1N0FA

Crystal structure of a cell division and cell wall biosynthesis protein upf0040 from mycoplasma pneumoniae: indication of a novel fold with a possible new conserved sequence motif
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
141
structure length
141
Chain Sequence
FQGHMLLGTFNITLDAKNRISLPAKLRAFFEGSIVINRGFENCLEVRKPQDFQKYFEQFNSFPSTQKDTRTLKRLIFANANFVDVDTAGRVLIPNNLINDAKLDKEIVLIGQFDHLEIWDKKLYEDYLANSESLETVAERM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.
pubmed doi rcsb
molecule tags Biosynthetic protein
source organism Mycoplasma pneumoniae
molecule keywords Protein mraZ
total genus 30
structure length 141
sequence length 141
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2002-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02381 MraZ MraZ protein, putative antitoxin-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.330.20 Mainly Beta Beta Barrel At1g16640 B3 domain At1g16640 B3 domain 1n0fA00
1N0EA 1N0GA 1N0FA
chains in the Genus database with same CATH superfamily
4I1KA 4LDVA 1NA6A 3ZI5A 1N0GA 1N0FA 1N0EA 3HQFA 1YELA 4LDWA 2C1LA 4LDXA 1WIDA 4LDYA 4LDUA
chains in the Genus database with same CATH topology
3ZI5A 1N0GA 1N0FA 1N0EA 2C1LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N0E A;  1N0G A;  1N0F A; 
#chains in the Genus database with same CATH topology
 4I1K A;  4LDV A;  1NA6 A;  3ZI5 A;  1N0G A;  1N0F A;  1N0E A;  3HQF A;  1YEL A;  4LDW A;  2C1L A;  4LDX A;  1WID A;  4LDY A;  4LDU A; 
#chains in the Genus database with same CATH homology
 3ZI5 A;  1N0G A;  1N0F A;  1N0E A;  2C1L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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