1N36D

Structure of the thermus thermophilus 30s ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
total genus 39
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2002-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 1n36D01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1n36D02
1KSKA 4JI2D 1FJGD 4JV5D 1P9KA 4DR3D 4JI7D 4YY3D 1IBMD 4JI4D 2HHHD 4DR1D 4DV5D 1XMOD 4NXMD 1H3EA 4GKJD 2UUAD 2UUCD 4X64D 4KHPD 4DR4D 1N32D 4DV3D 4LFCD 3KBGA 2K6PA 5LMUD 4OX9D 4B3MD 3T1HD 3DH3A 4JI6D 1JH3A 4DV1D 4DV2D 2UXCD 4LF6D 4X65D 1IBLD 1KSLA 4NXND 2UU9D 4DV4D 3OTOD 4LGTA 4JI3D 1DM9A 4JI8D 4OUDA 4DV0D 2F4VD 2ISTA 4LFBD 4LF8D 4YHHD 4JYAD 1XMQD 4JI0D 4B3TD 4DUZD 1C05A 2UXBD 1N36D 1HR0D 4DUYD 2JANA 2E5LD 4DR5D 2VQFD 1KSVA 4JI5D 4AQYD 4DR7D 4X66D 1I94D 1XNRD 4LF7D 1HNWD 4DR2D 1N34D 1H3FA 1XNQD 4B3RD 1IBKD 4DV6D 4K0KD 4LF5D 4GKKD 4DR6D 3HP7A 4LFAD 2KTLA 1C06A 4DV7D 1FKAD 1J5ED 2ZM6D 5IWAD 4B3SD 1VIOA 5BR8D 4X62D 1HNXD 2UXDD 2VQED 4LF4D 4JI1D 3T1YD 5LMND 1HNZD 4LF9D 1N33D 2UUBD
chains in the Genus database with same CATH superfamily
1KSKA 4JI2D 1FJGD 4JV5D 1P9KA 4W5VB 4DR3D 2LQ7A 4JI7D 4YY3D 1IBMD 4JI4D 2HHHD 4DR1D 4DV5D 1XMOD 4NXMD 1H3EA 3CMMA 2I1SA 5KNLA 4GKJD 2UUAD 2UUCD 3ONHA 4X64D 4KHPD 4DR4D 5LL6S 1N32D 4DV3D 5IT9E 2L3NA 4LFCD 3KBGA 2K6PA 5LMUD 3ONGA 4NNJA 4OX9D 3J81E 4B3MD 3T1HD 3DH3A 4JI6D 1JH3A 4DV1D 4DV2D 2UXCD 1Y8XB 5FQ2B 4LF6D 4X65D 1IBLD 1KSLA 4NXND 2UU9D 4DV4D 3OTOD 4LGTA 4JI3D 3KYCB 1DM9A 1Y8QB 4JI8D 4OUDA 2ZTBA 4DV0D 2F4VD 2ISTA 4LFBD 4LF8D 4YHHD 4JYAD 1XMQD 4JI0D 4B3TD 3J80E 4DUZD 1C05A 2UXBD 1N36D 1HR0D 5FLXE 3FN1A 4DUYD 2JANA 3JAME 4II3A 2E5LD 4DR5D 2VQFD 1KSVA 4JI5D 4AQYD 4DR7D 4X66D 1I94D 1XNRD 4LF7D 1HNWD 4DR2D 1N34D 1H3FA 3KYDB 1XNQD 4B3RD 1IBKD 4DV6D 4K0KD 4LF5D 4GKKD 4DR6D 3HP7A 4LFAD 2KTLA 1C06A 4DV7D 1FKAD 2NVUB 4II2A 1Y8RB 1J5ED 2ZM6D 5IWAD 4B3SD 1VIOA 5BR8D 4X62D 1HNXD 2UXDD 2VQED 4LF4D 5A2QE 3J7AF 4JI1D 3T1YD 5LMND 1HNZD 4LF9D 1N33D 2UUBD
chains in the Genus database with same CATH topology
1KSKA 4JI2D 1FJGD 4JV5D 1P9KA 4DR3D 4JI7D 4YY3D 1IBMD 4JI4D 2HHHD 4DR1D 4DV5D 1XMOD 4NXMD 1H3EA 4GKJD 2UUAD 2UUCD 4X64D 4KHPD 4DR4D 1N32D 4DV3D 2L3NA 4LFCD 3KBGA 2K6PA 5LMUD 4OX9D 4B3MD 3T1HD 3DH3A 4JI6D 1JH3A 4DV1D 4DV2D 2UXCD 4LF6D 4X65D 1IBLD 1KSLA 4NXND 2UU9D 4DV4D 3OTOD 4LGTA 4JI3D 1DM9A 4JI8D 4OUDA 4DV0D 2F4VD 2ISTA 4LFBD 4LF8D 4YHHD 4JYAD 1XMQD 4JI0D 4B3TD 4DUZD 1C05A 2UXBD 1N36D 1HR0D 4DUYD 2JANA 2E5LD 4DR5D 2VQFD 1KSVA 4JI5D 4AQYD 4DR7D 4X66D 1I94D 1XNRD 4LF7D 1HNWD 4DR2D 1N34D 1H3FA 1XNQD 4B3RD 1IBKD 4DV6D 4K0KD 4LF5D 4GKKD 4DR6D 3HP7A 4LFAD 2KTLA 1C06A 4DV7D 1FKAD 1J5ED 2ZM6D 5IWAD 4B3SD 1VIOA 5BR8D 4X62D 1HNXD 2UXDD 2VQED 4LF4D 4JI1D 3T1YD 5LMND 1HNZD 4LF9D 1N33D 2UUBD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KSK A;  4JI2 D;  1FJG D;  4JV5 D;  1P9K A;  4DR3 D;  4JI7 D;  4YY3 D;  1IBM D;  4JI4 D;  2HHH D;  4DR1 D;  4DV5 D;  1XMO D;  4NXM D;  1H3E A;  4GKJ D;  2UUA D;  2UUC D;  4X64 D;  4KHP D;  4DR4 D;  1N32 D;  4DV3 D;  4LFC D;  3KBG A;  2K6P A;  5LMU D;  4OX9 D;  4B3M D;  3T1H D;  3DH3 A;  4JI6 D;  1JH3 A;  4DV1 D;  4DV2 D;  2UXC D;  4LF6 D;  4X65 D;  1IBL D;  1KSL A;  4NXN D;  2UU9 D;  4DV4 D;  3OTO D;  4LGT A;  4JI3 D;  1DM9 A;  4JI8 D;  4OUD A;  4DV0 D;  2F4V D;  2IST A;  4LFB D;  4LF8 D;  4YHH D;  4JYA D;  1XMQ D;  4JI0 D;  4B3T D;  4DUZ D;  1C05 A;  2UXB D;  1N36 D;  1HR0 D;  4DUY D;  2JAN A;  2E5L D;  4DR5 D;  2VQF D;  1KSV A;  4JI5 D;  4AQY D;  4DR7 D;  4X66 D;  1I94 D;  1XNR D;  4LF7 D;  1HNW D;  4DR2 D;  1N34 D;  1H3F A;  1XNQ D;  4B3R D;  1IBK D;  4DV6 D;  4K0K D;  4LF5 D;  4GKK D;  4DR6 D;  3HP7 A;  4LFA D;  2KTL A;  1C06 A;  4DV7 D;  1FKA D;  1J5E D;  2ZM6 D;  5IWA D;  4B3S D;  1VIO A;  5BR8 D;  4X62 D;  1HNX D;  2UXD D;  2VQE D;  4LF4 D;  4JI1 D;  3T1Y D;  5LMN D;  1HNZ D;  4LF9 D;  1N33 D;  2UUB D; 
#chains in the Genus database with same CATH topology
 1KSK A;  4JI2 D;  1FJG D;  4JV5 D;  1P9K A;  4W5V B;  4DR3 D;  2LQ7 A;  4JI7 D;  4YY3 D;  1IBM D;  4JI4 D;  2HHH D;  4DR1 D;  4DV5 D;  1XMO D;  4NXM D;  1H3E A;  3CMM A;  2I1S A;  5KNL A;  4GKJ D;  2UUA D;  2UUC D;  3ONH A;  4X64 D;  4KHP D;  4DR4 D;  5LL6 S;  1N32 D;  4DV3 D;  5IT9 E;  2L3N A;  4LFC D;  3KBG A;  2K6P A;  5LMU D;  3ONG A;  4NNJ A;  4OX9 D;  3J81 E;  4B3M D;  3T1H D;  3DH3 A;  4JI6 D;  1JH3 A;  4DV1 D;  4DV2 D;  2UXC D;  1Y8X B;  5FQ2 B;  4LF6 D;  4X65 D;  1IBL D;  1KSL A;  4NXN D;  2UU9 D;  4DV4 D;  3OTO D;  4LGT A;  4JI3 D;  3KYC B;  1DM9 A;  1Y8Q B;  4JI8 D;  4OUD A;  2ZTB A;  4DV0 D;  2F4V D;  2IST A;  4LFB D;  4LF8 D;  4YHH D;  4JYA D;  1XMQ D;  4JI0 D;  4B3T D;  3J80 E;  4DUZ D;  1C05 A;  2UXB D;  1N36 D;  1HR0 D;  5FLX E;  3FN1 A;  4DUY D;  2JAN A;  3JAM E;  4II3 A;  2E5L D;  4DR5 D;  2VQF D;  1KSV A;  4JI5 D;  4AQY D;  4DR7 D;  4X66 D;  1I94 D;  1XNR D;  4LF7 D;  1HNW D;  4DR2 D;  1N34 D;  1H3F A;  3KYD B;  1XNQ D;  4B3R D;  1IBK D;  4DV6 D;  4K0K D;  4LF5 D;  4GKK D;  4DR6 D;  3HP7 A;  4LFA D;  2KTL A;  1C06 A;  4DV7 D;  1FKA D;  2NVU B;  4II2 A;  1Y8R B;  1J5E D;  2ZM6 D;  5IWA D;  4B3S D;  1VIO A;  5BR8 D;  4X62 D;  1HNX D;  2UXD D;  2VQE D;  4LF4 D;  5A2Q E;  3J7A F;  4JI1 D;  3T1Y D;  5LMN D;  1HNZ D;  4LF9 D;  1N33 D;  2UUB D; 
#chains in the Genus database with same CATH homology
 1KSK A;  4JI2 D;  1FJG D;  4JV5 D;  1P9K A;  4DR3 D;  4JI7 D;  4YY3 D;  1IBM D;  4JI4 D;  2HHH D;  4DR1 D;  4DV5 D;  1XMO D;  4NXM D;  1H3E A;  4GKJ D;  2UUA D;  2UUC D;  4X64 D;  4KHP D;  4DR4 D;  1N32 D;  4DV3 D;  2L3N A;  4LFC D;  3KBG A;  2K6P A;  5LMU D;  4OX9 D;  4B3M D;  3T1H D;  3DH3 A;  4JI6 D;  1JH3 A;  4DV1 D;  4DV2 D;  2UXC D;  4LF6 D;  4X65 D;  1IBL D;  1KSL A;  4NXN D;  2UU9 D;  4DV4 D;  3OTO D;  4LGT A;  4JI3 D;  1DM9 A;  4JI8 D;  4OUD A;  4DV0 D;  2F4V D;  2IST A;  4LFB D;  4LF8 D;  4YHH D;  4JYA D;  1XMQ D;  4JI0 D;  4B3T D;  4DUZ D;  1C05 A;  2UXB D;  1N36 D;  1HR0 D;  4DUY D;  2JAN A;  2E5L D;  4DR5 D;  2VQF D;  1KSV A;  4JI5 D;  4AQY D;  4DR7 D;  4X66 D;  1I94 D;  1XNR D;  4LF7 D;  1HNW D;  4DR2 D;  1N34 D;  1H3F A;  1XNQ D;  4B3R D;  1IBK D;  4DV6 D;  4K0K D;  4LF5 D;  4GKK D;  4DR6 D;  3HP7 A;  4LFA D;  2KTL A;  1C06 A;  4DV7 D;  1FKA D;  1J5E D;  2ZM6 D;  5IWA D;  4B3S D;  1VIO A;  5BR8 D;  4X62 D;  1HNX D;  2UXD D;  2VQE D;  4LF4 D;  4JI1 D;  3T1Y D;  5LMN D;  1HNZ D;  4LF9 D;  1N33 D;  2UUB D; 
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similar chains in the pdb database (?% sequence similarity)

 
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