1MUSA

Crystal structure of tn5 transposase complexed with resolved outside end dna
Total Genus 157
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
157
sequence length
474
structure length
458
Chain Sequence
SALHRAADWAKSVFSSAALGDPRRTARLVNVAAQLAKYSGKSITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKLAQEFPELLAIEDTTSLSYRHQVAEELGKLGSIQKASRGWWVHSVLLLEATTFRTVGLLHQEWWMRPDDPADADEKESGKWLAAAATSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNERFVVRSKHPRKDVESGLYLYDHLKNQPELGGYQISIPQKGVVDKRGKRKNRPARKASLSLRSGRITLKQGNITLNAVLAEEINPPKGETPLKWLLLTSEPVESLAQALRVIDIYTHRWRIEEFHKAWKTGAGAERQRMEKPDNLERMVSILSFVAVRLLQLRESFTPPSQSAETVLTPDECQLLGYLDKGKRKRKEKAGSLQWAYMAIARLGGFMDSKRTGIASWGALWEGWEALQSKLDGFLAAKDLMAQGIKIG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
molecule keywords DNA transferred strand
publication title Structure/function insights into Tn5 transposition.
pubmed doi rcsb
source organism Escherichia coli
total genus 157
structure length 458
sequence length 474
ec nomenclature
pdb deposition date 2002-09-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01609 DDE_Tnp_1 Transposase DDE domain
A PF02281 Dimer_Tnp_Tn5 Transposase Tn5 dimerisation domain
A PF14706 Tnp_DNA_bind Transposase DNA-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.246.40 Mainly Alpha Orthogonal Bundle Serum Albumin; Chain A, Domain 1 Tn5 transposase; domain 1 1musA01
1.10.740.10 Mainly Alpha Orthogonal Bundle Transferase Inhibitor Protein From Tn5; Chain A, domain2 Transferase Inhibitor Protein From Tn5; Chain 1musA03
3.90.350.10 Alpha Beta Alpha-Beta Complex Transposase Inhibitor Protein From Tn5; Chain A, domain 1 Transposase Inhibitor Protein From Tn5; Chain A, domain 1 1musA02
1MM8A 4DM0A 1MUSA 3ECPA 1B7EA 1MUHA
chains in the Genus database with same CATH superfamily
2BXCA 4ZBKA 1SB0A 1O9XA 4LUFA 4MBEC 3H37A 3WHSA 2VDBA 2JUHA 4IW1A 2EFHA 4LB2A 1MUSA 4L9KA 5ID9A 5BPKA 1B7EA 3G9KD 4EMXA 1AO6A 1GNIA 2XW0A 1VZSA 2BXOA 4ZC6A 1TF0A 4TQ0A 3V08A 5IIHA 2Z8IA 4GDKB 4N0UD 5GINA 2BXMA 2NQOA 2AGHB 2BXLA 2XW1A 4G01A 1J7EA 3ICXA 3LU6A 2DYMA 5GIPA 3NMUA 3UIVA 4ZUXV 2DBXA 4HGMB 5DBYA 4G03A 2BXBA 3KIKA 2BXKA 2BXAA 2YDFA 5HOZA 4E99A 1HK3A 4PO0A 4LB9A 1MUHA 3SIVB 4BY9C 3WHQA 1E7EA 5B5TA 4ZCGA 4WA6B 1E7AA 4D7XA 3ECPA 1H9ZA 4J2VA 5GHKA 3TDLA 3A75A 2OZBB 1BKEA 2XSIA 2NNWA 2LXTA 2XVUA 3FWCC 4FK5B 4Z9OA 1KW2A 4F5TA 2DBWA 4M70B 3GQXA 4L8UA 5IJFA 3H3AA 2DG5A 1MA9A 2BXGA 2K0NA 4K71A 3WHRA 2QMCA 5GIOA 4TQ1A 4G04A 5D7GA 5DQFA 1LOTA 4N3ZA 3SIUB 2BX8A 4DM0A 2BXPA 3NVIA 1KXPD 4GG2A 2CKXA 1E78A 1HK4A 1BM0A 2BXHA 3JRYA 4DHXB 3PLAA 2BXEA 1NT2B 1E7GA 3NVKA 3BPJA 3SQJA 2XMOA 2VUEA 4K2CA 3A73A 4NAWB 4OTUA 4OT2A 3LU8A 4ZBQA 5IIXA 1VFIA 1E7HA 5IJ5A 2KBZA 2V36A 2QM6A 2LXSA 4C31B 5ID7A 1IJGA 3M99C 2KWFA 3CX9A 1BJ5A 1KDXA 2AJEA 1J78A 2BXFA 5IJEA 2I30A 1E7FA 2LQHA 3FNMA 3GQUA 4ZBRA 4F5SA 3FWBC 2QHBA 4I9OA 1MIYA 3JQZA 4N0FD 1MIWA 3W1SA 3LU7A 1E7IA 2VUFA 1E7CA 1MIVA 4OTTA 5IIUA 4GDLB 2EFDA 4F5VA 3GA9L 1HK2A 1UORA 3NVMA 1E7BA 2GUTA 2ROHA 3B9LA 2DBUA 1GNJA 4W4UB 1FOUA 2XVWA 3KJLA 2E0YA 4IW2A 1H5WA 4F5UA 4JK4A 2Z8JA 3V03A 2BXNA 2BXIA 4OR0A 3VQIA 3V09A 1MM8A 4HGKA 3MHSB 2EFCA 2E0XA 4L9QA 4Z69A 4LA0A 1HK5A 1N5UA 4S1YA 1LNSA 2Z8KA 2I2ZA 4LUHA 2XVQA 2BXDA 2DYOA 5IFOA 1JNBA 2EFEA 1TXUA 2XVVA 1HA2A 2LOQA 2OT3A 1HK1A 3B9MA 2LQIA 4BKEA 4FIPB 4FJCB 4GDXA 5FUOA 2BXQA 3MHHB
chains in the Genus database with same CATH topology
1MM8A 4DM0A 1MUSA 3ECPA 1B7EA 1MUHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MM8 A;  4DM0 A;  1MUS A;  3ECP A;  1B7E A;  1MUH A; 
#chains in the Genus database with same CATH topology
 2BXC A;  4ZBK A;  1SB0 A;  1O9X A;  4LUF A;  4MBE C;  3H37 A;  3WHS A;  2VDB A;  2JUH A;  4IW1 A;  2EFH A;  4LB2 A;  1MUS A;  4L9K A;  5ID9 A;  5BPK A;  1B7E A;  3G9K D;  4EMX A;  1AO6 A;  1GNI A;  2XW0 A;  1VZS A;  2BXO A;  4ZC6 A;  1TF0 A;  4TQ0 A;  3V08 A;  5IIH A;  2Z8I A;  4GDK B;  4N0U D;  5GIN A;  2BXM A;  2NQO A;  2AGH B;  2BXL A;  2XW1 A;  4G01 A;  1J7E A;  3ICX A;  3LU6 A;  2DYM A;  5GIP A;  3NMU A;  3UIV A;  4ZUX V;  2DBX A;  4HGM B;  5DBY A;  4G03 A;  2BXB A;  3KIK A;  2BXK A;  2BXA A;  2YDF A;  5HOZ A;  4E99 A;  1HK3 A;  4PO0 A;  4LB9 A;  1MUH A;  3SIV B;  4BY9 C;  3WHQ A;  1E7E A;  5B5T A;  4ZCG A;  4WA6 B;  1E7A A;  4D7X A;  3ECP A;  1H9Z A;  4J2V A;  5GHK A;  3TDL A;  3A75 A;  2OZB B;  1BKE A;  2XSI A;  2NNW A;  2LXT A;  2XVU A;  3FWC C;  4FK5 B;  4Z9O A;  1KW2 A;  4F5T A;  2DBW A;  4M70 B;  3GQX A;  4L8U A;  5IJF A;  3H3A A;  2DG5 A;  1MA9 A;  2BXG A;  2K0N A;  4K71 A;  3WHR A;  2QMC A;  5GIO A;  4TQ1 A;  4G04 A;  5D7G A;  5DQF A;  1LOT A;  4N3Z A;  3SIU B;  2BX8 A;  4DM0 A;  2BXP A;  3NVI A;  1KXP D;  4GG2 A;  2CKX A;  1E78 A;  1HK4 A;  1BM0 A;  2BXH A;  3JRY A;  4DHX B;  3PLA A;  2BXE A;  1NT2 B;  1E7G A;  3NVK A;  3BPJ A;  3SQJ A;  2XMO A;  2VUE A;  4K2C A;  3A73 A;  4NAW B;  4OTU A;  4OT2 A;  3LU8 A;  4ZBQ A;  5IIX A;  1VFI A;  1E7H A;  5IJ5 A;  2KBZ A;  2V36 A;  2QM6 A;  2LXS A;  4C31 B;  5ID7 A;  1IJG A;  3M99 C;  2KWF A;  3CX9 A;  1BJ5 A;  1KDX A;  2AJE A;  1J78 A;  2BXF A;  5IJE A;  2I30 A;  1E7F A;  2LQH A;  3FNM A;  3GQU A;  4ZBR A;  4F5S A;  3FWB C;  2QHB A;  4I9O A;  1MIY A;  3JQZ A;  4N0F D;  1MIW A;  3W1S A;  3LU7 A;  1E7I A;  2VUF A;  1E7C A;  1MIV A;  4OTT A;  5IIU A;  4GDL B;  2EFD A;  4F5V A;  3GA9 L;  1HK2 A;  1UOR A;  3NVM A;  1E7B A;  2GUT A;  2ROH A;  3B9L A;  2DBU A;  1GNJ A;  4W4U B;  1FOU A;  2XVW A;  3KJL A;  2E0Y A;  4IW2 A;  1H5W A;  4F5U A;  4JK4 A;  2Z8J A;  3V03 A;  2BXN A;  2BXI A;  4OR0 A;  3VQI A;  3V09 A;  1MM8 A;  4HGK A;  3MHS B;  2EFC A;  2E0X A;  4L9Q A;  4Z69 A;  4LA0 A;  1HK5 A;  1N5U A;  4S1Y A;  1LNS A;  2Z8K A;  2I2Z A;  4LUH A;  2XVQ A;  2BXD A;  2DYO A;  5IFO A;  1JNB A;  2EFE A;  1TXU A;  2XVV A;  1HA2 A;  2LOQ A;  2OT3 A;  1HK1 A;  3B9M A;  2LQI A;  4BKE A;  4FIP B;  4FJC B;  4GDX A;  5FUO A;  2BXQ A;  3MHH B; 
#chains in the Genus database with same CATH homology
 1MM8 A;  4DM0 A;  1MUS A;  3ECP A;  1B7E A;  1MUH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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