1MP9A

Tbp from a mesothermophilic archaeon, sulfolobus acidocaldarius
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
193
structure length
193
Chain Sequence
b'DEIPYKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDKLVELDCVKPVEEEELE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Origins of Protein Stability Revealed by Comparing Crystal Structures of TATA Binding Proteins.
pubmed doi rcsb
molecule keywords TATA-binding protein
source organism Sulfolobus acidocaldarius
molecule tags Dna binding protein
total genus 43
structure length 193
sequence length 193
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-09-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1mp9A01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1mp9A02
1NGMA 1PZDA 1KY7A 1KYUA 2D0AA 1QN5A 1NH2A 1QN4A 1B9KA 1QNBA 3H1ZA 2Z8UA 1QN6A 2VJ0A 1YTFA 1VTLE 1QNEA 1KY6A 1QTSA 1D3UA 5IYDP 5IYCP 1C9BB 1TBAB 2MJ7A 4ROEB 1NVPA 1JFIC 3HS9A 1VTOA 1E42A 2IV9A 2D0BA 1TGHA 1QNAA 2IV8A 1KYFA 4ROCB 1QNCA 4PY5A 3VN5A 1AISA 3OCIA 1KYDA 1TBPA 3ASMA 4RODB 4B0AA 1VOKA 2G30A 1R4XA 1YTBA 5IYBP 3HS8A 4WZSD 1QN3A 1MP9A 1VOLB 1QN8A 1QTPA 1QN9A 2D0CA 1PCZA 1RM1A 3EIKA 3OC3C 1W80A 1CDWA 1QN7A
chains in the Genus database with same CATH superfamily
1KYUA 2HZMA 1QN5A 3IH7A 2QLVA 3CVTA 1B9KA 2H4LX 2YH5A 3RSMA 2VJ0A 4TPSA 5JN5A 2NOBA 1PVSA 1D3UA 1KFIA 5JMVD 3CVSA 5F9CA 1KFQA 1TBAB 1XSZA 3OLPA 2H5AX 2JHJA 3BKQX 3ULXA 4PY5A 2LAEA 1KYFA 4I8OA 1MPGA 3TE5A 3KTUA 1TBPA 2MZ8A 4RODB 4BJUA 1VOKA 2G30A 2Z0FA 1R4XA 1YTBA 5BMPA 2NLVA 3HS8A 1T6AA 3I0WA 1VKLA 2NWVA 1QTPA 3T4NA 1QN8A 1PCZA 2JHNA 1V5SA 1RM1A 3OGDA 1M5Q1 3EIKA 3OH9A 1QN7A 2JOIA 1NGMA 3I0XA 1WJWA 2F7LA 1UL7A 1QN6A 2NOFA 3D7QA 3CWTA 1VTLE 1QNEA 4D7QA 1N3CA 2MJ7A 1NVPA 2EHBD 2DKAA 2FGTA 1E42A 2IV9A 1EBMA 2D0BA 2NOEA 2YA3A 2V92A 2Y8LA 1TGHA 1PCJX 2DKDA 2NOHA 1C4GA 1JDYA 1C47A 1KYDA 3F0ZA 3CWUA 4EAGA 3OSMA 2HZSA 2NVMA 4QG5A 3OSTA 3PMGA 2FKMX 1YQRA 3OH6A 3EAYA 1LWWA 1J3MA 1QN3A 1MP9A 2QRDA 1EUVA 2QREA 1YQMA 1N3AA 1QN9A 2D0CA 4WX8A 4Q11A 1CDWA 2I5WA 4EALA 3D4VA 2NOIA 1PZDA 4IL8A 4DULA 2D0AA 3CWAA 1NH2A 2DKCA 3I3WA 3OSEA 1YQKA 4C7PA 2Z8UA 1YTFA 1P5DX 2NOZA 1YQLA 5IYDP 1C9BB 1K2YX 4ROEB 1JFIC 4CFFA 3HS9A 3UW2A 1M3HA 1M3QA 3TDHA 1LWYA 1QNAA 4ROCB 3CWSA 1AISA 4EJZA 3OCIA 3F10A 4B0AA 2O3OA 3C04A 1PCMX 3SNSA 2ZFDB 5IYBP 2HKPA 1LXTA 2QR1A 2HL8A 2Y8QA 4D7RA 2R5XA 3OC3C 2QRCA 1KY7A 1HU0A 2PWWA 2JPIA 2FUVA 5EPCA 1KO9A 5HSHA 1FN7A 1DIZA 1N39A 3H1ZA 1QNBA 3ENOC 1QN4A 2OOXA 5KL0A 1KY6A 1QTSA 2V8QA 3CW7A 5IYCP 1TUOA 3ENCA 4EAJA 3KRMA 4MRQA 1VTOA 2NOLA 2HL9A 2IV8A 1P5GX 3NA5A 2V9JA 4HJHA 3DPTA 1QNCA 4EJYA 3VN5A 4WXAA 2FKFA 3ASMA 1UT7A 3PDKA 4EAIA 2OOYA 4WZSD 1WQAA 1Q9UA 3RPJA 1VOLB 4EAKA 3N89A 1K35A 5BMNA 1LWVA 2XHIA 3DPUA 1W80A 1UT4A 5AN4A
chains in the Genus database with same CATH topology
1KYUA 2HZMA 1QN5A 3IH7A 1B9KA 2YH5A 2VJ0A 4TPSA 2NOBA 1D3UA 1TBAB 3ULXA 4PY5A 2LAEA 1KYFA 4I8OA 3KTUA 1TBPA 2MZ8A 4RODB 1VOKA 2G30A 1R4XA 1YTBA 3HS8A 3I0WA 3DPUA 1QN8A 1QTPA 1PCZA 1RM1A 3EIKA 1QN7A 2JOIA 1NGMA 3I0XA 1QN6A 2NOFA 1VTLE 1QNEA 1N3CA 2MJ7A 1NVPA 2FGTA 1E42A 2IV9A 1EBMA 2D0BA 2NOEA 1TGHA 2NOHA 1KYDA 3F0ZA 3OSMA 2HZSA 3OSTA 1YQRA 1LWWA 1QN3A 1MP9A 1YQMA 1N3AA 1QN9A 2D0CA 4Q11A 1CDWA 2I5WA 2NOIA 1PZDA 4DULA 2D0AA 1NH2A 1YQKA 2Z8UA 1YTFA 2NOZA 1YQLA 5IYDP 1C9BB 4ROEB 1JFIC 3HS9A 1M3HA 1M3QA 1LWYA 1QNAA 4ROCB 1AISA 4EJZA 3OCIA 4B0AA 2O3OA 3SNSA 5IYBP 3OC3C 1KY7A 1HU0A 1FN7A 1KO9A 1QN4A 1N39A 3H1ZA 1QNBA 1KY6A 1QTSA 5IYCP 3KRMA 2NOLA 1VTOA 2IV8A 1QNCA 3DPTA 4EJYA 3VN5A 3ASMA 1UT7A 4WZSD 3RPJA 1VOLB 1LWVA 3N89A 2XHIA 3F10A 1W80A 1UT4A 5AN4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NGM A;  1PZD A;  1KY7 A;  1KYU A;  2D0A A;  1QN5 A;  1NH2 A;  1QN4 A;  1B9K A;  1QNB A;  3H1Z A;  2Z8U A;  1QN6 A;  2VJ0 A;  1YTF A;  1VTL E;  1QNE A;  1KY6 A;  1QTS A;  1D3U A;  5IYD P;  5IYC P;  1C9B B;  1TBA B;  2MJ7 A;  4ROE B;  1NVP A;  1JFI C;  3HS9 A;  1VTO A;  1E42 A;  2IV9 A;  2D0B A;  1TGH A;  1QNA A;  2IV8 A;  1KYF A;  4ROC B;  1QNC A;  4PY5 A;  3VN5 A;  1AIS A;  3OCI A;  1KYD A;  1TBP A;  3ASM A;  4ROD B;  4B0A A;  1VOK A;  2G30 A;  1R4X A;  1YTB A;  5IYB P;  3HS8 A;  4WZS D;  1QN3 A;  1MP9 A;  1VOL B;  1QN8 A;  1QTP A;  1QN9 A;  2D0C A;  1PCZ A;  1RM1 A;  3EIK A;  3OC3 C;  1W80 A;  1CDW A;  1QN7 A; 
#chains in the Genus database with same CATH topology
 1KYU A;  2HZM A;  1QN5 A;  3IH7 A;  2QLV A;  3CVT A;  1B9K A;  2H4L X;  2YH5 A;  3RSM A;  2VJ0 A;  4TPS A;  5JN5 A;  2NOB A;  1PVS A;  1D3U A;  1KFI A;  5JMV D;  3CVS A;  5F9C A;  1KFQ A;  1TBA B;  1XSZ A;  3OLP A;  2H5A X;  2JHJ A;  3BKQ X;  3ULX A;  4PY5 A;  2LAE A;  1KYF A;  4I8O A;  1MPG A;  3TE5 A;  3KTU A;  1TBP A;  2MZ8 A;  4ROD B;  4BJU A;  1VOK A;  2G30 A;  2Z0F A;  1R4X A;  1YTB A;  5BMP A;  2NLV A;  3HS8 A;  1T6A A;  3I0W A;  1VKL A;  2NWV A;  1QTP A;  3T4N A;  1QN8 A;  1PCZ A;  2JHN A;  1V5S A;  1RM1 A;  3OGD A;  1M5Q 1;  3EIK A;  3OH9 A;  1QN7 A;  2JOI A;  1NGM A;  3I0X A;  1WJW A;  2F7L A;  1UL7 A;  1QN6 A;  2NOF A;  3D7Q A;  3CWT A;  1VTL E;  1QNE A;  4D7Q A;  1N3C A;  2MJ7 A;  1NVP A;  2EHB D;  2DKA A;  2FGT A;  1E42 A;  2IV9 A;  1EBM A;  2D0B A;  2NOE A;  2YA3 A;  2V92 A;  2Y8L A;  1TGH A;  1PCJ X;  2DKD A;  2NOH A;  1C4G A;  1JDY A;  1C47 A;  1KYD A;  3F0Z A;  3CWU A;  4EAG A;  3OSM A;  2HZS A;  2NVM A;  4QG5 A;  3OST A;  3PMG A;  2FKM X;  1YQR A;  3OH6 A;  3EAY A;  1LWW A;  1J3M A;  1QN3 A;  1MP9 A;  2QRD A;  1EUV A;  2QRE A;  1YQM A;  1N3A A;  1QN9 A;  2D0C A;  4WX8 A;  4Q11 A;  1CDW A;  2I5W A;  4EAL A;  3D4V A;  2NOI A;  1PZD A;  4IL8 A;  4DUL A;  2D0A A;  3CWA A;  1NH2 A;  2DKC A;  3I3W A;  3OSE A;  1YQK A;  4C7P A;  2Z8U A;  1YTF A;  1P5D X;  2NOZ A;  1YQL A;  5IYD P;  1C9B B;  1K2Y X;  4ROE B;  1JFI C;  4CFF A;  3HS9 A;  3UW2 A;  1M3H A;  1M3Q A;  3TDH A;  1LWY A;  1QNA A;  4ROC B;  3CWS A;  1AIS A;  4EJZ A;  3OCI A;  3F10 A;  4B0A A;  2O3O A;  3C04 A;  1PCM X;  3SNS A;  2ZFD B;  5IYB P;  2HKP A;  1LXT A;  2QR1 A;  2HL8 A;  2Y8Q A;  4D7R A;  2R5X A;  3OC3 C;  2QRC A;  1KY7 A;  1HU0 A;  2PWW A;  2JPI A;  2FUV A;  5EPC A;  1KO9 A;  5HSH A;  1FN7 A;  1DIZ A;  1N39 A;  3H1Z A;  1QNB A;  3ENO C;  1QN4 A;  2OOX A;  5KL0 A;  1KY6 A;  1QTS A;  2V8Q A;  3CW7 A;  5IYC P;  1TUO A;  3ENC A;  4EAJ A;  3KRM A;  4MRQ A;  1VTO A;  2NOL A;  2HL9 A;  2IV8 A;  1P5G X;  3NA5 A;  2V9J A;  4HJH A;  3DPT A;  1QNC A;  4EJY A;  3VN5 A;  4WXA A;  2FKF A;  3ASM A;  1UT7 A;  3PDK A;  4EAI A;  2OOY A;  4WZS D;  1WQA A;  1Q9U A;  3RPJ A;  1VOL B;  4EAK A;  3N89 A;  1K35 A;  5BMN A;  1LWV A;  2XHI A;  3DPU A;  1W80 A;  1UT4 A;  5AN4 A; 
#chains in the Genus database with same CATH homology
 1KYU A;  2HZM A;  1QN5 A;  3IH7 A;  1B9K A;  2YH5 A;  2VJ0 A;  4TPS A;  2NOB A;  1D3U A;  1TBA B;  3ULX A;  4PY5 A;  2LAE A;  1KYF A;  4I8O A;  3KTU A;  1TBP A;  2MZ8 A;  4ROD B;  1VOK A;  2G30 A;  1R4X A;  1YTB A;  3HS8 A;  3I0W A;  3DPU A;  1QN8 A;  1QTP A;  1PCZ A;  1RM1 A;  3EIK A;  1QN7 A;  2JOI A;  1NGM A;  3I0X A;  1QN6 A;  2NOF A;  1VTL E;  1QNE A;  1N3C A;  2MJ7 A;  1NVP A;  2FGT A;  1E42 A;  2IV9 A;  1EBM A;  2D0B A;  2NOE A;  1TGH A;  2NOH A;  1KYD A;  3F0Z A;  3OSM A;  2HZS A;  3OST A;  1YQR A;  1LWW A;  1QN3 A;  1MP9 A;  1YQM A;  1N3A A;  1QN9 A;  2D0C A;  4Q11 A;  1CDW A;  2I5W A;  2NOI A;  1PZD A;  4DUL A;  2D0A A;  1NH2 A;  1YQK A;  2Z8U A;  1YTF A;  2NOZ A;  1YQL A;  5IYD P;  1C9B B;  4ROE B;  1JFI C;  3HS9 A;  1M3H A;  1M3Q A;  1LWY A;  1QNA A;  4ROC B;  1AIS A;  4EJZ A;  3OCI A;  4B0A A;  2O3O A;  3SNS A;  5IYB P;  3OC3 C;  1KY7 A;  1HU0 A;  1FN7 A;  1KO9 A;  1QN4 A;  1N39 A;  3H1Z A;  1QNB A;  1KY6 A;  1QTS A;  5IYC P;  3KRM A;  2NOL A;  1VTO A;  2IV8 A;  1QNC A;  3DPT A;  4EJY A;  3VN5 A;  3ASM A;  1UT7 A;  4WZS D;  3RPJ A;  1VOL B;  1LWV A;  3N89 A;  2XHI A;  3F10 A;  1W80 A;  1UT4 A;  5AN4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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