1NA6A

Crystal structure of restriction endonuclease ecorii mutant r88a
Total Genus 101
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
101
sequence length
395
structure length
365
Chain Sequence
SVFHNWLLEIACENYFVYIKRLSANDTGATQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWVCASTDEEDVIETAIGEVIPGALISGPAGQILGGLSLQQAPVNHKYILPEDWHLRFPSGSEIIQYAASHYDPDEQLLDRRRVEYDIFLLVEELHVLDIIRKGFGSVDEFIALANSVSNRRKSRAGKSLELHLEHLFIEHGLRHFATQAPDFLFPSAGAYHPLRMLAVKTTCKDRWRQILNHLFTLQEGVSLAQYREMRESGVRLVVPSSLHKKYPEAVRAELMTLGAFIAELTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold.
pubmed doi rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords Restriction endonuclease EcoRII
total genus 101
structure length 365
sequence length 395
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2002-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09019 EcoRII-C EcoRII C terminal
A PF09217 EcoRII-N Restriction endonuclease EcoRII, N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.330.10 Mainly Beta Beta Barrel At1g16640 B3 domain DNA-binding pseudobarrel domain 1na6A01
4I1KA 3HQFA 1WIDA 1YELA 4LDVA 4LDWA 4LDUA 4LDYA 4LDXA 1NA6A
chains in the Genus database with same CATH superfamily
2C1LA 4I1KA 3ZI5A 3HQFA 1N0GA 1N0FA 1WIDA 1YELA 4LDVA 4LDWA 1N0EA 4LDUA 4LDYA 4LDXA 1NA6A
chains in the Genus database with same CATH topology
4I1KA 3HQFA 1WIDA 1YELA 4LDVA 4LDWA 4LDUA 4LDYA 4LDXA 1NA6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4I1K A;  3HQF A;  1WID A;  1YEL A;  4LDV A;  4LDW A;  4LDU A;  4LDY A;  4LDX A;  1NA6 A; 
#chains in the Genus database with same CATH topology
 2C1L A;  4I1K A;  3ZI5 A;  3HQF A;  1N0G A;  1N0F A;  1WID A;  1YEL A;  4LDV A;  4LDW A;  1N0E A;  4LDU A;  4LDY A;  4LDX A;  1NA6 A; 
#chains in the Genus database with same CATH homology
 4I1K A;  3HQF A;  1WID A;  1YEL A;  4LDV A;  4LDW A;  4LDU A;  4LDY A;  4LDX A;  1NA6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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