1MPOA

Maltoporin maltohexaose complex
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
421
structure length
421
Chain Sequence
VDFHGYARSGIGWTGSGGEQQCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATDPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGFGKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGVAFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFATYAKWDEKWGYDYTGNADNNANFGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords MALTOPORIN
publication title Crystal structures of various maltooligosaccharides bound to maltoporin reveal a specific sugar translocation pathway.
pubmed doi rcsb
total genus 111
structure length 421
sequence length 421
chains with identical sequence B, C
ec nomenclature
pdb deposition date 1996-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02264 LamB LamB porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.10 Mainly Beta Beta Barrel Maltoporin; Chain A Porin, LamB type 1mpoA00
1A0TP 1MPQA 1MPOA 1AF6A 1MPRA 1OH2P 2MPRA 1MALA 1A0SP 1MPNA 1OH2Q 1MPMA
chains in the Genus database with same CATH superfamily
1MPQA 1BY3A 5FOKA 2FCPA 1QFGA 2YSUA 1PNZA 1QFFA 2W78A 2GRXA 2GUFA 1MPNA 1XKHA 2IAHA 2HDFA 1PO3A 1PO0A 1XKWA 4AIQA 4CU4A 1KMPA 1MPOA 2W6TA 2W16A 1AF6A 1MPRA 1OH2P 3V8XA 2MPRA 2W6UA 1NQFA 1A0SP 3M8DA 3CSLA 1MALA 4EPAA 1QKCA 2GSKA 3M8BA 3FHHA 4AIPA 3EFMA 4B7OA 2HDIA 1BY5A 1KMOA 2W76A 3DDRA 1NQGA 1A0TP 3RGMA 3RGNA 1FI1A 1FCPA 2W75A 1FEPA 1NQEA 1NQHA 1QJQA 3CSNA 2O5PA 3V89A 1UJWA 3QLBA 2W77A 1OH2Q 1MPMA
chains in the Genus database with same CATH topology
1A0TP 1MPQA 1MPOA 1AF6A 1MPRA 1OH2P 2MPRA 1MALA 1A0SP 1MPNA 1OH2Q 1MPMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A0T P;  1MPQ A;  1MPO A;  1AF6 A;  1MPR A;  1OH2 P;  2MPR A;  1MAL A;  1A0S P;  1MPN A;  1OH2 Q;  1MPM A; 
#chains in the Genus database with same CATH topology
 1MPQ A;  1BY3 A;  5FOK A;  2FCP A;  1QFG A;  2YSU A;  1PNZ A;  1QFF A;  2W78 A;  2GRX A;  2GUF A;  1MPN A;  1XKH A;  2IAH A;  2HDF A;  1PO3 A;  1PO0 A;  1XKW A;  4AIQ A;  4CU4 A;  1KMP A;  1MPO A;  2W6T A;  2W16 A;  1AF6 A;  1MPR A;  1OH2 P;  3V8X A;  2MPR A;  2W6U A;  1NQF A;  1A0S P;  3M8D A;  3CSL A;  1MAL A;  4EPA A;  1QKC A;  2GSK A;  3M8B A;  3FHH A;  4AIP A;  3EFM A;  4B7O A;  2HDI A;  1BY5 A;  1KMO A;  2W76 A;  3DDR A;  1NQG A;  1A0T P;  3RGM A;  3RGN A;  1FI1 A;  1FCP A;  2W75 A;  1FEP A;  1NQE A;  1NQH A;  1QJQ A;  3CSN A;  2O5P A;  3V89 A;  1UJW A;  3QLB A;  2W77 A;  1OH2 Q;  1MPM A; 
#chains in the Genus database with same CATH homology
 1A0T P;  1MPQ A;  1MPO A;  1AF6 A;  1MPR A;  1OH2 P;  2MPR A;  1MAL A;  1A0S P;  1MPN A;  1OH2 Q;  1MPM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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