1NDBA

Crystal structure of carnitine acetyltransferase
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 198
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndbA02
4EYWA 2FY4A 1NDBA 1T7QA 2DEBA 4EP9A 1Q6XA 1NDIA 1T7NA 2FY5A 1NM8A 2FYOA 2H3UA 2FW3A 2H3PA 4EPHA 2H4TA 1T1UA 1NDFA 2FY3A 2FY2A 1T7OA 2H3WA 2RCUA 1S5OA
chains in the Genus database with same CATH superfamily
4N72A 4EYWA 5KJVA 4CLAA 3MAEA 2I9DA 3B2SA 1NDIA 1CLAA 3FP0A 5T3EA 1DPDA 2CLAA 2H3UA 5FALA 4HVMA 4EPHA 2IHWA 5KJSA 1S5OA 1QCAA 4KECA 2E1UA 1T7QA 3CLAA 2VSQA 2II4A 5KJWA 1EABA 1XL7A 3U9BA 5FANA 1CIAA 2BGHA 2H3PA 1Q23A 2II5A 3FOTA 3B30A 1EAAA 1SCZA 1Q9JA 2XHGA 1XMCA 3L60A 1NOCB 1EACA 1C4TA 1NDBA 2DEBA 2E1VA 1EAEA 5DU9A 1T7NA 2FYOA 2ZBAA 2XR7A 1PD5A 1NDFA 5KJTA 4JN5A 2FY3A 4G2MA 5KJUA 1T7OA 2RCUA 2JGPA 1E2OA 2E1TA 1DPBA 2II3A 4KE4A 4G0BA 2FY4A 1EAFA 4EP9A 3U9FA 1DPCA 1L5AA 1Q6XA 1EADA 2FY5A 1NM8A 2FW3A 5DUAA 2H4TA 1T1UA 2FY2A 1XL8A 4JN3A 2RKTA 2H3WA 1XMDA 2RKVA 4G22A
chains in the Genus database with same CATH topology
4EYWA 2FY4A 1NDBA 1T7QA 2DEBA 4EP9A 1L5AA 1Q6XA 1NDIA 2VSQA 5DU9A 3FP0A 5T3EA 1T7NA 2FY5A 1NM8A 2FYOA 2H3UA 4HVMA 2FW3A 5DUAA 2H3PA 4EPHA 2H4TA 1T1UA 1NDFA 3FOTA 4JN5A 2FY3A 2FY2A 4JN3A 1T7OA 2H3WA 2RCUA 1Q9JA 2JGPA 2XHGA 1S5OA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EYW A;  2FY4 A;  1NDB A;  1T7Q A;  2DEB A;  4EP9 A;  1Q6X A;  1NDI A;  1T7N A;  2FY5 A;  1NM8 A;  2FYO A;  2H3U A;  2FW3 A;  2H3P A;  4EPH A;  2H4T A;  1T1U A;  1NDF A;  2FY3 A;  2FY2 A;  1T7O A;  2H3W A;  2RCU A;  1S5O A; 
#chains in the Genus database with same CATH topology
 4N72 A;  4EYW A;  5KJV A;  4CLA A;  3MAE A;  2I9D A;  3B2S A;  1NDI A;  1CLA A;  3FP0 A;  5T3E A;  1DPD A;  2CLA A;  2H3U A;  5FAL A;  4HVM A;  4EPH A;  2IHW A;  5KJS A;  1S5O A;  1QCA A;  4KEC A;  2E1U A;  1T7Q A;  3CLA A;  2VSQ A;  2II4 A;  5KJW A;  1EAB A;  1XL7 A;  3U9B A;  5FAN A;  1CIA A;  2BGH A;  2H3P A;  1Q23 A;  2II5 A;  3FOT A;  3B30 A;  1EAA A;  1SCZ A;  1Q9J A;  2XHG A;  1XMC A;  3L60 A;  1NOC B;  1EAC A;  1C4T A;  1NDB A;  2DEB A;  2E1V A;  1EAE A;  5DU9 A;  1T7N A;  2FYO A;  2ZBA A;  2XR7 A;  1PD5 A;  1NDF A;  5KJT A;  4JN5 A;  2FY3 A;  4G2M A;  5KJU A;  1T7O A;  2RCU A;  2JGP A;  1E2O A;  2E1T A;  1DPB A;  2II3 A;  4KE4 A;  4G0B A;  2FY4 A;  1EAF A;  4EP9 A;  3U9F A;  1DPC A;  1L5A A;  1Q6X A;  1EAD A;  2FY5 A;  1NM8 A;  2FW3 A;  5DUA A;  2H4T A;  1T1U A;  2FY2 A;  1XL8 A;  4JN3 A;  2RKT A;  2H3W A;  1XMD A;  2RKV A;  4G22 A; 
#chains in the Genus database with same CATH homology
 4EYW A;  2FY4 A;  1NDB A;  1T7Q A;  2DEB A;  4EP9 A;  1L5A A;  1Q6X A;  1NDI A;  2VSQ A;  5DU9 A;  3FP0 A;  5T3E A;  1T7N A;  2FY5 A;  1NM8 A;  2FYO A;  2H3U A;  4HVM A;  2FW3 A;  5DUA A;  2H3P A;  4EPH A;  2H4T A;  1T1U A;  1NDF A;  3FOT A;  4JN5 A;  2FY3 A;  2FY2 A;  4JN3 A;  1T7O A;  2H3W A;  2RCU A;  1Q9J A;  2JGP A;  2XHG A;  1S5O A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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