLE 1TBPA 2HZMA 1KO9A 1D3UA 2D0BA 5AN4A 2O3OA 1CDWA 1YQKA 1QN4A 1PZDA 1M3QA 2IV8A 1UT7A 3OC3C 3ULXA 3SNSA 1TGHA 1E42A 3I0XA 1KY6A 1KY7A 1B9KA 1KYUA 3IH7A 2D0CA 1QNEA 3KTUA 4TPSA 1VOLB 2IV9A 1N3CA 1W80A 1EBMA 3RPJA 3DPTA 3DPUA 4RODB 1KYDA 1QNBA 1N3AA 2NOEA 1VTOA 1QN7A 1KYFA 4I8OA 2MZ8A 1YQLA 1C9BB 1QN6A 4Q11A 1LWVA 1RM1A 3N89A 2NOHA 1PCZA 1YTBA 3OSMA 3HS8A 1QTSA 2JOIA 3OSTA 1QTPA 4ROCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AIS A;  4ROE B;  2VJ0 A;  1R4X A;  1QNA A;  4ROD B;  1QN4 A;  4PY5 A;  1PZD A;  3OCI A;  2IV8 A;  1KYD A;  3EIK A;  2G30 A;  2Z8U A;  1QNB A;  1QNC A;  2D0A A;  1VTO A;  1NVP A;  1QN7 A;  4WZS D;  3OC3 C;  1QN5 A;  1NH2 A;  1TGH A;  1E42 A;  1KYF A;  1MP9 A;  1C9B B;  1QN3 A;  1KY6 A;  1KY7 A;  1B9K A;  1KYU A;  1W80 A;  4B0A A;  5IYC P;  3HS9 A;  1RM1 A;  2D0C A;  1QN9 A;  3VN5 A;  3ASM A;  1PCZ A;  1JFI C;  1QNE A;  1YTB A;  1TBA B;  3H1Z A;  1YTF A;  5IYB P;  1NGM A;  5IYD P;  1VOK A;  3HS8 A;  1VOL B;  1QN8 A;  2MJ7 A;  1QTS A;  1VTL E;  1TBP A;  1QTP A;  2IV9 A;  1QN6 A;  1D3U A;  2D0B A;  1CDW A;  4ROC B; 
#chains in the Genus database with same CATH topology
 3KRM A;  2H4L X;  2VJ0 A;  4EJZ A;  1R4X A;  1C47 A;  1QNA A;  1YQM A;  3OCI A;  1UL7 A;  2G30 A;  2Z8U A;  1QNC A;  1T6A A;  1LWY A;  4WZS D;  2NOI A;  2NOZ A;  1QN5 A;  1P5G X;  3D4V A;  1NH2 A;  1N39 A;  2NOF A;  2QLV A;  1MP9 A;  1C4G A;  3EAY A;  3I0W A;  1UT4 A;  1LXT A;  2F7L A;  2JPI A;  3HS9 A;  4WXA A;  5HSH A;  5IYC P;  3OH6 A;  3VN5 A;  5BMN A;  3ASM A;  1QN9 A;  2LAE A;  2HZS A;  1TUO A;  1DIZ A;  5IYD P;  1VOK A;  2OOX A;  2MJ7 A;  1QN8 A;  2FGT A;  2FUV A;  1MPG A;  3T4N A;  1M3H A;  1KFI A;  3ENO C;  4WX8 A;  2HL9 A;  3OGD A;  1AIS A;  4ROE B;  2I5W A;  1HU0 A;  2HL8 A;  2V9J A;  1JDY A;  4PY5 A;  2NLV A;  3CVS A;  3CWT A;  3EIK A;  1YQR A;  4DUL A;  1LWW A;  1FN7 A;  2XHI A;  3F0Z A;  2YH5 A;  2D0A A;  2JHJ A;  1NVP A;  4HJH A;  3OH9 A;  2Z0F A;  3CWA A;  3F10 A;  1QN3 A;  1YTF A;  2NOL A;  4B0A A;  3CWU A;  4EJY A;  4QG5 A;  3TDH A;  3PDK A;  1JFI C;  1TBA B;  3H1Z A;  4D7R A;  5IYB P;  1NGM A;  1PCJ X;  5EPC A;  1P5D X;  1VTL E;  1TBP A;  3CVT A;  3OLP A;  2HZM A;  1KO9 A;  5KL0 A;  2D0B A;  2O3O A;  1WQA A;  2DKC A;  5AN4 A;  1CDW A;  1D3U A;  2EHB D;  3I3W A;  5JMV D;  1YQK A;  1VKL A;  4MRQ A;  1QN4 A;  2QR1 A;  1PZD A;  3ENC A;  2IV8 A;  2JHN A;  3RSM A;  1M3Q A;  2QRD A;  1KFQ A;  1V5S A;  2V92 A;  1UT7 A;  3OC3 C;  2Y8Q A;  3ULX A;  5BMP A;  3SNS A;  4EAK A;  1TGH A;  1E42 A;  3NA5 A;  3I0X A;  2QRC A;  3TE5 A;  1XSZ A;  2H5A X;  4EAG A;  1KY6 A;  1KY7 A;  1B9K A;  1KYU A;  3IH7 A;  2V8Q A;  2D0C A;  4EAJ A;  3D7Q A;  1QNE A;  1PCM X;  2OOY A;  3UW2 A;  2NOB A;  4CFF A;  4TPS A;  3KTU A;  1VOL B;  5F9C A;  1M5Q 1;  2IV9 A;  2YA3 A;  5JN5 A;  1N3C A;  1W80 A;  1EBM A;  2FKF A;  2FKM X;  3RPJ A;  4C7P A;  3OSE A;  1K2Y X;  3DPT A;  3DPU A;  3PMG A;  4ROD B;  1KYD A;  1QNB A;  1N3A A;  3BKQ X;  2NOE A;  3CWS A;  4EAI A;  2NWV A;  1VTO A;  3C04 A;  1QN7 A;  3CW7 A;  4IL8 A;  1K35 A;  1J3M A;  1KYF A;  4EAL A;  4I8O A;  2MZ8 A;  1YQL A;  1WJW A;  1Q9U A;  1C9B B;  2HKP A;  2NVM A;  1QN6 A;  2DKD A;  4Q11 A;  1LWV A;  1RM1 A;  3N89 A;  2NOH A;  2DKA A;  1PCZ A;  2Y8L A;  1YTB A;  2PWW A;  2R5X A;  3OSM A;  4BJU A;  3HS8 A;  2ZFD B;  1EUV A;  1QTS A;  2JOI A;  2QRE A;  4D7Q A;  1PVS A;  3OST A;  1QTP A;  4ROC B; 
#chains in the Genus database with same CATH homology
 3KRM A;  2VJ0 A;  4EJZ A;  1R4X A;  1QNA A;  1YQM A;  3OCI A;  2G30 A;  2Z8U A;  1QNC A;  1LWY A;  4WZS D;  2NOI A;  2NOZ A;  1QN5 A;  1NH2 A;  1N39 A;  2NOF A;  1MP9 A;  3I0W A;  1UT4 A;  5IYC P;  1QN9 A;  3HS9 A;  2NOB A;  3VN5 A;  3ASM A;  2LAE A;  2HZS A;  5IYD P;  1VOK A;  1QN8 A;  2MJ7 A;  2FGT A;  1M3H A;  1AIS A;  2I5W A;  4ROE B;  1HU0 A;  4PY5 A;  3EIK A;  1YQR A;  4DUL A;  1LWW A;  1FN7 A;  2XHI A;  3F0Z A;  2YH5 A;  2D0A A;  1NVP A;  3F10 A;  1QN3 A;  1YTF A;  2NOL A;  4B0A A;  4EJY A;  1JFI C;  1TBA B;  3H1Z A;  5IYB P;  1NGM A;  1VTL E;  1TBP A;  2HZM A;  1KO9 A;  1D3U A;  2D0B A;  5AN4 A;  2O3O A;  1CDW A;  1YQK A;  1QN4 A;  1PZD A;  1M3Q A;  2IV8 A;  1UT7 A;  3OC3 C;  3ULX A;  3SNS A;  1TGH A;  1E42 A;  3I0X A;  1KY6 A;  1KY7 A;  1B9K A;  1KYU A;  3IH7 A;  2D0C A;  1QNE A;  3KTU A;  4TPS A;  1VOL B;  2IV9 A;  1N3C A;  1W80 A;  1EBM A;  3RPJ A;  3DPT A;  3DPU A;  4ROD B;  1KYD A;  1QNB A;  1N3A A;  2NOE A;  1VTO A;  1QN7 A;  1KYF A;  4I8O A;  2MZ8 A;  1YQL A;  1C9B B;  1QN6 A;  4Q11 A;  1LWV A;  1RM1 A;  3N89 A;  2NOH A;  1PCZ A;  1YTB A;  3OSM A;  3HS8 A;  1QTS A;  2JOI A;  3OST A;  1QTP A;  4ROC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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