1MVHA

Structure of the set domain histone lysine methyltransferase clr4
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
269
structure length
269
Chain Sequence
KLDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKNYDDDGITYLFDLDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Cryptic loci regulator 4
publication title Structure of the SET domain histone lysine methyltransferase Clr4.
pubmed rcsb
source organism Schizosaccharomyces pombe
total genus 60
structure length 269
sequence length 269
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2002-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 1mvhA00
5KJLA 5EX3A 3M57A 3S7BA 3DALA 3OOIA 4QEPA 5CCMA 1ML9A 3K5KA 4YPAA 3CBPA 1PEGA 3DB5A 5EG2A 3RIBA 4O6FA 4YPEA 4J8OA 3KMJA 1MVXA 2F69A 4YNMA 4IJDA 5F5EA 2BQZA 3KMAA 3CBMA 4NJ5A 5T5GA 3OXFA 5CPRB 3QWPA 3OXGA 3QWVA 4LDGA 4NVQA 4JLGA 3N71A 5EX0A 4H12A 4JDSA 5TH7A 5F59A 5T0MA 5TTFA 4C1QA 3KMTA 3M58A 3RQ4A 4RZ0A 5KJMA 4J7FA 1N6CA 1O9SA 4J83A 3RAYA 2IGQA 5JHNA 4YNDA 3M59A 3F9YA 3TG5A 4MI5A 1N6AA 4J7IA 5JINA 3QWWA 3F9XA 5JIYA 5ARGA 4E47A 3RJWA 1H3IA 3S7DA 5AYFA 3RU0A 3S7FA 5KJNA 3M53A 3F9WA 1MVHA 1XQHA 3VV0A 3M56A 3BO5A 3MEKA 3SW9A 4QENA 3PDNA 3M54A 3SWCA 5CCLA 5LSXA 1MT6A 3OS5A 3OPEA 3VUZA 2O8JA 5KJKA 3S8PA 4BUPA 3MO2A 2R3AA 3OXLA 3HNAA 3M55A 1N3JA 3EP0A 3MO0A 2QPWA 5JJ0A 2W5YA 3F9ZA 2RFIA 4FMUA 5F6KC 1ZKKA 1MUFA 4O30A 5T0KA 3TG4A 4MI0A 5ARFA 5TEGA 4WUYA 2JV0A 2W5ZA 3CBOA 4I51A 5HQ8A 3M5AA 4Z4PA 4AU7A 5LSZA 5HI7A 3MO5A 4YPUA 5F6LA 4YNPA 3FPDA 2G46A 3IHXA 4QEOA 4IJ8A 3S7JA
chains in the Genus database with same CATH superfamily
5KJLA 5EX3A 3M57A 3S7BA 3DALA 3OOIA 4QEPA 5CCMA 1ML9A 3K5KA 4YPAA 3CBPA 1PEGA 3DB5A 5EG2A 3RIBA 4O6FA 4YPEA 4J8OA 3KMJA 1MVXA 2F69A 4YNMA 4IJDA 5F5EA 2BQZA 3KMAA 3CBMA 4NJ5A 5T5GA 3OXFA 5CPRB 3QWPA 3OXGA 3QWVA 4LDGA 4NVQA 4JLGA 3N71A 5EX0A 4H12A 4JDSA 5TH7A 5F59A 5T0MA 5TTFA 4C1QA 3KMTA 3M58A 3RQ4A 4RZ0A 5KJMA 4J7FA 1N6CA 1O9SA 4J83A 3RAYA 2IGQA 5JHNA 4YNDA 3M59A 3F9YA 3TG5A 4MI5A 1N6AA 4J7IA 5JINA 3QWWA 3F9XA 5JIYA 5ARGA 4E47A 3RJWA 1H3IA 3S7DA 5AYFA 3RU0A 3S7FA 5KJNA 3M53A 3F9WA 1MVHA 1XQHA 3VV0A 3M56A 3BO5A 3MEKA 3SW9A 4QENA 3PDNA 3M54A 3SWCA 5CCLA 5LSXA 1MT6A 3OS5A 3OPEA 3VUZA 2O8JA 5KJKA 3S8PA 4BUPA 3MO2A 2R3AA 3OXLA 3HNAA 3M55A 1N3JA 3EP0A 3MO0A 2QPWA 5JJ0A 2W5YA 3F9ZA 2RFIA 4FMUA 5F6KC 1ZKKA 1MUFA 4O30A 5T0KA 3TG4A 4MI0A 5ARFA 5TEGA 4WUYA 2JV0A 2W5ZA 3CBOA 4I51A 5HQ8A 3M5AA 4Z4PA 4AU7A 5LSZA 5HI7A 3MO5A 4YPUA 5F6LA 4YNPA 3FPDA 2G46A 3IHXA 4QEOA 4IJ8A 3S7JA
chains in the Genus database with same CATH topology
5KJLA 5EX3A 3M57A 3S7BA 3DALA 3OOIA 4QEPA 5CCMA 1ML9A 3K5KA 4YPAA 3CBPA 1PEGA 3DB5A 5EG2A 3RIBA 4O6FA 4YPEA 4J8OA 3KMJA 1MVXA 2F69A 4YNMA 4IJDA 5F5EA 2BQZA 3KMAA 3CBMA 4NJ5A 5T5GA 3OXFA 5CPRB 3QWPA 3OXGA 3QWVA 4LDGA 4NVQA 4JLGA 3N71A 5EX0A 4H12A 4JDSA 5TH7A 5F59A 5T0MA 5TTFA 4C1QA 3KMTA 3M58A 3RQ4A 4RZ0A 5KJMA 4J7FA 1N6CA 1O9SA 4J83A 3RAYA 2IGQA 5JHNA 4YNDA 3M59A 3F9YA 3TG5A 4MI5A 1N6AA 4J7IA 5JINA 3QWWA 3F9XA 5JIYA 5ARGA 4E47A 3RJWA 1H3IA 3S7DA 5AYFA 3RU0A 3S7FA 5KJNA 3M53A 3F9WA 1MVHA 1XQHA 3VV0A 3M56A 3BO5A 3MEKA 3SW9A 4QENA 3PDNA 3M54A 3SWCA 5CCLA 5LSXA 1MT6A 3OS5A 3OPEA 3VUZA 2O8JA 5KJKA 3S8PA 4BUPA 3MO2A 2R3AA 3OXLA 3HNAA 3M55A 1N3JA 3EP0A 3MO0A 2QPWA 5JJ0A 2W5YA 3F9ZA 2RFIA 4FMUA 5F6KC 1ZKKA 1MUFA 4O30A 5T0KA 3TG4A 4MI0A 5ARFA 5TEGA 4WUYA 2JV0A 2W5ZA 3CBOA 4I51A 5HQ8A 3M5AA 4Z4PA 4AU7A 5LSZA 5HI7A 3MO5A 4YPUA 5F6LA 4YNPA 3FPDA 2G46A 3IHXA 4QEOA 4IJ8A 3S7JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KJL A;  5EX3 A;  3M57 A;  3S7B A;  3DAL A;  3OOI A;  4QEP A;  5CCM A;  1ML9 A;  3K5K A;  4YPA A;  3CBP A;  1PEG A;  3DB5 A;  5EG2 A;  3RIB A;  4O6F A;  4YPE A;  4J8O A;  3KMJ A;  1MVX A;  2F69 A;  4YNM A;  4IJD A;  5F5E A;  2BQZ A;  3KMA A;  3CBM A;  4NJ5 A;  5T5G A;  3OXF A;  5CPR B;  3QWP A;  3OXG A;  3QWV A;  4LDG A;  4NVQ A;  4JLG A;  3N71 A;  5EX0 A;  4H12 A;  4JDS A;  5TH7 A;  5F59 A;  5T0M A;  5TTF A;  4C1Q A;  3KMT A;  3M58 A;  3RQ4 A;  4RZ0 A;  5KJM A;  4J7F A;  1N6C A;  1O9S A;  4J83 A;  3RAY A;  2IGQ A;  5JHN A;  4YND A;  3M59 A;  3F9Y A;  3TG5 A;  4MI5 A;  1N6A A;  4J7I A;  5JIN A;  3QWW A;  3F9X A;  5JIY A;  5ARG A;  4E47 A;  3RJW A;  1H3I A;  3S7D A;  5AYF A;  3RU0 A;  3S7F A;  5KJN A;  3M53 A;  3F9W A;  1MVH A;  1XQH A;  3VV0 A;  3M56 A;  3BO5 A;  3MEK A;  3SW9 A;  4QEN A;  3PDN A;  3M54 A;  3SWC A;  5CCL A;  5LSX A;  1MT6 A;  3OS5 A;  3OPE A;  3VUZ A;  2O8J A;  5KJK A;  3S8P A;  4BUP A;  3MO2 A;  2R3A A;  3OXL A;  3HNA A;  3M55 A;  1N3J A;  3EP0 A;  3MO0 A;  2QPW A;  5JJ0 A;  2W5Y A;  3F9Z A;  2RFI A;  4FMU A;  5F6K C;  1ZKK A;  1MUF A;  4O30 A;  5T0K A;  3TG4 A;  4MI0 A;  5ARF A;  5TEG A;  4WUY A;  2JV0 A;  2W5Z A;  3CBO A;  4I51 A;  5HQ8 A;  3M5A A;  4Z4P A;  4AU7 A;  5LSZ A;  5HI7 A;  3MO5 A;  4YPU A;  5F6L A;  4YNP A;  3FPD A;  2G46 A;  3IHX A;  4QEO A;  4IJ8 A;  3S7J A; 
#chains in the Genus database with same CATH topology
 5KJL A;  5EX3 A;  3M57 A;  3S7B A;  3DAL A;  3OOI A;  4QEP A;  5CCM A;  1ML9 A;  3K5K A;  4YPA A;  3CBP A;  1PEG A;  3DB5 A;  5EG2 A;  3RIB A;  4O6F A;  4YPE A;  4J8O A;  3KMJ A;  1MVX A;  2F69 A;  4YNM A;  4IJD A;  5F5E A;  2BQZ A;  3KMA A;  3CBM A;  4NJ5 A;  5T5G A;  3OXF A;  5CPR B;  3QWP A;  3OXG A;  3QWV A;  4LDG A;  4NVQ A;  4JLG A;  3N71 A;  5EX0 A;  4H12 A;  4JDS A;  5TH7 A;  5F59 A;  5T0M A;  5TTF A;  4C1Q A;  3KMT A;  3M58 A;  3RQ4 A;  4RZ0 A;  5KJM A;  4J7F A;  1N6C A;  1O9S A;  4J83 A;  3RAY A;  2IGQ A;  5JHN A;  4YND A;  3M59 A;  3F9Y A;  3TG5 A;  4MI5 A;  1N6A A;  4J7I A;  5JIN A;  3QWW A;  3F9X A;  5JIY A;  5ARG A;  4E47 A;  3RJW A;  1H3I A;  3S7D A;  5AYF A;  3RU0 A;  3S7F A;  5KJN A;  3M53 A;  3F9W A;  1MVH A;  1XQH A;  3VV0 A;  3M56 A;  3BO5 A;  3MEK A;  3SW9 A;  4QEN A;  3PDN A;  3M54 A;  3SWC A;  5CCL A;  5LSX A;  1MT6 A;  3OS5 A;  3OPE A;  3VUZ A;  2O8J A;  5KJK A;  3S8P A;  4BUP A;  3MO2 A;  2R3A A;  3OXL A;  3HNA A;  3M55 A;  1N3J A;  3EP0 A;  3MO0 A;  2QPW A;  5JJ0 A;  2W5Y A;  3F9Z A;  2RFI A;  4FMU A;  5F6K C;  1ZKK A;  1MUF A;  4O30 A;  5T0K A;  3TG4 A;  4MI0 A;  5ARF A;  5TEG A;  4WUY A;  2JV0 A;  2W5Z A;  3CBO A;  4I51 A;  5HQ8 A;  3M5A A;  4Z4P A;  4AU7 A;  5LSZ A;  5HI7 A;  3MO5 A;  4YPU A;  5F6L A;  4YNP A;  3FPD A;  2G46 A;  3IHX A;  4QEO A;  4IJ8 A;  3S7J A; 
#chains in the Genus database with same CATH homology
 5KJL A;  5EX3 A;  3M57 A;  3S7B A;  3DAL A;  3OOI A;  4QEP A;  5CCM A;  1ML9 A;  3K5K A;  4YPA A;  3CBP A;  1PEG A;  3DB5 A;  5EG2 A;  3RIB A;  4O6F A;  4YPE A;  4J8O A;  3KMJ A;  1MVX A;  2F69 A;  4YNM A;  4IJD A;  5F5E A;  2BQZ A;  3KMA A;  3CBM A;  4NJ5 A;  5T5G A;  3OXF A;  5CPR B;  3QWP A;  3OXG A;  3QWV A;  4LDG A;  4NVQ A;  4JLG A;  3N71 A;  5EX0 A;  4H12 A;  4JDS A;  5TH7 A;  5F59 A;  5T0M A;  5TTF A;  4C1Q A;  3KMT A;  3M58 A;  3RQ4 A;  4RZ0 A;  5KJM A;  4J7F A;  1N6C A;  1O9S A;  4J83 A;  3RAY A;  2IGQ A;  5JHN A;  4YND A;  3M59 A;  3F9Y A;  3TG5 A;  4MI5 A;  1N6A A;  4J7I A;  5JIN A;  3QWW A;  3F9X A;  5JIY A;  5ARG A;  4E47 A;  3RJW A;  1H3I A;  3S7D A;  5AYF A;  3RU0 A;  3S7F A;  5KJN A;  3M53 A;  3F9W A;  1MVH A;  1XQH A;  3VV0 A;  3M56 A;  3BO5 A;  3MEK A;  3SW9 A;  4QEN A;  3PDN A;  3M54 A;  3SWC A;  5CCL A;  5LSX A;  1MT6 A;  3OS5 A;  3OPE A;  3VUZ A;  2O8J A;  5KJK A;  3S8P A;  4BUP A;  3MO2 A;  2R3A A;  3OXL A;  3HNA A;  3M55 A;  1N3J A;  3EP0 A;  3MO0 A;  2QPW A;  5JJ0 A;  2W5Y A;  3F9Z A;  2RFI A;  4FMU A;  5F6K C;  1ZKK A;  1MUF A;  4O30 A;  5T0K A;  3TG4 A;  4MI0 A;  5ARF A;  5TEG A;  4WUY A;  2JV0 A;  2W5Z A;  3CBO A;  4I51 A;  5HQ8 A;  3M5A A;  4Z4P A;  4AU7 A;  5LSZ A;  5HI7 A;  3MO5 A;  4YPU A;  5F6L A;  4YNP A;  3FPD A;  2G46 A;  3IHX A;  4QEO A;  4IJ8 A;  3S7J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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