1N63B

Crystal structure of the cu,mo-co dehydrogenase (codh); carbon monoxide reduced state
Total Genus 277
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
277
sequence length
805
structure length
805
Chain Sequence
TTVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Carbon monoxide dehydrogenase small chain
publication title Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
pubmed doi rcsb
total genus 277
structure length 805
sequence length 805
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2002-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n63B04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1n63B01
3NS1C 1N5XA 3HRDA 1ZXIB 1N63B 1DGJA 1JRPB 1FO4A 1FFUB 1SIJA 1FIQC 3ETRC 3NVZC 3AN1A 1SB3A 2E3TA 3EUB4 3HRDB 1N5WB 3NRZC 3NVWC 3AMZA 3NVVC 1RM6A 1N62B 4USAA 1N61B 4ZOHA 2W3SB 2W3RB 3SR6C 4C7ZA 3L4PA 1JROB 2W54B 4US9A 4C7YA 3AM9A 2W55B 1FFVB 1VDVA 1N60B 3B9JC 1V97A 1WYGA 3FAHA 3NVYC 4C80A 4US8A 1VLBA 3FC4A
chains in the Genus database with same CATH superfamily
4GA5A 4YYYA 5MLCO 4XR5A 1FO4A 1FFUB 4IOAJ 1O4UA 3C2VA 3C2RA 4WFBJ 4IOCJ 3DLLJ 5JVHJ 3CF5J 2I14A 3AN1A 2QEXH 3I55H 1VQOH 1N5WB 5AYYA 3NRZC 1QPNA 3NVWC 2B7NA 3WO0A 3TQVA 3CCMH 5GAHN 3CXCH 1Y69K 4X46A 1VQ4H 3AMZA 2Q5WE 4UY8M 1RM6A 5H1SO 1KQSH 1N62B 2WP4A 4IO9J 3CC7H 1M90J 5AYZA 3L4PA 1UOUA 3CMAH 4US9A 3CCJH 3AM9A 1FFVB 1VDVA 1OTPA 1S72H 2B7QA 5AN9F 3FAHA 1VQPH 1VLBA 3CCVH 3CPWH 5EY3A 3HRDA 1YTEA 1ZXIB 4GA4A 3OW2H 4KWVA 1VQNH 1QVFH 1Q86J 1FM0E 3C2OA 5GAGN 1YJ9H 3CC2H 3ETRC 4WFNJ 1VQ8H 3PIPJ 2E3TA 1VQ5H 2JBMA 3C2FA 4EAFA 1YIJH 1K9MJ 2ZJRJ 2ZJQJ 4WF9J 3PIOJ 5AYXA 4USAA 4ZOHA 5DM6J 2W3SB 4U67J 1WKIA 2WK5A 2W3RB 5JVGJ 1N8RJ 1VQKH 2ZJPJ 4I9AA 4GA6A 5GAEN 1YTKA 2I1OA 1QAPA 2TPTA 2WK6A 1QVGH 3NS1C 1Q81J 3I56H 1FMAE 3PAJA 1N63B 2DSJA 1JRPB 1YTDA 5EP8A 4YEKA 1SIJA 1AZYA 3WO1A 4WCEJ 3CCRH 3EUB4 4EADA 4LHMA 1QPOA 3C2EA 3VMMA 3GNNA 1X1OA 3CC4H 1VQMH 1M1KJ 2QIEA 3WNZA 1KD1J 1NJIJ 3CCEH 3G6EH 3J7ZM 2OTJH 1T3QB 3SR6C 4C7ZA 2W54B 4C7YA 1QPQA 3CD6H 3B9JC 1V97A 1Q82J 2OTLH 5HULA 4C80A 5GADN 1YITH 5HL7J 1VQLH 1QPRA 1YI2H 3CMEH 1N5XA 3L0GA 5HUPA 3G4SH 1DGJA 1VQ6H 3CCQH 3H5QA 2J0FA 3CCUH 1VQ7H 5DM7J 1FIQC 1JJ2H 2OMDA 3NVZC 4WFAJ 1SB3A 3HRDB 1YJNH 1NVIE 5MPOC 3RPFA 1KC8J 2PA2A 1YHQH 1W2BH 1K73J 1K8AJ 3BIIE 3NVVC 1Q7YJ 2B7PA 1BRWA 3G71H 1N61B 4AP8A 1JROB 2QA4H 5HUOA 3CCLH 2W55B 1N60B 1VQ9H 3CCSH 1WYGA 3NVYC 4US8A 4KWWA 1YJWH 1NVJA 3FC4A
chains in the Genus database with same CATH topology
3NS1C 1N5XA 3HRDA 1ZXIB 1N63B 1DGJA 1JRPB 1FO4A 1FFUB 1SIJA 1FIQC 3ETRC 3NVZC 3AN1A 1SB3A 2E3TA 3EUB4 3HRDB 1N5WB 3NRZC 3NVWC 3AMZA 3NVVC 1RM6A 1N62B 4USAA 1N61B 4ZOHA 2W3SB 2W3RB 3SR6C 4C7ZA 3L4PA 1JROB 2W54B 4US9A 4C7YA 3AM9A 2W55B 1FFVB 1VDVA 1N60B 3B9JC 1V97A 1WYGA 3FAHA 3NVYC 4C80A 4US8A 1VLBA 3FC4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NS1 C;  1N5X A;  3HRD A;  1ZXI B;  1N63 B;  1DGJ A;  1JRP B;  1FO4 A;  1FFU B;  1SIJ A;  1FIQ C;  3ETR C;  3NVZ C;  3AN1 A;  1SB3 A;  2E3T A;  3EUB 4;  3HRD B;  1N5W B;  3NRZ C;  3NVW C;  3AMZ A;  3NVV C;  1RM6 A;  1N62 B;  4USA A;  1N61 B;  4ZOH A;  2W3S B;  2W3R B;  3SR6 C;  4C7Z A;  3L4P A;  1JRO B;  2W54 B;  4US9 A;  4C7Y A;  3AM9 A;  2W55 B;  1FFV B;  1VDV A;  1N60 B;  3B9J C;  1V97 A;  1WYG A;  3FAH A;  3NVY C;  4C80 A;  4US8 A;  1VLB A;  3FC4 A; 
#chains in the Genus database with same CATH topology
 4GA5 A;  4YYY A;  5MLC O;  4XR5 A;  1FO4 A;  1FFU B;  4IOA J;  1O4U A;  3C2V A;  3C2R A;  4WFB J;  4IOC J;  3DLL J;  5JVH J;  3CF5 J;  2I14 A;  3AN1 A;  2QEX H;  3I55 H;  1VQO H;  1N5W B;  5AYY A;  3NRZ C;  1QPN A;  3NVW C;  2B7N A;  3WO0 A;  3TQV A;  3CCM H;  5GAH N;  3CXC H;  1Y69 K;  4X46 A;  1VQ4 H;  3AMZ A;  2Q5W E;  4UY8 M;  1RM6 A;  5H1S O;  1KQS H;  1N62 B;  2WP4 A;  4IO9 J;  3CC7 H;  1M90 J;  5AYZ A;  3L4P A;  1UOU A;  3CMA H;  4US9 A;  3CCJ H;  3AM9 A;  1FFV B;  1VDV A;  1OTP A;  1S72 H;  2B7Q A;  5AN9 F;  3FAH A;  1VQP H;  1VLB A;  3CCV H;  3CPW H;  5EY3 A;  3HRD A;  1YTE A;  1ZXI B;  4GA4 A;  3OW2 H;  4KWV A;  1VQN H;  1QVF H;  1Q86 J;  1FM0 E;  3C2O A;  5GAG N;  1YJ9 H;  3CC2 H;  3ETR C;  4WFN J;  1VQ8 H;  3PIP J;  2E3T A;  1VQ5 H;  2JBM A;  3C2F A;  4EAF A;  1YIJ H;  1K9M J;  2ZJR J;  2ZJQ J;  4WF9 J;  3PIO J;  5AYX A;  4USA A;  4ZOH A;  5DM6 J;  2W3S B;  4U67 J;  1WKI A;  2WK5 A;  2W3R B;  5JVG J;  1N8R J;  1VQK H;  2ZJP J;  4I9A A;  4GA6 A;  5GAE N;  1YTK A;  2I1O A;  1QAP A;  2TPT A;  2WK6 A;  1QVG H;  3NS1 C;  1Q81 J;  3I56 H;  1FMA E;  3PAJ A;  1N63 B;  2DSJ A;  1JRP B;  1YTD A;  5EP8 A;  4YEK A;  1SIJ A;  1AZY A;  3WO1 A;  4WCE J;  3CCR H;  3EUB 4;  4EAD A;  4LHM A;  1QPO A;  3C2E A;  3VMM A;  3GNN A;  1X1O A;  3CC4 H;  1VQM H;  1M1K J;  2QIE A;  3WNZ A;  1KD1 J;  1NJI J;  3CCE H;  3G6E H;  3J7Z M;  2OTJ H;  1T3Q B;  3SR6 C;  4C7Z A;  2W54 B;  4C7Y A;  1QPQ A;  3CD6 H;  3B9J C;  1V97 A;  1Q82 J;  2OTL H;  5HUL A;  4C80 A;  5GAD N;  1YIT H;  5HL7 J;  1VQL H;  1QPR A;  1YI2 H;  3CME H;  1N5X A;  3L0G A;  5HUP A;  3G4S H;  1DGJ A;  1VQ6 H;  3CCQ H;  3H5Q A;  2J0F A;  3CCU H;  1VQ7 H;  5DM7 J;  1FIQ C;  1JJ2 H;  2OMD A;  3NVZ C;  4WFA J;  1SB3 A;  3HRD B;  1YJN H;  1NVI E;  5MPO C;  3RPF A;  1KC8 J;  2PA2 A;  1YHQ H;  1W2B H;  1K73 J;  1K8A J;  3BII E;  3NVV C;  1Q7Y J;  2B7P A;  1BRW A;  3G71 H;  1N61 B;  4AP8 A;  1JRO B;  2QA4 H;  5HUO A;  3CCL H;  2W55 B;  1N60 B;  1VQ9 H;  3CCS H;  1WYG A;  3NVY C;  4US8 A;  4KWW A;  1YJW H;  1NVJ A;  3FC4 A; 
#chains in the Genus database with same CATH homology
 3NS1 C;  1N5X A;  3HRD A;  1ZXI B;  1N63 B;  1DGJ A;  1JRP B;  1FO4 A;  1FFU B;  1SIJ A;  1FIQ C;  3ETR C;  3NVZ C;  3AN1 A;  1SB3 A;  2E3T A;  3EUB 4;  3HRD B;  1N5W B;  3NRZ C;  3NVW C;  3AMZ A;  3NVV C;  1RM6 A;  1N62 B;  4USA A;  1N61 B;  4ZOH A;  2W3S B;  2W3R B;  3SR6 C;  4C7Z A;  3L4P A;  1JRO B;  2W54 B;  4US9 A;  4C7Y A;  3AM9 A;  2W55 B;  1FFV B;  1VDV A;  1N60 B;  3B9J C;  1V97 A;  1WYG A;  3FAH A;  3NVY C;  4C80 A;  4US8 A;  1VLB A;  3FC4 A; 
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