1N45A

X-ray crystal structure of human heme oxygenase-1 (ho-1) in complex with its substrate heme
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
214
structure length
214
Chain Sequence
PQDLSEALKEATKEVHTQAENAEFMRNFQKGQVTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSGEGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELLTH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords heme oxygenase 1
publication title Comparison of the heme-free and -bound crystal structures of human heme oxygenase-1.
pubmed doi rcsb
source organism Homo sapiens
total genus 82
structure length 214
sequence length 214
chains with identical sequence B
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2002-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1n45A00
2RD3A 4GPFA 1ULXA 1WZGA 3HLXA 2A2OA 4FN6A 3I9TA 2E7EA 1WNWA 2A6BA 5BTQA 1OZEA 3NO6A 1XK3A 1YAFA 1WOWA 4WD4A 1S8CA 1J77A 4G99A 4NY7A 1IX3A 4G7TA 1XK1A 2Q32A 3K4FA 1OZWA 1T5PA 1Z72A 1P3TA 1IRMA 3OQLA 1TYHA 4GOHA 1S13A 1XK2A 1VGIA 1N45A 4G8WA 3BJDA 1TWNA 3HMLA 1J2CA 2ZVUA 3B5PA 1DVEA 1TWRA 1P3UA 1YAKA 4WWJA 3IBXA 1UDDA 3HOKA 1P3VA 3DDEA 3HNHA 3RM5A 1IVJA 1OYLA 1OTVA 2RGZA 4G8UA 4WWZA 4MECA 1OZRA 2Q4XA 4G7PA 4G7LA 4G8PA 1IW0A 1OTWA 4G98A 3I9UA 1RTWA 1IW1A 4GPHA 4GPCA 1IX4A 2QCXA 1NI6A 1SK7A 3MOOA 1WE1A 1WOVA 2GM8A 1XK0A 1TO9A 4WX0A 3TGMA 1V8XA 1DVGA 1WZFA 2F2GA 2Z68A 1RCWA 1WWMA 1J02A 3CZYA 2A2MA 2GM7A 1N3UA 4LQXA 1OYKA 1XJZA 2QZCA 1WNVA 1OZLA 1WNXA 4RAJA 3MVUA 4G7UA 1UBBA 3I8RA 3B5OA 1WZDA 1WOXA 2QPPA 1TO9B 4WMHA 2DY5A
chains in the Genus database with same CATH superfamily
2RD3A 4GPFA 1ULXA 1WZGA 3HLXA 2A2OA 4FN6A 3I9TA 2E7EA 1WNWA 2A6BA 5BTQA 1OZEA 3NO6A 1XK3A 1YAFA 1WOWA 4WD4A 1S8CA 1J77A 4G99A 4NY7A 1IX3A 4G7TA 1XK1A 2Q32A 3K4FA 1OZWA 1T5PA 1Z72A 1P3TA 1IRMA 3OQLA 1TYHA 4GOHA 1S13A 1XK2A 1VGIA 1N45A 4G8WA 3BJDA 1TWNA 3HMLA 1J2CA 2ZVUA 3B5PA 1DVEA 1TWRA 1P3UA 1YAKA 4WWJA 3IBXA 1UDDA 3HOKA 1P3VA 3DDEA 3HNHA 3RM5A 1IVJA 1OYLA 1OTVA 2RGZA 4G8UA 4WWZA 4MECA 1OZRA 2Q4XA 4G7PA 4G7LA 4G8PA 1IW0A 1OTWA 4G98A 3I9UA 1RTWA 1IW1A 4GPHA 4GPCA 1IX4A 2QCXA 1NI6A 1SK7A 3MOOA 1WE1A 1WOVA 2GM8A 1XK0A 1TO9A 4WX0A 3TGMA 1V8XA 1DVGA 1WZFA 2Z68A 2F2GA 1RCWA 2LCUA 1WWMA 1J02A 3CZYA 2A2MA 2GM7A 1N3UA 4LQXA 1OYKA 1XJZA 2QZCA 1WNVA 1OZLA 1WNXA 4RAJA 3MVUA 4G7UA 1UBBA 3I8RA 3B5OA 1WZDA 1WOXA 2QPPA 1TO9B 4WMHA 2DY5A
chains in the Genus database with same CATH topology
2RD3A 4GPFA 1ULXA 1WZGA 3HLXA 2A2OA 4FN6A 3I9TA 2E7EA 1WNWA 2A6BA 5BTQA 1OZEA 3NO6A 1XK3A 1YAFA 1WOWA 4WD4A 1S8CA 1J77A 4G99A 4NY7A 1IX3A 4G7TA 1XK1A 2Q32A 3K4FA 1OZWA 1T5PA 1Z72A 1P3TA 1IRMA 3OQLA 1TYHA 4GOHA 1S13A 1XK2A 1VGIA 1N45A 4G8WA 3BJDA 1TWNA 3HMLA 1J2CA 2ZVUA 3B5PA 1DVEA 1TWRA 1P3UA 1YAKA 4WWJA 3IBXA 1UDDA 3HOKA 1P3VA 3DDEA 3HNHA 3RM5A 1IVJA 1OYLA 1OTVA 2RGZA 4G8UA 4WWZA 4MECA 1OZRA 2Q4XA 4G7PA 4G7LA 4G8PA 1IW0A 1OTWA 4G98A 3I9UA 1RTWA 1IW1A 4GPHA 4GPCA 1IX4A 2QCXA 1NI6A 1SK7A 3MOOA 1WE1A 1WOVA 2GM8A 1XK0A 1TO9A 4WX0A 3TGMA 1V8XA 1DVGA 1WZFA 2F2GA 2Z68A 1RCWA 1WWMA 1J02A 3CZYA 2A2MA 2GM7A 1N3UA 4LQXA 1OYKA 1XJZA 2QZCA 1WNVA 1OZLA 1WNXA 4RAJA 3MVUA 4G7UA 1UBBA 3I8RA 3B5OA 1WZDA 1WOXA 2QPPA 1TO9B 4WMHA 2DY5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RD3 A;  4GPF A;  1ULX A;  1WZG A;  3HLX A;  2A2O A;  4FN6 A;  3I9T A;  2E7E A;  1WNW A;  2A6B A;  5BTQ A;  1OZE A;  3NO6 A;  1XK3 A;  1YAF A;  1WOW A;  4WD4 A;  1S8C A;  1J77 A;  4G99 A;  4NY7 A;  1IX3 A;  4G7T A;  1XK1 A;  2Q32 A;  3K4F A;  1OZW A;  1T5P A;  1Z72 A;  1P3T A;  1IRM A;  3OQL A;  1TYH A;  4GOH A;  1S13 A;  1XK2 A;  1VGI A;  1N45 A;  4G8W A;  3BJD A;  1TWN A;  3HML A;  1J2C A;  2ZVU A;  3B5P A;  1DVE A;  1TWR A;  1P3U A;  1YAK A;  4WWJ A;  3IBX A;  1UDD A;  3HOK A;  1P3V A;  3DDE A;  3HNH A;  3RM5 A;  1IVJ A;  1OYL A;  1OTV A;  2RGZ A;  4G8U A;  4WWZ A;  4MEC A;  1OZR A;  2Q4X A;  4G7P A;  4G7L A;  4G8P A;  1IW0 A;  1OTW A;  4G98 A;  3I9U A;  1RTW A;  1IW1 A;  4GPH A;  4GPC A;  1IX4 A;  2QCX A;  1NI6 A;  1SK7 A;  3MOO A;  1WE1 A;  1WOV A;  2GM8 A;  1XK0 A;  1TO9 A;  4WX0 A;  3TGM A;  1V8X A;  1DVG A;  1WZF A;  2F2G A;  2Z68 A;  1RCW A;  1WWM A;  1J02 A;  3CZY A;  2A2M A;  2GM7 A;  1N3U A;  4LQX A;  1OYK A;  1XJZ A;  2QZC A;  1WNV A;  1OZL A;  1WNX A;  4RAJ A;  3MVU A;  4G7U A;  1UBB A;  3I8R A;  3B5O A;  1WZD A;  1WOX A;  2QPP A;  1TO9 B;  4WMH A;  2DY5 A; 
#chains in the Genus database with same CATH topology
 2RD3 A;  4GPF A;  1ULX A;  1WZG A;  3HLX A;  2A2O A;  4FN6 A;  3I9T A;  2E7E A;  1WNW A;  2A6B A;  5BTQ A;  1OZE A;  3NO6 A;  1XK3 A;  1YAF A;  1WOW A;  4WD4 A;  1S8C A;  1J77 A;  4G99 A;  4NY7 A;  1IX3 A;  4G7T A;  1XK1 A;  2Q32 A;  3K4F A;  1OZW A;  1T5P A;  1Z72 A;  1P3T A;  1IRM A;  3OQL A;  1TYH A;  4GOH A;  1S13 A;  1XK2 A;  1VGI A;  1N45 A;  4G8W A;  3BJD A;  1TWN A;  3HML A;  1J2C A;  2ZVU A;  3B5P A;  1DVE A;  1TWR A;  1P3U A;  1YAK A;  4WWJ A;  3IBX A;  1UDD A;  3HOK A;  1P3V A;  3DDE A;  3HNH A;  3RM5 A;  1IVJ A;  1OYL A;  1OTV A;  2RGZ A;  4G8U A;  4WWZ A;  4MEC A;  1OZR A;  2Q4X A;  4G7P A;  4G7L A;  4G8P A;  1IW0 A;  1OTW A;  4G98 A;  3I9U A;  1RTW A;  1IW1 A;  4GPH A;  4GPC A;  1IX4 A;  2QCX A;  1NI6 A;  1SK7 A;  3MOO A;  1WE1 A;  1WOV A;  2GM8 A;  1XK0 A;  1TO9 A;  4WX0 A;  3TGM A;  1V8X A;  1DVG A;  1WZF A;  2Z68 A;  2F2G A;  1RCW A;  2LCU A;  1WWM A;  1J02 A;  3CZY A;  2A2M A;  2GM7 A;  1N3U A;  4LQX A;  1OYK A;  1XJZ A;  2QZC A;  1WNV A;  1OZL A;  1WNX A;  4RAJ A;  3MVU A;  4G7U A;  1UBB A;  3I8R A;  3B5O A;  1WZD A;  1WOX A;  2QPP A;  1TO9 B;  4WMH A;  2DY5 A; 
#chains in the Genus database with same CATH homology
 2RD3 A;  4GPF A;  1ULX A;  1WZG A;  3HLX A;  2A2O A;  4FN6 A;  3I9T A;  2E7E A;  1WNW A;  2A6B A;  5BTQ A;  1OZE A;  3NO6 A;  1XK3 A;  1YAF A;  1WOW A;  4WD4 A;  1S8C A;  1J77 A;  4G99 A;  4NY7 A;  1IX3 A;  4G7T A;  1XK1 A;  2Q32 A;  3K4F A;  1OZW A;  1T5P A;  1Z72 A;  1P3T A;  1IRM A;  3OQL A;  1TYH A;  4GOH A;  1S13 A;  1XK2 A;  1VGI A;  1N45 A;  4G8W A;  3BJD A;  1TWN A;  3HML A;  1J2C A;  2ZVU A;  3B5P A;  1DVE A;  1TWR A;  1P3U A;  1YAK A;  4WWJ A;  3IBX A;  1UDD A;  3HOK A;  1P3V A;  3DDE A;  3HNH A;  3RM5 A;  1IVJ A;  1OYL A;  1OTV A;  2RGZ A;  4G8U A;  4WWZ A;  4MEC A;  1OZR A;  2Q4X A;  4G7P A;  4G7L A;  4G8P A;  1IW0 A;  1OTW A;  4G98 A;  3I9U A;  1RTW A;  1IW1 A;  4GPH A;  4GPC A;  1IX4 A;  2QCX A;  1NI6 A;  1SK7 A;  3MOO A;  1WE1 A;  1WOV A;  2GM8 A;  1XK0 A;  1TO9 A;  4WX0 A;  3TGM A;  1V8X A;  1DVG A;  1WZF A;  2F2G A;  2Z68 A;  1RCW A;  1WWM A;  1J02 A;  3CZY A;  2A2M A;  2GM7 A;  1N3U A;  4LQX A;  1OYK A;  1XJZ A;  2QZC A;  1WNV A;  1OZL A;  1WNX A;  4RAJ A;  3MVU A;  4G7U A;  1UBB A;  3I8R A;  3B5O A;  1WZD A;  1WOX A;  2QPP A;  1TO9 B;  4WMH A;  2DY5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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