1N63B

Crystal structure of the cu,mo-co dehydrogenase (codh); carbon monoxide reduced state
Total Genus 277
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
277
sequence length
805
structure length
805
Chain Sequence
b'TTVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carbon monoxide dehydrogenase small chain
publication title Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 277
structure length 805
sequence length 805
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2002-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1n63B01
1N62B 3SR6C 2W55B 3AN1A 3AMZA 1N60B 3NVWC 2W54B 1FIQC 1JROB 3AM9A 1N5XA 2W3RB 3EUB4 4C7ZA 1FFUB 1WYGA 3FC4A 1SIJA 3NVVC 3L4PA 1FFVB 1N61B 1N5WB 1V97A 1VLBA 3NVYC 4US8A 2W3SB 2E3TA 4C80A 3HRDA 1ZXIB 1DGJA 1RM6A 1VDVA 4C7YA 3NS1C 4ZOHA 1N63B 1SB3A 4US9A 3B9JC 3HRDB 1FO4A 3ETRC 3NRZC 3FAHA 1JRPB 3NVZC 4USAA
chains in the Genus database with same CATH superfamily
4XR5A 4EADA 3C2OA 1K8AJ 3WO0A 1QPRA 3PAJA 1X1OA 1N60B 2TPTA 2W54B 3BIIE 3L0GA 1JJ2H 3CCEH 1N5XA 2W3RB 2WK5A 4C7ZA 2B7NA 4GA6A 5HL7J 1KD1J 1Q7YJ 1QPOA 1VQ5H 3DLLJ 5MPOC 5JVGJ 3H5QA 3CCSH 5GAGN 3CCUH 1DGJA 3OW2H 3CCRH 1Q82J 1VQPH 2I14A 1FM0E 1SB3A 4US9A 2B7PA 5MLCO 4AP8A 2ZJRJ 1NJIJ 3NRZC 3FAHA 1YHQH 2JBMA 1JRPB 4YEKA 3I55H 1UOUA 2J0FA 1VQ9H 2Q5WE 1VQ6H 2B7QA 4IOAJ 1YTKA 2W55B 2OTJH 3AMZA 1W2BH 3C2RA 3PIOJ 5EY3A 5JVHJ 1FIQC 1JROB 4U67J 1FMAE 1YTEA 5HUOA 5DM7J 1SIJA 1YITH 5EP8A 3I56H 1K73J 3C2EA 1V97A 1N5WB 3CC4H 3CF5J 1NVJA 1VQ7H 4WCEJ 1N8RJ 1YJWH 3CCLH 2ZJQJ 1ZXIB 1S72H 1RM6A 4WFAJ 1QPNA 3CMAH 4C7YA 4I9AA 5HULA 3CCQH 1QVFH 5GADN 3CXCH 5H1SO 1FO4A 4KWWA 1QVGH 5AN9F 5AYXA 4IO9J 3NVZC 3GNNA 2ZJPJ 1VQMH 3C2VA 3CC7H 5DM6J 1YIJH 2QA4H 3AN1A 1QPQA 3WO1A 4YYYA 3NVWC 5AYYA 5AYZA 4EAFA 4UY8M 3AM9A 1YJ9H 3C2FA 1Y69K 1WYGA 1M1KJ 3CPWH 3CCVH 2OMDA 3L4PA 1K9MJ 5HUPA 4US8A 1VQOH 2W3SB 4C80A 2I1OA 1O4UA 3G4SH 1Q81J 1VQLH 1VDVA 3PIPJ 3NS1C 3CCMH 1Q86J 1YI2H 3B9JC 3HRDB 1M90J 3ETRC 4GA4A 5GAEN 3CC2H 2OTLH 4USAA 1N62B 3TQVA 1VQ4H 1VQ8H 3J7ZM 3CD6H 3G71H 3SR6C 1YTDA 1WKIA 2DSJA 4LHMA 4KWVA 1VQKH 1BRWA 4X46A 4IOCJ 3EUB4 1KQSH 1QAPA 3CCJH 4WFNJ 1FFUB 5GAHN 3FC4A 3NVVC 2WP4A 1VQNH 1FFVB 1NVIE 3WNZA 1N61B 3CMEH 4WF9J 1VLBA 1YJNH 3NVYC 1AZYA 2QEXH 1T3QB 2E3TA 2PA2A 2WK6A 4WFBJ 3HRDA 3RPFA 3G6EH 4ZOHA 1N63B 4GA5A 3VMMA 1KC8J 1OTPA 2QIEA
chains in the Genus database with same CATH topology
1N62B 3SR6C 2W55B 3AN1A 3AMZA 1N60B 3NVWC 2W54B 1FIQC 1JROB 3AM9A 1N5XA 2W3RB 3EUB4 4C7ZA 1FFUB 1WYGA 3FC4A 1SIJA 3NVVC 3L4PA 1FFVB 1N61B 1N5WB 1V97A 1VLBA 3NVYC 4US8A 2W3SB 2E3TA 4C80A 3HRDA 1ZXIB 1DGJA 1RM6A 1VDVA 4C7YA 3NS1C 4ZOHA 1N63B 1SB3A 4US9A 3B9JC 3HRDB 1FO4A 3ETRC 3NRZC 3FAHA 1JRPB 3NVZC 4USAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N62 B;  3SR6 C;  2W55 B;  3AN1 A;  3AMZ A;  1N60 B;  3NVW C;  2W54 B;  1FIQ C;  1JRO B;  3AM9 A;  1N5X A;  2W3R B;  3EUB 4;  4C7Z A;  1FFU B;  1WYG A;  3FC4 A;  1SIJ A;  3NVV C;  3L4P A;  1FFV B;  1N61 B;  1N5W B;  1V97 A;  1VLB A;  3NVY C;  4US8 A;  2W3S B;  2E3T A;  4C80 A;  3HRD A;  1ZXI B;  1DGJ A;  1RM6 A;  1VDV A;  4C7Y A;  3NS1 C;  4ZOH A;  1N63 B;  1SB3 A;  4US9 A;  3B9J C;  3HRD B;  1FO4 A;  3ETR C;  3NRZ C;  3FAH A;  1JRP B;  3NVZ C;  4USA A; 
#chains in the Genus database with same CATH topology
 4XR5 A;  4EAD A;  3C2O A;  1K8A J;  3WO0 A;  1QPR A;  3PAJ A;  1X1O A;  1N60 B;  2TPT A;  2W54 B;  3BII E;  3L0G A;  1JJ2 H;  3CCE H;  1N5X A;  2W3R B;  2WK5 A;  4C7Z A;  2B7N A;  4GA6 A;  5HL7 J;  1KD1 J;  1Q7Y J;  1QPO A;  1VQ5 H;  3DLL J;  5MPO C;  5JVG J;  3H5Q A;  3CCS H;  5GAG N;  3CCU H;  1DGJ A;  3OW2 H;  3CCR H;  1Q82 J;  1VQP H;  2I14 A;  1FM0 E;  1SB3 A;  4US9 A;  2B7P A;  5MLC O;  4AP8 A;  2ZJR J;  1NJI J;  3NRZ C;  3FAH A;  1YHQ H;  2JBM A;  1JRP B;  4YEK A;  3I55 H;  1UOU A;  2J0F A;  1VQ9 H;  2Q5W E;  1VQ6 H;  2B7Q A;  4IOA J;  1YTK A;  2W55 B;  2OTJ H;  3AMZ A;  1W2B H;  3C2R A;  3PIO J;  5EY3 A;  5JVH J;  1FIQ C;  1JRO B;  4U67 J;  1FMA E;  1YTE A;  5HUO A;  5DM7 J;  1SIJ A;  1YIT H;  5EP8 A;  3I56 H;  1K73 J;  3C2E A;  1V97 A;  1N5W B;  3CC4 H;  3CF5 J;  1NVJ A;  1VQ7 H;  4WCE J;  1N8R J;  1YJW H;  3CCL H;  2ZJQ J;  1ZXI B;  1S72 H;  1RM6 A;  4WFA J;  1QPN A;  3CMA H;  4C7Y A;  4I9A A;  5HUL A;  3CCQ H;  1QVF H;  5GAD N;  3CXC H;  5H1S O;  1FO4 A;  4KWW A;  1QVG H;  5AN9 F;  5AYX A;  4IO9 J;  3NVZ C;  3GNN A;  2ZJP J;  1VQM H;  3C2V A;  3CC7 H;  5DM6 J;  1YIJ H;  2QA4 H;  3AN1 A;  1QPQ A;  3WO1 A;  4YYY A;  3NVW C;  5AYY A;  5AYZ A;  4EAF A;  4UY8 M;  3AM9 A;  1YJ9 H;  3C2F A;  1Y69 K;  1WYG A;  1M1K J;  3CPW H;  3CCV H;  2OMD A;  3L4P A;  1K9M J;  5HUP A;  4US8 A;  1VQO H;  2W3S B;  4C80 A;  2I1O A;  1O4U A;  3G4S H;  1Q81 J;  1VQL H;  1VDV A;  3PIP J;  3NS1 C;  3CCM H;  1Q86 J;  1YI2 H;  3B9J C;  3HRD B;  1M90 J;  3ETR C;  4GA4 A;  5GAE N;  3CC2 H;  2OTL H;  4USA A;  1N62 B;  3TQV A;  1VQ4 H;  1VQ8 H;  3J7Z M;  3CD6 H;  3G71 H;  3SR6 C;  1YTD A;  1WKI A;  2DSJ A;  4LHM A;  4KWV A;  1VQK H;  1BRW A;  4X46 A;  4IOC J;  3EUB 4;  1KQS H;  1QAP A;  3CCJ H;  4WFN J;  1FFU B;  5GAH N;  3FC4 A;  3NVV C;  2WP4 A;  1VQN H;  1FFV B;  1NVI E;  3WNZ A;  1N61 B;  3CME H;  4WF9 J;  1VLB A;  1YJN H;  3NVY C;  1AZY A;  2QEX H;  1T3Q B;  2E3T A;  2PA2 A;  2WK6 A;  4WFB J;  3HRD A;  3RPF A;  3G6E H;  4ZOH A;  1N63 B;  4GA5 A;  3VMM A;  1KC8 J;  1OTP A;  2QIE A; 
#chains in the Genus database with same CATH homology
 1N62 B;  3SR6 C;  2W55 B;  3AN1 A;  3AMZ A;  1N60 B;  3NVW C;  2W54 B;  1FIQ C;  1JRO B;  3AM9 A;  1N5X A;  2W3R B;  3EUB 4;  4C7Z A;  1FFU B;  1WYG A;  3FC4 A;  1SIJ A;  3NVV C;  3L4P A;  1FFV B;  1N61 B;  1N5W B;  1V97 A;  1VLB A;  3NVY C;  4US8 A;  2W3S B;  2E3T A;  4C80 A;  3HRD A;  1ZXI B;  1DGJ A;  1RM6 A;  1VDV A;  4C7Y A;  3NS1 C;  4ZOH A;  1N63 B;  1SB3 A;  4US9 A;  3B9J C;  3HRD B;  1FO4 A;  3ETR C;  3NRZ C;  3FAH A;  1JRP B;  3NVZ C;  4USA A; 
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