1N3GA

Solution structure of the ribosome-associated cold shock response protein yfia of escherichia coli
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
113
structure length
113
Chain Sequence
b'MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein yfiA
publication title Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
total genus 24
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1n3gA01
4HEIA 2YWQA 1IMUA 1L4SA 1N3GA 3TQMA 2RQLA
chains in the Genus database with same CATH superfamily
1MEYC 2V83A 3IWDA 4B3ME 2DLQA 4IS1C 2ADRA 4TUGA 2M4IA 3C6MA 4JI2E 3J7AG 2V88A 2V87A 4BMJA 4M9VC 1A1KA 2JOXA 2EL5A 2JXPA 2M1SA 2V86A 2E5LE 4KWYA 4JI0E 2EM4A 4DKKA 1PJSA 4DR7E 1HNXE 2L2MA 4JV5E 2PRTA 2EOZA 2M9AA 4M2ZA 3DJWA 2WZOA 4WSGA 1YYOA 4WXDA 2EOQA 4R2CA 2EN7A 1UN6B 4WFTA 2EOFA 3VYXA 2HHHE 4LF4E 2F4VE 1ZR9A 2EN8A 4M0VA 5F3WA 2BB8A 4F54A 4F2JC 5AC4A 3MSWA 3ADGA 2WBTA 3THNA 3J7Yp 2CTDA 4O4KA 3BIDA 5LMNE 1JK2A 2YTJA 3ZOQB 4ZYHA 1EH7A 2NA2A 3VYYA 2EN6A 2EM0A 2JWOA 1WHNA 2ODRC 4DV3E 4GEQB 2EPXA 3J81C 2EWLA 4JYAE 4X65E 2EM3A 2L2NA 4X64E 2YTDA 2VQEE 2EPOA 4R03A 3VHTB 2EM8A 5KL7A 2F8BA 4DV5E 1UBDC 4L8NA 4R2DA 4HTGA 2EN3A 2LTSA 2EN1A 2V85A 1I94E 3EQ1A 4M30A 1YFHA 1FJGE 2EPUA 2N8XA 3RMPA 3JAMC 2KHXA 2CSHA 2EMYA 2JPAA 2LCEA 3KWRA 1WJPA 3VK6A 2ENAA 1IQSA 2LV2A 1DI2A 2EMWA 4GZNC 3HPZA 2EN4A 4BC7A 2YPNA 1T4OA 3ADIA 4JI5E 1IBME 4X66E 4R2EA 2DRPA 1N3GA 2L3CA 4B3RE 4DR1E 4JI4E 1MGTA 3P1XA 2EOJA 2KOUA 1RQ0A 2DMIA 1UHZA 2EPMX 2L6MA 4P7DA 2RS7A 1WXRA 3ADJA 2L33A 1X5WA 2K4VA 5IT9C 2J7JA 1AAYA 2EZ6A 2FTXB 1X49A 1X6EA 5A6JA 1A1LA 4F6MA 4HEIA 2LE2A 2RSMA 3BBGA 2L92A 2B3TB 1XNRE 2ODRD 2L8TA 2DIXA 4FK5C 5IV8B 1F2IG 5AC5A 3KZYA 2LUQA 2EPPA 2EMAA 2V89A 4O5GA 2M7QA 4BHBA 1EH6A 3OMLA 2MDGA 2YTIA 2EJ4A 1HNZE 3AV0A 2I9IA 5KL6A 2HC5A 2LO3A 5CFFE 4WSPA 2FV4B 2HJJA 1XNQE 1GQEA 1X6FA 2E1MA 1X6HA 4OOGC 4LFBE 2RS6A 1A1JA 2L2KB 5AE3A 2UU9E 2EPKX 2E72A 1A1IA 4Q28A 1QNTA 3C6KA 3EPKA 1T39A 4R2AA 4ZYEA 3F6HA 3MHSC 2RPCA 2YRMA 3L00A 2YSPA 5KL5A 3HTXA 3EPJA 4GKKE 2DMYA 2EP3A 2EPCA 4BC9A 1XMOE 4RH8A 1N34E 2L3JA 2VRDA 2G7HA 2V8QB 4WX9A 4DV2E 2I13A 2RQLA 2YSOA 1HR0E 2EPAA 2DSYA 2JP9A 3JU0A 4DV0E 2UUCE 3C4TA 4MLVA 4NZVA 2UUBE 4ZYDA 2EOSA 3FIGA 2DB2A 1NCSA 4LFCE 5LLQA 2LBSB 4TUIA 2JVAA 2JR1A 2FGGA 2EMKA 2NUEA 4JI6E 2EE8A 2EOEA 2EPRA 1Z1BA 2WBUA 2D9HA 1EH8A 4LF7E 2EQ0A 2YTGA 1PKPA 4DR5E 1XMQE 2R1FA 4WXCA 4L5NC 5AE2A 4IJDA 1PJTA 2BBGA 3ECRA 5LL6R 2B7VA 3JTZA 4F6NA 4LFAE 1UILA 5KL4A 2WBSA 2YU8A 2EOIA 2IHR1 1EKZA 3HQ1A 2EM5A 3LMLA 1RC7A 5DNYA 5A69A 2CT1A 3IWBA 4JI3E 2EMHA 1IBLE 1A1FA 4O43A 4DV1E 1ZU1A 3DF6A 1N36E 2YTFA 5IWAE 1HNWE 2B7TA 4LF5E 1YPNA 4I8OA 1DQ3A 1SR9A 2N3HA 2YRHA 2EMFA 4DR3E 2EMCA 4X9JA 4BBYA 4LTYA 4JI1E 1X48A 2DLKA 2YWQA 4B3SE 4BHCA 5A6AA 2JOBA 1PDAA 2H36X 3HPSA 5IXMB 3HXLA 2LTRA 5ADZA 2YTQA 1QU6A 2EOMA 2LMZA 1JK1A 1PJQA 4DR6E 3MHHC 4KHPE 2YTPA 5A2QC 2DGCA 1J5EE 4ZYGA 1N32E 3H09A 2MC5A 2MKNA 4Q35B 2GPIA 2UXBE 2Q8UA 1P47A 4P78A 1T4LB 1YYKA 5BR8E 4DV4E 3IWCA 4R2PA 2CPNA 4J8ZA 3THOB 4LU9A 4YHHE 2EL6A 1KYQA 2ELYA 2LT7A 2JY9A 4R2RA 4WYQB 4WPYA 2LRSA 4X8WA 3F6GA 2A25A 5AASA 4NXNE 4MLQA 4GKJE 5A6KA 2UUAE 3TQMA 3EPLA 4B3TE 4DR2E 1DGCA 4F9BB 5KL3A 3BGHA 4DV6E 2NABA 2MC6A 4BS9A 4R2QA 2GHFA 3M99B 3T1YE 1GZ6A 1IBKE 2LJHA 4DMIA 2EORA 2N3GA 2YTOA 1A1HA 5FLXC 3KZZA 2LVHA 3C4BA 4DUZE 2EM7A 4NXME 2EMBA 1ZBTA 4YY3E 2MKDA 2ENCA 4DV7E 1LLMC 1NEIA 2VQFE 3BF2A 2EMGA 2WCC3 4LF9E 1IMUA 2GLIA 1STUA 3T1HE 4RHBB 2EOXA 1BBGA 3AUZA 4LF6E 4F9CB 1WHQA 1G2FC 1TF3A 1BBOA 4NHRA 5TSEA 2YU5A 3LLHA 2EOOA 4AQYE 1B69A 5T6JA 4JI8E 5KL2A 4OX9E 4K0KE 2JYAA 3K6QA 1T38A 2MDRA 1TN9A 1N33E 2EOHA 2ENHA 4O24A 4JI7E 2RSIA 2VF1A 2EOYA 3QG5C 2EM9A 2K7IA 1YUIA 4N4RB 2ZM6E 2RTXA 5A6BD 4X62E 1L4SA 2YTEA 1SFEA 2NUGA 2EN2A 1GTKA 2EQ3A 4KZSA 2NUFA 1X3CA 1G2DC 3J80C 2EL4A 3UK3C 2EMIA 2LUPB 1A1GA 1YUJA 4DUYE 3EPHA 2R76A 1ZBQA 1KJKA 1YZ9A 2EPLX 1AH5A 2LJUA 2YRKA 2EQ1A 4R2SA 2EPZA 2EMZA 1IQOA 2EPNA 3OTOE 5LMUE 1T4NA 1X47A 2YTNA 4R8OA 2UXCE 3ADLA 2EMLA 4DR4E 1YSAC 2YT4A 1TF6A 2VE7C 4BCAA 2HGHA 1J26A 2EMXA 1FKAE 5A6BA 1BB8A 2B9DA 4F9AB 2ELZA 2EM2A 4LF8E 2UXDE 1YYWA 1RMDA 2KONA 1O0WA 5AE1A 2YZTA 1ZAAC 2EM6A 1WRJA
chains in the Genus database with same CATH topology
4HEIA 2YWQA 1IMUA 1L4SA 1N3GA 3TQMA 2RQLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HEI A;  2YWQ A;  1IMU A;  1L4S A;  1N3G A;  3TQM A;  2RQL A; 
#chains in the Genus database with same CATH topology
 1MEY C;  2V83 A;  3IWD A;  4B3M E;  2DLQ A;  4IS1 C;  2ADR A;  4TUG A;  2M4I A;  3C6M A;  4JI2 E;  3J7A G;  2V88 A;  2V87 A;  4BMJ A;  4M9V C;  1A1K A;  2JOX A;  2EL5 A;  2JXP A;  2M1S A;  2V86 A;  2E5L E;  4KWY A;  4JI0 E;  2EM4 A;  4DKK A;  1PJS A;  4DR7 E;  1HNX E;  2L2M A;  4JV5 E;  2PRT A;  2EOZ A;  2M9A A;  4M2Z A;  3DJW A;  2WZO A;  4WSG A;  1YYO A;  4WXD A;  2EOQ A;  4R2C A;  2EN7 A;  1UN6 B;  4WFT A;  2EOF A;  3VYX A;  2HHH E;  4LF4 E;  2F4V E;  1ZR9 A;  2EN8 A;  4M0V A;  5F3W A;  2BB8 A;  4F54 A;  4F2J C;  5AC4 A;  3MSW A;  3ADG A;  2WBT A;  3THN A;  3J7Y p;  2CTD A;  4O4K A;  3BID A;  5LMN E;  1JK2 A;  2YTJ A;  3ZOQ B;  4ZYH A;  1EH7 A;  2NA2 A;  3VYY A;  2EN6 A;  2EM0 A;  2JWO A;  1WHN A;  2ODR C;  4DV3 E;  4GEQ B;  2EPX A;  3J81 C;  2EWL A;  4JYA E;  4X65 E;  2EM3 A;  2L2N A;  4X64 E;  2YTD A;  2VQE E;  2EPO A;  4R03 A;  3VHT B;  2EM8 A;  5KL7 A;  2F8B A;  4DV5 E;  1UBD C;  4L8N A;  4R2D A;  4HTG A;  2EN3 A;  2LTS A;  2EN1 A;  2V85 A;  1I94 E;  3EQ1 A;  4M30 A;  1YFH A;  1FJG E;  2EPU A;  2N8X A;  3RMP A;  3JAM C;  2KHX A;  2CSH A;  2EMY A;  2JPA A;  2LCE A;  3KWR A;  1WJP A;  3VK6 A;  2ENA A;  1IQS A;  2LV2 A;  1DI2 A;  2EMW A;  4GZN C;  3HPZ A;  2EN4 A;  4BC7 A;  2YPN A;  1T4O A;  3ADI A;  4JI5 E;  1IBM E;  4X66 E;  4R2E A;  2DRP A;  1N3G A;  2L3C A;  4B3R E;  4DR1 E;  4JI4 E;  1MGT A;  3P1X A;  2EOJ A;  2KOU A;  1RQ0 A;  2DMI A;  1UHZ A;  2EPM X;  2L6M A;  4P7D A;  2RS7 A;  1WXR A;  3ADJ A;  2L33 A;  1X5W A;  2K4V A;  5IT9 C;  2J7J A;  1AAY A;  2EZ6 A;  2FTX B;  1X49 A;  1X6E A;  5A6J A;  1A1L A;  4F6M A;  4HEI A;  2LE2 A;  2RSM A;  3BBG A;  2L92 A;  2B3T B;  1XNR E;  2ODR D;  2L8T A;  2DIX A;  4FK5 C;  5IV8 B;  1F2I G;  5AC5 A;  3KZY A;  2LUQ A;  2EPP A;  2EMA A;  2V89 A;  4O5G A;  2M7Q A;  4BHB A;  1EH6 A;  3OML A;  2MDG A;  2YTI A;  2EJ4 A;  1HNZ E;  3AV0 A;  2I9I A;  5KL6 A;  2HC5 A;  2LO3 A;  5CFF E;  4WSP A;  2FV4 B;  2HJJ A;  1XNQ E;  1GQE A;  1X6F A;  2E1M A;  1X6H A;  4OOG C;  4LFB E;  2RS6 A;  1A1J A;  2L2K B;  5AE3 A;  2UU9 E;  2EPK X;  2E72 A;  1A1I A;  4Q28 A;  1QNT A;  3C6K A;  3EPK A;  1T39 A;  4R2A A;  4ZYE A;  3F6H A;  3MHS C;  2RPC A;  2YRM A;  3L00 A;  2YSP A;  5KL5 A;  3HTX A;  3EPJ A;  4GKK E;  2DMY A;  2EP3 A;  2EPC A;  4BC9 A;  1XMO E;  4RH8 A;  1N34 E;  2L3J A;  2VRD A;  2G7H A;  2V8Q B;  4WX9 A;  4DV2 E;  2I13 A;  2RQL A;  2YSO A;  1HR0 E;  2EPA A;  2DSY A;  2JP9 A;  3JU0 A;  4DV0 E;  2UUC E;  3C4T A;  4MLV A;  4NZV A;  2UUB E;  4ZYD A;  2EOS A;  3FIG A;  2DB2 A;  1NCS A;  4LFC E;  5LLQ A;  2LBS B;  4TUI A;  2JVA A;  2JR1 A;  2FGG A;  2EMK A;  2NUE A;  4JI6 E;  2EE8 A;  2EOE A;  2EPR A;  1Z1B A;  2WBU A;  2D9H A;  1EH8 A;  4LF7 E;  2EQ0 A;  2YTG A;  1PKP A;  4DR5 E;  1XMQ E;  2R1F A;  4WXC A;  4L5N C;  5AE2 A;  4IJD A;  1PJT A;  2BBG A;  3ECR A;  5LL6 R;  2B7V A;  3JTZ A;  4F6N A;  4LFA E;  1UIL A;  5KL4 A;  2WBS A;  2YU8 A;  2EOI A;  2IHR 1;  1EKZ A;  3HQ1 A;  2EM5 A;  3LML A;  1RC7 A;  5DNY A;  5A69 A;  2CT1 A;  3IWB A;  4JI3 E;  2EMH A;  1IBL E;  1A1F A;  4O43 A;  4DV1 E;  1ZU1 A;  3DF6 A;  1N36 E;  2YTF A;  5IWA E;  1HNW E;  2B7T A;  4LF5 E;  1YPN A;  4I8O A;  1DQ3 A;  1SR9 A;  2N3H A;  2YRH A;  2EMF A;  4DR3 E;  2EMC A;  4X9J A;  4BBY A;  4LTY A;  4JI1 E;  1X48 A;  2DLK A;  2YWQ A;  4B3S E;  4BHC A;  5A6A A;  2JOB A;  1PDA A;  2H36 X;  3HPS A;  5IXM B;  3HXL A;  2LTR A;  5ADZ A;  2YTQ A;  1QU6 A;  2EOM A;  2LMZ A;  1JK1 A;  1PJQ A;  4DR6 E;  3MHH C;  4KHP E;  2YTP A;  5A2Q C;  2DGC A;  1J5E E;  4ZYG A;  1N32 E;  3H09 A;  2MC5 A;  2MKN A;  4Q35 B;  2GPI A;  2UXB E;  2Q8U A;  1P47 A;  4P78 A;  1T4L B;  1YYK A;  5BR8 E;  4DV4 E;  3IWC A;  4R2P A;  2CPN A;  4J8Z A;  3THO B;  4LU9 A;  4YHH E;  2EL6 A;  1KYQ A;  2ELY A;  2LT7 A;  2JY9 A;  4R2R A;  4WYQ B;  4WPY A;  2LRS A;  4X8W A;  3F6G A;  2A25 A;  5AAS A;  4NXN E;  4MLQ A;  4GKJ E;  5A6K A;  2UUA E;  3TQM A;  3EPL A;  4B3T E;  4DR2 E;  1DGC A;  4F9B B;  5KL3 A;  3BGH A;  4DV6 E;  2NAB A;  2MC6 A;  4BS9 A;  4R2Q A;  2GHF A;  3M99 B;  3T1Y E;  1GZ6 A;  1IBK E;  2LJH A;  4DMI A;  2EOR A;  2N3G A;  2YTO A;  1A1H A;  5FLX C;  3KZZ A;  2LVH A;  3C4B A;  4DUZ E;  2EM7 A;  4NXM E;  2EMB A;  1ZBT A;  4YY3 E;  2MKD A;  2ENC A;  4DV7 E;  1LLM C;  1NEI A;  2VQF E;  3BF2 A;  2EMG A;  2WCC 3;  4LF9 E;  1IMU A;  2GLI A;  1STU A;  3T1H E;  4RHB B;  2EOX A;  1BBG A;  3AUZ A;  4LF6 E;  4F9C B;  1WHQ A;  1G2F C;  1TF3 A;  1BBO A;  4NHR A;  5TSE A;  2YU5 A;  3LLH A;  2EOO A;  4AQY E;  1B69 A;  5T6J A;  4JI8 E;  5KL2 A;  4OX9 E;  4K0K E;  2JYA A;  3K6Q A;  1T38 A;  2MDR A;  1TN9 A;  1N33 E;  2EOH A;  2ENH A;  4O24 A;  4JI7 E;  2RSI A;  2VF1 A;  2EOY A;  3QG5 C;  2EM9 A;  2K7I A;  1YUI A;  4N4R B;  2ZM6 E;  2RTX A;  5A6B D;  4X62 E;  1L4S A;  2YTE A;  1SFE A;  2NUG A;  2EN2 A;  1GTK A;  2EQ3 A;  4KZS A;  2NUF A;  1X3C A;  1G2D C;  3J80 C;  2EL4 A;  3UK3 C;  2EMI A;  2LUP B;  1A1G A;  1YUJ A;  4DUY E;  3EPH A;  2R76 A;  1ZBQ A;  1KJK A;  1YZ9 A;  2EPL X;  1AH5 A;  2LJU A;  2YRK A;  2EQ1 A;  4R2S A;  2EPZ A;  2EMZ A;  1IQO A;  2EPN A;  3OTO E;  5LMU E;  1T4N A;  1X47 A;  2YTN A;  4R8O A;  2UXC E;  3ADL A;  2EML A;  4DR4 E;  1YSA C;  2YT4 A;  1TF6 A;  2VE7 C;  4BCA A;  2HGH A;  1J26 A;  2EMX A;  1FKA E;  5A6B A;  1BB8 A;  2B9D A;  4F9A B;  2ELZ A;  2EM2 A;  4LF8 E;  2UXD E;  1YYW A;  1RMD A;  2KON A;  1O0W A;  5AE1 A;  2YZT A;  1ZAA C;  2EM6 A;  1WRJ A; 
#chains in the Genus database with same CATH homology
 4HEI A;  2YWQ A;  1IMU A;  1L4S A;  1N3G A;  3TQM A;  2RQL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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