1MQFA

Compound i from proteus mirabilis catalase
Total Genus 144
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
144
sequence length
476
structure length
475
Chain Sequence
b'KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Catalase
publication title Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 144
structure length 475
sequence length 476
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2002-09-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1mqfA00
2CAGA 4ENQA 4ENTA 3PQ2A 2XQ1A 4QORA 1GWFA 3VU3A 1U5UA 4BFLA 2CAHA 4B7AA 1IPHA 4QONA 1SI8A 2IQFA 1P7YA 2IUFA 1CF9A 3TTTA 5BV2P 4QOLA 1MQFA 4B5KA 4QOOA 1GGFA 4B2YA 4ENSA 1QWSA 1M7SA 1QF7A 4ENRA 1E93A 3PQ4A 1A4EA 3ZJ4A 3ZJ5A 3TTUA 1QWMA 1P81A 1H6NA 3TTVA 1HBZA 1GWEA 1P80A 2A9EA 3DY5A 4AUEA 3PQ6A 1GGEA 4CABA 2J2MA 3PQ7A 1GGKA 4AUNA 3TTWA 3P9QA 4B40A 1F4JA 4ENWA 3PQ5A 3EJ6A 1GGJA 4AJ9A 1NM0A 3HB6A 4AULA 4QOPA 1QWLA 1M85A 4E37A 1GWHA 2ISAA 1SY7A 4BIMA 1GG9A 4QOMA 3P9RA 1GGHA 4ENUA 4AUMA 3P9SA 4B31A 1P7ZA 3PQ8A 3PQ3A 3TTXA 4ENVA 2XF2A 1H7KA 3P9PA 4QOQA 4ENPA
chains in the Genus database with same CATH superfamily
3E4WA 2CAGA 4ENQA 4ENTA 3PQ2A 2XQ1A 4QORA 1DGFA 1GWFA 3VU3A 1U5UA 4BFLA 2CAHA 4B7AA 1IPHA 1QQWA 4QONA 1SI8A 7CATA 2IQFA 1P7YA 2IUFA 1CF9A 3TTTA 5BV2P 1DGHA 4QOLA 1MQFA 4B5KA 1TH2A 4QOOA 1GGFA 4B2YA 4ENSA 1QWSA 1M7SA 1QF7A 4ENRA 1E93A 3PQ4A 4B7GA 1A4EA 3ZJ4A 3ZJ5A 3RE8A 3TTUA 1QWMA 1P81A 1H6NA 3TTVA 1HBZA 3RGSA 1GWEA 1P80A 1TH3A 2A9EA 3DY5A 4AUEA 3PQ6A 1GGEA 4CABA 3J7BA 1TGUA 2J2MA 4B7FA 3PQ7A 8CATA 1GGKA 4AUNA 3TTWA 3P9QA 1DGHB 4B40A 1F4JA 4ENWA 3PQ5A 3EJ6A 1GGJA 4AJ9A 1NM0A 3HB6A 4AULA 4QOPA 1QWLA 1M85A 4E37A 1GWHA 2ISAA 1DGGA 1SY7A 4BIMA 1GG9A 4QOMA 3P9RA 1GGHA 4ENUA 3E4YA 3RGPA 4B7HA 4AUMA 4BLCA 3P9SA 4B31A 1P7ZA 1DGBA 3PQ8A 3PQ3A 3TTXA 4ENVA 2XF2A 5GKNA 1TH4A 1H7KA 3P9PA 4QOQA 3NWLA 4ENPA
chains in the Genus database with same CATH topology
2CAGA 4ENQA 4ENTA 3PQ2A 2XQ1A 4QORA 1GWFA 3VU3A 1U5UA 4BFLA 2CAHA 4B7AA 1IPHA 4QONA 1SI8A 2IQFA 1P7YA 2IUFA 1CF9A 3TTTA 5BV2P 4QOLA 1MQFA 4B5KA 4QOOA 1GGFA 4B2YA 4ENSA 1QWSA 1M7SA 1QF7A 4ENRA 1E93A 3PQ4A 1A4EA 3ZJ4A 3ZJ5A 3TTUA 1QWMA 1P81A 1H6NA 3TTVA 1HBZA 1GWEA 1P80A 2A9EA 3DY5A 4AUEA 3PQ6A 1GGEA 4CABA 2J2MA 3PQ7A 1GGKA 4AUNA 3TTWA 3P9QA 4B40A 1F4JA 4ENWA 3PQ5A 3EJ6A 1GGJA 4AJ9A 1NM0A 3HB6A 4AULA 4QOPA 1QWLA 1M85A 4E37A 1GWHA 2ISAA 1SY7A 4BIMA 1GG9A 4QOMA 3P9RA 1GGHA 4ENUA 4AUMA 3P9SA 4B31A 1P7ZA 3PQ8A 3PQ3A 3TTXA 4ENVA 2XF2A 1H7KA 3P9PA 4QOQA 4ENPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CAG A;  4ENQ A;  4ENT A;  3PQ2 A;  2XQ1 A;  4QOR A;  1GWF A;  3VU3 A;  1U5U A;  4BFL A;  2CAH A;  4B7A A;  1IPH A;  4QON A;  1SI8 A;  2IQF A;  1P7Y A;  2IUF A;  1CF9 A;  3TTT A;  5BV2 P;  4QOL A;  1MQF A;  4B5K A;  4QOO A;  1GGF A;  4B2Y A;  4ENS A;  1QWS A;  1M7S A;  1QF7 A;  4ENR A;  1E93 A;  3PQ4 A;  1A4E A;  3ZJ4 A;  3ZJ5 A;  3TTU A;  1QWM A;  1P81 A;  1H6N A;  3TTV A;  1HBZ A;  1GWE A;  1P80 A;  2A9E A;  3DY5 A;  4AUE A;  3PQ6 A;  1GGE A;  4CAB A;  2J2M A;  3PQ7 A;  1GGK A;  4AUN A;  3TTW A;  3P9Q A;  4B40 A;  1F4J A;  4ENW A;  3PQ5 A;  3EJ6 A;  1GGJ A;  4AJ9 A;  1NM0 A;  3HB6 A;  4AUL A;  4QOP A;  1QWL A;  1M85 A;  4E37 A;  1GWH A;  2ISA A;  1SY7 A;  4BIM A;  1GG9 A;  4QOM A;  3P9R A;  1GGH A;  4ENU A;  4AUM A;  3P9S A;  4B31 A;  1P7Z A;  3PQ8 A;  3PQ3 A;  3TTX A;  4ENV A;  2XF2 A;  1H7K A;  3P9P A;  4QOQ A;  4ENP A; 
#chains in the Genus database with same CATH topology
 3E4W A;  2CAG A;  4ENQ A;  4ENT A;  3PQ2 A;  2XQ1 A;  4QOR A;  1DGF A;  1GWF A;  3VU3 A;  1U5U A;  4BFL A;  2CAH A;  4B7A A;  1IPH A;  1QQW A;  4QON A;  1SI8 A;  7CAT A;  2IQF A;  1P7Y A;  2IUF A;  1CF9 A;  3TTT A;  5BV2 P;  1DGH A;  4QOL A;  1MQF A;  4B5K A;  1TH2 A;  4QOO A;  1GGF A;  4B2Y A;  4ENS A;  1QWS A;  1M7S A;  1QF7 A;  4ENR A;  1E93 A;  3PQ4 A;  4B7G A;  1A4E A;  3ZJ4 A;  3ZJ5 A;  3RE8 A;  3TTU A;  1QWM A;  1P81 A;  1H6N A;  3TTV A;  1HBZ A;  3RGS A;  1GWE A;  1P80 A;  1TH3 A;  2A9E A;  3DY5 A;  4AUE A;  3PQ6 A;  1GGE A;  4CAB A;  3J7B A;  1TGU A;  2J2M A;  4B7F A;  3PQ7 A;  8CAT A;  1GGK A;  4AUN A;  3TTW A;  3P9Q A;  1DGH B;  4B40 A;  1F4J A;  4ENW A;  3PQ5 A;  3EJ6 A;  1GGJ A;  4AJ9 A;  1NM0 A;  3HB6 A;  4AUL A;  4QOP A;  1QWL A;  1M85 A;  4E37 A;  1GWH A;  2ISA A;  1DGG A;  1SY7 A;  4BIM A;  1GG9 A;  4QOM A;  3P9R A;  1GGH A;  4ENU A;  3E4Y A;  3RGP A;  4B7H A;  4AUM A;  4BLC A;  3P9S A;  4B31 A;  1P7Z A;  1DGB A;  3PQ8 A;  3PQ3 A;  3TTX A;  4ENV A;  2XF2 A;  5GKN A;  1TH4 A;  1H7K A;  3P9P A;  4QOQ A;  3NWL A;  4ENP A; 
#chains in the Genus database with same CATH homology
 2CAG A;  4ENQ A;  4ENT A;  3PQ2 A;  2XQ1 A;  4QOR A;  1GWF A;  3VU3 A;  1U5U A;  4BFL A;  2CAH A;  4B7A A;  1IPH A;  4QON A;  1SI8 A;  2IQF A;  1P7Y A;  2IUF A;  1CF9 A;  3TTT A;  5BV2 P;  4QOL A;  1MQF A;  4B5K A;  4QOO A;  1GGF A;  4B2Y A;  4ENS A;  1QWS A;  1M7S A;  1QF7 A;  4ENR A;  1E93 A;  3PQ4 A;  1A4E A;  3ZJ4 A;  3ZJ5 A;  3TTU A;  1QWM A;  1P81 A;  1H6N A;  3TTV A;  1HBZ A;  1GWE A;  1P80 A;  2A9E A;  3DY5 A;  4AUE A;  3PQ6 A;  1GGE A;  4CAB A;  2J2M A;  3PQ7 A;  1GGK A;  4AUN A;  3TTW A;  3P9Q A;  4B40 A;  1F4J A;  4ENW A;  3PQ5 A;  3EJ6 A;  1GGJ A;  4AJ9 A;  1NM0 A;  3HB6 A;  4AUL A;  4QOP A;  1QWL A;  1M85 A;  4E37 A;  1GWH A;  2ISA A;  1SY7 A;  4BIM A;  1GG9 A;  4QOM A;  3P9R A;  1GGH A;  4ENU A;  4AUM A;  3P9S A;  4B31 A;  1P7Z A;  3PQ8 A;  3PQ3 A;  3TTX A;  4ENV A;  2XF2 A;  1H7K A;  3P9P A;  4QOQ A;  4ENP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...