1MPMA

Maltoporin maltose complex
Total Genus 115
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
115
sequence length
421
structure length
421
Chain Sequence
VDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords MALTOPORIN
publication title Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway.
pubmed doi rcsb
total genus 115
structure length 421
sequence length 421
chains with identical sequence B, C
ec nomenclature
pdb deposition date 1996-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02264 LamB LamB porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.10 Mainly Beta Beta Barrel Maltoporin; Chain A Porin, LamB type 1mpmA00
1MPQA 1MPMA 2MPRA 1A0TP 1OH2Q 1OH2P 1MALA 1MPRA 1MPNA 1MPOA 1A0SP 1AF6A
chains in the Genus database with same CATH superfamily
3CSLA 1MPQA 2W78A 2W6UA 4CU4A 1XKHA 1FEPA 3RGNA 1QFFA 3V89A 1BY3A 2FCPA 3M8DA 2W6TA 3M8BA 3RGMA 1A0TP 3V8XA 1PO0A 1MPRA 3CSNA 3EFMA 2GSKA 1NQFA 1PO3A 1NQHA 1PNZA 1NQEA 2GRXA 3FHHA 4AIPA 2HDIA 2YSUA 2MPRA 4EPAA 1KMPA 2W77A 1OH2P 1UJWA 1MALA 1MPNA 2W76A 1FI1A 4B7OA 1MPOA 3DDRA 1A0SP 2W75A 2W16A 2O5PA 1AF6A 1XKWA 1KMOA 1QFGA 2IAHA 1MPMA 1QJQA 2HDFA 3QLBA 5FOKA 1OH2Q 1NQGA 2GUFA 1BY5A 1QKCA 4AIQA 1FCPA
chains in the Genus database with same CATH topology
1MPQA 1MPMA 2MPRA 1A0TP 1OH2Q 1OH2P 1MALA 1MPRA 1MPNA 1MPOA 1A0SP 1AF6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MPQ A;  1MPM A;  2MPR A;  1A0T P;  1OH2 Q;  1OH2 P;  1MAL A;  1MPR A;  1MPN A;  1MPO A;  1A0S P;  1AF6 A; 
#chains in the Genus database with same CATH topology
 3CSL A;  1MPQ A;  2W78 A;  2W6U A;  4CU4 A;  1XKH A;  1FEP A;  3RGN A;  1QFF A;  3V89 A;  1BY3 A;  2FCP A;  3M8D A;  2W6T A;  3M8B A;  3RGM A;  1A0T P;  3V8X A;  1PO0 A;  1MPR A;  3CSN A;  3EFM A;  2GSK A;  1NQF A;  1PO3 A;  1NQH A;  1PNZ A;  1NQE A;  2GRX A;  3FHH A;  4AIP A;  2HDI A;  2YSU A;  2MPR A;  4EPA A;  1KMP A;  2W77 A;  1OH2 P;  1UJW A;  1MAL A;  1MPN A;  2W76 A;  1FI1 A;  4B7O A;  1MPO A;  3DDR A;  1A0S P;  2W75 A;  2W16 A;  2O5P A;  1AF6 A;  1XKW A;  1KMO A;  1QFG A;  2IAH A;  1MPM A;  1QJQ A;  2HDF A;  3QLB A;  5FOK A;  1OH2 Q;  1NQG A;  2GUF A;  1BY5 A;  1QKC A;  4AIQ A;  1FCP A; 
#chains in the Genus database with same CATH homology
 1MPQ A;  1MPM A;  2MPR A;  1A0T P;  1OH2 Q;  1OH2 P;  1MAL A;  1MPR A;  1MPN A;  1MPO A;  1A0S P;  1AF6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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