1NB8A

Structure of the catalytic domain of usp7 (hausp)
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
347
structure length
332
Chain Sequence
KKHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
publication title Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde
pubmed doi rcsb
source organism Homo sapiens
total genus 94
structure length 332
sequence length 347
chains with identical sequence B
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2002-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00443 UCH Ubiquitin carboxyl-terminal hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.210.10 Mainly Beta Single Sheet ubp-family deubiquitinating enzyme fold ubp-family deubiquitinating enzyme superfamily 1nb8A02
1NB8A 4M5WA 4M5XA 2F1ZA 1NBFA
chains in the Genus database with same CATH superfamily
1NB8A 3FRPB 3HRZC 4M5WA 4M5XA 3HS0C 2F1ZA 1NBFA
chains in the Genus database with same CATH topology
1NB8A 4M5WA 4M5XA 2F1ZA 1NBFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NB8 A;  4M5W A;  4M5X A;  2F1Z A;  1NBF A; 
#chains in the Genus database with same CATH topology
 1NB8 A;  3FRP B;  3HRZ C;  4M5W A;  4M5X A;  3HS0 C;  2F1Z A;  1NBF A; 
#chains in the Genus database with same CATH homology
 1NB8 A;  4M5W A;  4M5X A;  2F1Z A;  1NBF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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