1N3GA

Solution structure of the ribosome-associated cold shock response protein yfia of escherichia coli
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
113
structure length
113
Chain Sequence
MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVKDANFVEEVEEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protein yfiA
publication title Solution structure of the ribosome-associated cold shock response protein Yfia of Escherichia col
pubmed doi rcsb
source organism Escherichia coli
molecule tags Translation
total genus 24
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02482 Ribosomal_S30AE Sigma 54 modulation protein / S30EA ribosomal protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.160.100 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain Ribosome hibernation promotion factor-like 1n3gA01
1N3GA 1L4SA 2YWQA 1IMUA 4HEIA 2RQLA 3TQMA
chains in the Genus database with same CATH superfamily
4DMIA 2JPAA 3F6GA 2EM6A 2WBSA 5AASA 4LTYA 1HR0E 2HC5A 2EM5A 2YPNA 2EOFA 4MLVA 1N32E 4F2JC 2LO3A 4JI1E 2E5LE 1WHQA 2LE2A 4LF5E 3H09A 2KOUA 3JAMC 2J7JA 3BIDA 4WSPA 4AQYE 4F6MA 2EL4A 2EPXA 4J8ZA 2V8QB 5KL3A 1Z1BA 2VQEE 2GLIA 2BBGA 2EMLA 5AE2A 2HJJA 1A1KA 4DR4E 5AC4A 1EH8A 1UBDC 2EPPA 2MKNA 4F9CB 1DQ3A 2CPNA 2EPMX 4DV6E 1TN9A 3VYXA 3DF6A 2L33A 2MDGA 2EPUA 4ZYDA 2EN6A 1X5WA 2L2MA 4L5NC 1GZ6A 1PJQA 2G7HA 4R2PA 4LFCE 1J5EE 2EOMA 2EM4A 4TUIA 3T1YE 1F2IG 1B69A 2VRDA 1AH5A 2A25A 3IWCA 4OOGC 1DGCA 4LF7E 5FLXC 2YU8A 4P7DA 1T4LB 2EPLX 3KZYA 4M0VA 4BCAA 2CT1A 4R2CA 1RMDA 1PJSA 4K0KE 2EM3A 1JK1A 4F9BB 2EOZA 3MHSC 2B7VA 2EQ3A 1QNTA 4M30A 4RHBB 4ZYHA 1STUA 3HPZA 3ADIA 5KL7A 3JTZA 3UK3C 3M99B 3THNA 4BHBA 1PDAA 2JY9A 4MLQA 2JOBA 2NABA 2EM9A 2GHFA 3IWBA 1EKZA 4BC9A 1IMUA 2EORA 5KL4A 3HPSA 2VQFE 2FTXB 1EH6A 2NUEA 5LL6R 3LMLA 2B3TB 2F8BA 2DRPA 2EOQA 4X66E 2DMIA 3JU0A 1HNZE 4DR1E 3J7AG 2FV4B 4NXNE 5IWAE 4DV3E 4N4RB 2UUAE 2YTEA 4M9VC 4GKKE 4BHCA 2V83A 2PRTA 1RQ0A 3DJWA 2V88A 4JI8E 2YTGA 2YRKA 2KONA 2EL6A 4JI5E 2RQLA 2EPZA 3ECRA 2EPAA 2I13A 2L8TA 2EM0A 2EOOA 1L4SA 2NA2A 4X64E 1TF6A 2LJHA 1P47A 1A1FA 2ENHA 2EMIA 2L2NA 2UXCE 1YFHA 3F6HA 4DV1E 2K7IA 2WZOA 4WFTA 1IBLE 2DGCA 4X9JA 1T4NA 2CSHA 2EOXA 2UU9E 3THOB 2EP3A 3L00A 3TQMA 4R03A 4BC7A 1FJGE 2RS7A 4NXME 4JV5E 3BGHA 5AE1A 1MGTA 2I9IA 2HGHA 4DR5E 2MDRA 1G2DC 2V86A 4YY3E 2EOYA 2N3HA 4Q28A 4O5GA 1WXRA 4DV2E 1MEYC 3ADJA 2M1SA 2L6MA 4HEIA 1XNQE 3EPKA 2EE8A 2M7QA 4NZVA 4R8OA 2EPOA 2BB8A 2DB2A 1UILA 2UXDE 4JI2E 4DR3E 1YPNA 5KL2A 4L8NA 4GZNC 2KHXA 2N8XA 5IT9C 1KJKA 3AV0A 4ZYEA 4DV0E 4O43A 3BF2A 4IS1C 2LCEA 1YSAC 2L92A 2M4IA 2EOSA 2D9HA 2YTDA 2R1FA 4JI7E 4I8OA 4KZSA 1X47A 2LVHA 2YSOA 3KZZA 5KL5A 1RC7A 2LTSA 1BBGA 5A6BA 3QG5C 2ENCA 2L3CA 3OTOE 1N34E 4B3TE 4WXDA 4LF6E 4M2ZA 2DMYA 2V87A 3FIGA 2B9DA 4IJDA 5AC5A 4X62E 2ADRA 2ODRC 2L2KB 1WHNA 1PJTA 1YYOA 1ZR9A 5LMNE 2NUGA 4FK5C 2EOIA 3C4TA 1O0WA 1X6HA 4RH8A 4ZYGA 5ADZA 4WXCA 4NHRA 2LBSB 1ZAAC 4LFAE 2DIXA 2JVAA 5F3WA 3K6QA 3C6MA 3HQ1A 5A2QC 3RMPA 3ADGA 3KWRA 3LLHA 2ELZA 1IBME 1NCSA 2EMHA 2H36X 3C6KA 1XMOE 4BBYA 3IWDA 2MC5A 1ZU1A 2EN1A 1YUJA 2YTJA 2EN4A 2EZ6A 2UUCE 4DR7E 3EPHA 1AAYA 4JI4E 2EJ4A 4B3ME 2YWQA 3EQ1A 2LJUA 4JI6E 1X6EA 1SR9A 1IQOA 1ZBTA 3MHHC 4O4KA 2EMCA 2B7TA 1X48A 2WBUA 3HTXA 2ENAA 1XMQE 2IHR1 5IXMB 4JYAE 4R2RA 3MSWA 2EMKA 1GQEA 5T6JA 4LF8E 5A6BD 2JWOA 5A69A 2LRSA 4B3SE 2EQ0A 2RSIA 1A1GA 1G2FC 3C4BA 1QU6A 2YRHA 4DUYE 3VK6A 2DSYA 2NUFA 1X3CA 3VYYA 3ADLA 2K4VA 2YTQA 1GTKA 1N33E 2V89A 2R76A 4KHPE 4LF9E 1YUIA 4WSGA 2EN3A 1N3GA 1NEIA 1BBOA 2YZTA 3VHTB 4B3RE 5IV8B 1BB8A 2EPNA 2UXBE 2YTOA 1HNWE 2EMAA 3AUZA 5AE3A 2JR1A 4KWYA 4LU9A 1EH7A 2RTXA 2EMZA 2M9AA 2RS6A 2MC6A 1XNRE 4F9AB 1IQSA 2UUBE 1WRJA 4WX9A 1UN6B 1A1JA 4OX9E 2EQ1A 1TF3A 1FKAE 4R2AA 5LLQA 4R2SA 1A1IA 2DLKA 1N36E 4P78A 2EMYA 4BS9A 4F54A 1SFEA 3OMLA 2YSPA 3P1XA 1IBKE 2V85A 1YYWA 2Q8UA 2WBTA 3J7Yp 2EL5A 4DR6E 4LFBE 2EMFA 2EPKX 4R2EA 1T39A 4O24A 1HNXE 5TSEA 4WYQB 4R2QA 4DV7E 2EM7A 4R2DA 5DNYA 5KL6A 1DI2A 2EOHA 3HXLA 1T4OA 2MKDA 2L3JA 2LMZA 1T38A 1YYKA 2EN2A 1X49A 1KYQA 5A6AA 2YU5A 4DV4E 2RSMA 3BBGA 4JI3E 2YTIA 2EM8A 2HHHE 2E1MA 3J80C 3J81C 4GEQB 4Q35B 2EOJA 2WCC3 2LUQA 2JOXA 5CFFE 5BR8E 4TUGA 4BMJA 2GPIA 2ELYA 1I94E 3EPJA 2ODRD 2EM2A 3EPLA 2LUPB 2YRMA 2EN8A 4JI0E 3ZOQB 2VF1A 1A1HA 2YTNA 1YZ9A 1J26A 1ZBQA 4LF4E 2ZM6E 4WPYA 2DLQA 1WJPA 2EMBA 2EMXA 4HTGA 2F4VE 2RPCA 1X6FA 2EMWA 4X65E 3T1HE 4DV5E 2CTDA 4DR2E 2EPCA 2JP9A 1JK2A 2EOEA 2JXPA 1UHZA 2VE7C 4DUZE 1LLMC 5A6JA 2EPRA 5LMUE 2LV2A 2EN7A 4DKKA 1PKPA 2YTFA 2N3GA 2FGGA 2JYAA 2LTRA 4F6NA 5A6KA 2LT7A 1A1LA 2E72A 4X8WA 4GKJE 2EWLA 2EMGA 2YT4A 4YHHE 2YTPA
chains in the Genus database with same CATH topology
1N3GA 1L4SA 2YWQA 1IMUA 4HEIA 2RQLA 3TQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N3G A;  1L4S A;  2YWQ A;  1IMU A;  4HEI A;  2RQL A;  3TQM A; 
#chains in the Genus database with same CATH topology
 4DMI A;  2JPA A;  3F6G A;  2EM6 A;  2WBS A;  5AAS A;  4LTY A;  1HR0 E;  2HC5 A;  2EM5 A;  2YPN A;  2EOF A;  4MLV A;  1N32 E;  4F2J C;  2LO3 A;  4JI1 E;  2E5L E;  1WHQ A;  2LE2 A;  4LF5 E;  3H09 A;  2KOU A;  3JAM C;  2J7J A;  3BID A;  4WSP A;  4AQY E;  4F6M A;  2EL4 A;  2EPX A;  4J8Z A;  2V8Q B;  5KL3 A;  1Z1B A;  2VQE E;  2GLI A;  2BBG A;  2EML A;  5AE2 A;  2HJJ A;  1A1K A;  4DR4 E;  5AC4 A;  1EH8 A;  1UBD C;  2EPP A;  2MKN A;  4F9C B;  1DQ3 A;  2CPN A;  2EPM X;  4DV6 E;  1TN9 A;  3VYX A;  3DF6 A;  2L33 A;  2MDG A;  2EPU A;  4ZYD A;  2EN6 A;  1X5W A;  2L2M A;  4L5N C;  1GZ6 A;  1PJQ A;  2G7H A;  4R2P A;  4LFC E;  1J5E E;  2EOM A;  2EM4 A;  4TUI A;  3T1Y E;  1F2I G;  1B69 A;  2VRD A;  1AH5 A;  2A25 A;  3IWC A;  4OOG C;  1DGC A;  4LF7 E;  5FLX C;  2YU8 A;  4P7D A;  1T4L B;  2EPL X;  3KZY A;  4M0V A;  4BCA A;  2CT1 A;  4R2C A;  1RMD A;  1PJS A;  4K0K E;  2EM3 A;  1JK1 A;  4F9B B;  2EOZ A;  3MHS C;  2B7V A;  2EQ3 A;  1QNT A;  4M30 A;  4RHB B;  4ZYH A;  1STU A;  3HPZ A;  3ADI A;  5KL7 A;  3JTZ A;  3UK3 C;  3M99 B;  3THN A;  4BHB A;  1PDA A;  2JY9 A;  4MLQ A;  2JOB A;  2NAB A;  2EM9 A;  2GHF A;  3IWB A;  1EKZ A;  4BC9 A;  1IMU A;  2EOR A;  5KL4 A;  3HPS A;  2VQF E;  2FTX B;  1EH6 A;  2NUE A;  5LL6 R;  3LML A;  2B3T B;  2F8B A;  2DRP A;  2EOQ A;  4X66 E;  2DMI A;  3JU0 A;  1HNZ E;  4DR1 E;  3J7A G;  2FV4 B;  4NXN E;  5IWA E;  4DV3 E;  4N4R B;  2UUA E;  2YTE A;  4M9V C;  4GKK E;  4BHC A;  2V83 A;  2PRT A;  1RQ0 A;  3DJW A;  2V88 A;  4JI8 E;  2YTG A;  2YRK A;  2KON A;  2EL6 A;  4JI5 E;  2RQL A;  2EPZ A;  3ECR A;  2EPA A;  2I13 A;  2L8T A;  2EM0 A;  2EOO A;  1L4S A;  2NA2 A;  4X64 E;  1TF6 A;  2LJH A;  1P47 A;  1A1F A;  2ENH A;  2EMI A;  2L2N A;  2UXC E;  1YFH A;  3F6H A;  4DV1 E;  2K7I A;  2WZO A;  4WFT A;  1IBL E;  2DGC A;  4X9J A;  1T4N A;  2CSH A;  2EOX A;  2UU9 E;  3THO B;  2EP3 A;  3L00 A;  3TQM A;  4R03 A;  4BC7 A;  1FJG E;  2RS7 A;  4NXM E;  4JV5 E;  3BGH A;  5AE1 A;  1MGT A;  2I9I A;  2HGH A;  4DR5 E;  2MDR A;  1G2D C;  2V86 A;  4YY3 E;  2EOY A;  2N3H A;  4Q28 A;  4O5G A;  1WXR A;  4DV2 E;  1MEY C;  3ADJ A;  2M1S A;  2L6M A;  4HEI A;  1XNQ E;  3EPK A;  2EE8 A;  2M7Q A;  4NZV A;  4R8O A;  2EPO A;  2BB8 A;  2DB2 A;  1UIL A;  2UXD E;  4JI2 E;  4DR3 E;  1YPN A;  5KL2 A;  4L8N A;  4GZN C;  2KHX A;  2N8X A;  5IT9 C;  1KJK A;  3AV0 A;  4ZYE A;  4DV0 E;  4O43 A;  3BF2 A;  4IS1 C;  2LCE A;  1YSA C;  2L92 A;  2M4I A;  2EOS A;  2D9H A;  2YTD A;  2R1F A;  4JI7 E;  4I8O A;  4KZS A;  1X47 A;  2LVH A;  2YSO A;  3KZZ A;  5KL5 A;  1RC7 A;  2LTS A;  1BBG A;  5A6B A;  3QG5 C;  2ENC A;  2L3C A;  3OTO E;  1N34 E;  4B3T E;  4WXD A;  4LF6 E;  4M2Z A;  2DMY A;  2V87 A;  3FIG A;  2B9D A;  4IJD A;  5AC5 A;  4X62 E;  2ADR A;  2ODR C;  2L2K B;  1WHN A;  1PJT A;  1YYO A;  1ZR9 A;  5LMN E;  2NUG A;  4FK5 C;  2EOI A;  3C4T A;  1O0W A;  1X6H A;  4RH8 A;  4ZYG A;  5ADZ A;  4WXC A;  4NHR A;  2LBS B;  1ZAA C;  4LFA E;  2DIX A;  2JVA A;  5F3W A;  3K6Q A;  3C6M A;  3HQ1 A;  5A2Q C;  3RMP A;  3ADG A;  3KWR A;  3LLH A;  2ELZ A;  1IBM E;  1NCS A;  2EMH A;  2H36 X;  3C6K A;  1XMO E;  4BBY A;  3IWD A;  2MC5 A;  1ZU1 A;  2EN1 A;  1YUJ A;  2YTJ A;  2EN4 A;  2EZ6 A;  2UUC E;  4DR7 E;  3EPH A;  1AAY A;  4JI4 E;  2EJ4 A;  4B3M E;  2YWQ A;  3EQ1 A;  2LJU A;  4JI6 E;  1X6E A;  1SR9 A;  1IQO A;  1ZBT A;  3MHH C;  4O4K A;  2EMC A;  2B7T A;  1X48 A;  2WBU A;  3HTX A;  2ENA A;  1XMQ E;  2IHR 1;  5IXM B;  4JYA E;  4R2R A;  3MSW A;  2EMK A;  1GQE A;  5T6J A;  4LF8 E;  5A6B D;  2JWO A;  5A69 A;  2LRS A;  4B3S E;  2EQ0 A;  2RSI A;  1A1G A;  1G2F C;  3C4B A;  1QU6 A;  2YRH A;  4DUY E;  3VK6 A;  2DSY A;  2NUF A;  1X3C A;  3VYY A;  3ADL A;  2K4V A;  2YTQ A;  1GTK A;  1N33 E;  2V89 A;  2R76 A;  4KHP E;  4LF9 E;  1YUI A;  4WSG A;  2EN3 A;  1N3G A;  1NEI A;  1BBO A;  2YZT A;  3VHT B;  4B3R E;  5IV8 B;  1BB8 A;  2EPN A;  2UXB E;  2YTO A;  1HNW E;  2EMA A;  3AUZ A;  5AE3 A;  2JR1 A;  4KWY A;  4LU9 A;  1EH7 A;  2RTX A;  2EMZ A;  2M9A A;  2RS6 A;  2MC6 A;  1XNR E;  4F9A B;  1IQS A;  2UUB E;  1WRJ A;  4WX9 A;  1UN6 B;  1A1J A;  4OX9 E;  2EQ1 A;  1TF3 A;  1FKA E;  4R2A A;  5LLQ A;  4R2S A;  1A1I A;  2DLK A;  1N36 E;  4P78 A;  2EMY A;  4BS9 A;  4F54 A;  1SFE A;  3OML A;  2YSP A;  3P1X A;  1IBK E;  2V85 A;  1YYW A;  2Q8U A;  2WBT A;  3J7Y p;  2EL5 A;  4DR6 E;  4LFB E;  2EMF A;  2EPK X;  4R2E A;  1T39 A;  4O24 A;  1HNX E;  5TSE A;  4WYQ B;  4R2Q A;  4DV7 E;  2EM7 A;  4R2D A;  5DNY A;  5KL6 A;  1DI2 A;  2EOH A;  3HXL A;  1T4O A;  2MKD A;  2L3J A;  2LMZ A;  1T38 A;  1YYK A;  2EN2 A;  1X49 A;  1KYQ A;  5A6A A;  2YU5 A;  4DV4 E;  2RSM A;  3BBG A;  4JI3 E;  2YTI A;  2EM8 A;  2HHH E;  2E1M A;  3J80 C;  3J81 C;  4GEQ B;  4Q35 B;  2EOJ A;  2WCC 3;  2LUQ A;  2JOX A;  5CFF E;  5BR8 E;  4TUG A;  4BMJ A;  2GPI A;  2ELY A;  1I94 E;  3EPJ A;  2ODR D;  2EM2 A;  3EPL A;  2LUP B;  2YRM A;  2EN8 A;  4JI0 E;  3ZOQ B;  2VF1 A;  1A1H A;  2YTN A;  1YZ9 A;  1J26 A;  1ZBQ A;  4LF4 E;  2ZM6 E;  4WPY A;  2DLQ A;  1WJP A;  2EMB A;  2EMX A;  4HTG A;  2F4V E;  2RPC A;  1X6F A;  2EMW A;  4X65 E;  3T1H E;  4DV5 E;  2CTD A;  4DR2 E;  2EPC A;  2JP9 A;  1JK2 A;  2EOE A;  2JXP A;  1UHZ A;  2VE7 C;  4DUZ E;  1LLM C;  5A6J A;  2EPR A;  5LMU E;  2LV2 A;  2EN7 A;  4DKK A;  1PKP A;  2YTF A;  2N3G A;  2FGG A;  2JYA A;  2LTR A;  4F6N A;  5A6K A;  2LT7 A;  1A1L A;  2E72 A;  4X8W A;  4GKJ E;  2EWL A;  2EMG A;  2YT4 A;  4YHH E;  2YTP A; 
#chains in the Genus database with same CATH homology
 1N3G A;  1L4S A;  2YWQ A;  1IMU A;  4HEI A;  2RQL A;  3TQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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