The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
50
|
sequence length |
238
|
structure length |
228
|
Chain Sequence |
PKVPPGPNITATYGDKWLDAKSTWYGGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
X-ray Crystal Structure of Phl p 1, a Major Timothy Grass Pollen Allergen
rcsb |
| molecule tags |
Allergen
|
| source organism |
Phleum pratense
|
| molecule keywords |
Pollen allergen Phl p 1
|
| total genus |
50
|
| structure length |
228
|
| sequence length |
238
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2002-10-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01357 | Pollen_allerg_1 | Pollen allergen |
| A | PF03330 | DPBB_1 | Lytic transglycolase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | Barwin-like endoglucanases | RlpA-like domain | ||
| Mainly Beta | Sandwich | Immunoglobulin-like | Expansin, cellulose-binding-like domain |
