The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
118
|
sequence length |
555
|
structure length |
533
|
Chain Sequence |
ANFNVPKLGVFPVAAVFDIDNVPEDSSATGSRWLPSIYQGGNYWGGGPQALHAQVSNFDSSNRLPYNPRTENNPAGNCAFAFNPFGQYISNISSAQSVHRRIYGIDLNDEPLFSPNAASITNGGNPTMSQDTGYHNIGPINTAYKAEIFRPVNPLPMSDTAPDPETLEPGQTEPLIKSDGVYSNSGIASFIFDRPVTEPNPNWPPLPPPVIPIIYPTPALGIGAAAAYGFGYQVTVYRWEEIPVEFLNPEGSPCAYEAGIILVRQTSNPMNAVAGRLVPYVEDIAVDIFLTGKFFTLNPPLRITNNYFADDEVKENTVTIGNYTTTLSSAYYAVYKTDGYGGATCFIASGGAGISALVQLQDNSVLDVLYYSLPLSLGGSKAAIDEWVANNCGLFPMSGGLDKTTLLEIPRRQLEAINPQDGPGQYDLFILDDSGAYASFSSFIGYPEAAYYVAGAATFMDVENPDEIIFILRNGAGWYACEIGDALKIADDEFDSVDYFAYRGGVMFIGSARYTEGGDPLPIKYRAIIPGLP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| molecule keywords |
Adsorption protein P2
|
| publication title |
The Receptor Binding Protein P2 of PRD1, a
Virus Targeting Antibiotic-Resistant Bacteria,
Has a Novel Fold Suggesting Multiple Functions.
pubmed doi rcsb |
| source organism |
Enterobacteria phage prd1
|
| total genus |
118
|
| structure length |
533
|
| sequence length |
555
|
| ec nomenclature | |
| pdb deposition date | 2002-11-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09214 | Prd1-P2 | Bacteriophage Prd1, adsorption protein P2 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | receptor-binding protein prd1-p2, domain 2 | receptor-binding protein prd1-p2, domain 2 | ||
| Mainly Beta | Distorted Sandwich | receptor-binding protein prd1-p2, domain 3 | receptor-binding protein prd1-p2, domain 3 | ||
| Mainly Beta | 3 Propeller | Pseudo beta propeller | Pseudo beta propeller |
#chains in the Genus database with same CATH superfamily 1N7V A; 1N7U A; #chains in the Genus database with same CATH topology 1N7V A; 1N7U A; #chains in the Genus database with same CATH homology 1N7V A; 1N7U A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
