1NDBA

Crystal structure of carnitine acetyltransferase
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
596
structure length
596
Chain Sequence
b'AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 198
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA02
1NDFA 2FY3A 2RCUA 2FYOA 2H3PA 1T1UA 1T7NA 1T7QA 4EYWA 1NM8A 1T7OA 2FY5A 2H3WA 2H3UA 2FY4A 4EP9A 2FW3A 2H4TA 1NDBA 2DEBA 1S5OA 2FY2A 1Q6XA 1NDIA 4EPHA
chains in the Genus database with same CATH superfamily
2FY3A 2RCUA 2FYOA 1C4TA 5DU9A 1T1UA 1EABA 2XHGA 1T7OA 3CLAA 2RKVA 1SCZA 2H3UA 4EP9A 2H4TA 3U9FA 5FANA 5DUAA 4G2MA 1DPCA 1NOCB 1S5OA 1EADA 1Q6XA 1DPDA 3MAEA 2VSQA 1XMCA 1NDIA 3FOTA 5T3EA 2H3PA 1NM8A 2FY5A 2H3WA 4N72A 2FY4A 2FW3A 4CLAA 4JN3A 3L60A 2E1TA 1Q23A 1EAFA 1DPBA 2II3A 2JGPA 5KJTA 1CLAA 3B30A 2BGHA 4EPHA 4G22A 1PD5A 1EACA 4KE4A 1T7NA 1T7QA 4EYWA 4JN5A 3FP0A 1L5AA 3U9BA 4KECA 2XR7A 1NDBA 4G0BA 1Q9JA 5KJWA 2FY2A 1QCAA 5KJVA 1EAAA 1EAEA 3B2SA 1CIAA 5KJUA 1NDFA 4HVMA 1E2OA 2ZBAA 2I9DA 1XL8A 5FALA 2CLAA 1XL7A 2II5A 2DEBA 2RKTA 2E1VA 2II4A 1XMDA 5KJSA 2IHWA 2E1UA
chains in the Genus database with same CATH topology
1NDFA 2FY3A 5T3EA 2RCUA 2FYOA 2H3PA 5DU9A 1T1UA 1T7NA 4HVMA 1T7QA 4EYWA 1NM8A 2XHGA 1T7OA 4JN5A 2FY5A 2H3WA 3FP0A 2H3UA 2FY4A 1L5AA 4EP9A 2FW3A 2H4TA 5DUAA 1NDBA 4JN3A 2DEBA 1Q9JA 1S5OA 2FY2A 1Q6XA 2VSQA 2JGPA 1NDIA 3FOTA 4EPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NDF A;  2FY3 A;  2RCU A;  2FYO A;  2H3P A;  1T1U A;  1T7N A;  1T7Q A;  4EYW A;  1NM8 A;  1T7O A;  2FY5 A;  2H3W A;  2H3U A;  2FY4 A;  4EP9 A;  2FW3 A;  2H4T A;  1NDB A;  2DEB A;  1S5O A;  2FY2 A;  1Q6X A;  1NDI A;  4EPH A; 
#chains in the Genus database with same CATH topology
 2FY3 A;  2RCU A;  2FYO A;  1C4T A;  5DU9 A;  1T1U A;  1EAB A;  2XHG A;  1T7O A;  3CLA A;  2RKV A;  1SCZ A;  2H3U A;  4EP9 A;  2H4T A;  3U9F A;  5FAN A;  5DUA A;  4G2M A;  1DPC A;  1NOC B;  1S5O A;  1EAD A;  1Q6X A;  1DPD A;  3MAE A;  2VSQ A;  1XMC A;  1NDI A;  3FOT A;  5T3E A;  2H3P A;  1NM8 A;  2FY5 A;  2H3W A;  4N72 A;  2FY4 A;  2FW3 A;  4CLA A;  4JN3 A;  3L60 A;  2E1T A;  1Q23 A;  1EAF A;  1DPB A;  2II3 A;  2JGP A;  5KJT A;  1CLA A;  3B30 A;  2BGH A;  4EPH A;  4G22 A;  1PD5 A;  1EAC A;  4KE4 A;  1T7N A;  1T7Q A;  4EYW A;  4JN5 A;  3FP0 A;  1L5A A;  3U9B A;  4KEC A;  2XR7 A;  1NDB A;  4G0B A;  1Q9J A;  5KJW A;  2FY2 A;  1QCA A;  5KJV A;  1EAA A;  1EAE A;  3B2S A;  1CIA A;  5KJU A;  1NDF A;  4HVM A;  1E2O A;  2ZBA A;  2I9D A;  1XL8 A;  5FAL A;  2CLA A;  1XL7 A;  2II5 A;  2DEB A;  2RKT A;  2E1V A;  2II4 A;  1XMD A;  5KJS A;  2IHW A;  2E1U A; 
#chains in the Genus database with same CATH homology
 1NDF A;  2FY3 A;  5T3E A;  2RCU A;  2FYO A;  2H3P A;  5DU9 A;  1T1U A;  1T7N A;  4HVM A;  1T7Q A;  4EYW A;  1NM8 A;  2XHG A;  1T7O A;  4JN5 A;  2FY5 A;  2H3W A;  3FP0 A;  2H3U A;  2FY4 A;  1L5A A;  4EP9 A;  2FW3 A;  2H4T A;  5DUA A;  1NDB A;  4JN3 A;  2DEB A;  1Q9J A;  1S5O A;  2FY2 A;  1Q6X A;  2VSQ A;  2JGP A;  1NDI A;  3FOT A;  4EPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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