1NDFA

Carnitine acetyltransferase in complex with carnitine
Total Genus 214
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
214
sequence length
596
structure length
596
Chain Sequence
b'AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 214
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndfA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndfA02
2FY3A 2FY5A 1NDIA 1NDFA 2FYOA 1T1UA 1NM8A 4EYWA 2H4TA 1T7OA 2RCUA 4EPHA 1NDBA 2H3UA 4EP9A 1S5OA 1T7QA 2FY2A 1T7NA 2FY4A 1Q6XA 2DEBA 2H3WA 2FW3A 2H3PA
chains in the Genus database with same CATH superfamily
1EABA 4JN3A 5DU9A 1CIAA 2E1TA 2RKTA 1XMCA 5KJUA 1SCZA 2II5A 1C4TA 1XL8A 5FALA 5KJSA 1Q9JA 4N72A 1PD5A 2ZBAA 5T3EA 3U9BA 1NOCB 4HVMA 2FW3A 2E1UA 1EADA 2RKVA 1EAEA 2JGPA 2FY3A 2IHWA 3L60A 2FY5A 1NDIA 3CLAA 1DPBA 1NM8A 2I9DA 4KECA 1QCAA 5KJTA 1DPCA 4EP9A 1T7QA 1T7NA 1Q6XA 2II4A 2BGHA 1XMDA 4CLAA 1NDFA 1Q23A 1T1UA 4EYWA 2H4TA 1T7OA 4EPHA 1NDBA 2XHGA 4G0BA 5DUAA 2FY4A 5FANA 1CLAA 1XL7A 2H3WA 3B30A 1L5AA 1EAFA 2VSQA 4G2MA 2FYOA 3FOTA 5KJWA 3B2SA 1DPDA 1E2OA 2RCUA 4JN5A 5KJVA 2H3UA 1S5OA 1EAAA 2XR7A 2E1VA 2FY2A 3FP0A 3U9FA 3MAEA 1EACA 4G22A 2II3A 2DEBA 2CLAA 2H3PA 4KE4A
chains in the Genus database with same CATH topology
2FY3A 2VSQA 2FY5A 1NDIA 1NDFA 4JN3A 5DU9A 2FYOA 1T1UA 3FOTA 1NM8A 4EYWA 2H4TA 1T7OA 2RCUA 4JN5A 4EPHA 1NDBA 2H3UA 2XHGA 1Q9JA 1S5OA 3FP0A 5DUAA 1T7QA 2FY2A 1T7NA 2FY4A 4EP9A 1Q6XA 5T3EA 4HVMA 2DEBA 2H3WA 1L5AA 2FW3A 2H3PA 2JGPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY3 A;  2FY5 A;  1NDI A;  1NDF A;  2FYO A;  1T1U A;  1NM8 A;  4EYW A;  2H4T A;  1T7O A;  2RCU A;  4EPH A;  1NDB A;  2H3U A;  4EP9 A;  1S5O A;  1T7Q A;  2FY2 A;  1T7N A;  2FY4 A;  1Q6X A;  2DEB A;  2H3W A;  2FW3 A;  2H3P A; 
#chains in the Genus database with same CATH topology
 1EAB A;  4JN3 A;  5DU9 A;  1CIA A;  2E1T A;  2RKT A;  1XMC A;  5KJU A;  1SCZ A;  2II5 A;  1C4T A;  1XL8 A;  5FAL A;  5KJS A;  1Q9J A;  4N72 A;  1PD5 A;  2ZBA A;  5T3E A;  3U9B A;  1NOC B;  4HVM A;  2FW3 A;  2E1U A;  1EAD A;  2RKV A;  1EAE A;  2JGP A;  2FY3 A;  2IHW A;  3L60 A;  2FY5 A;  1NDI A;  3CLA A;  1DPB A;  1NM8 A;  2I9D A;  4KEC A;  1QCA A;  5KJT A;  1DPC A;  4EP9 A;  1T7Q A;  1T7N A;  1Q6X A;  2II4 A;  2BGH A;  1XMD A;  4CLA A;  1NDF A;  1Q23 A;  1T1U A;  4EYW A;  2H4T A;  1T7O A;  4EPH A;  1NDB A;  2XHG A;  4G0B A;  5DUA A;  2FY4 A;  5FAN A;  1CLA A;  1XL7 A;  2H3W A;  3B30 A;  1L5A A;  1EAF A;  2VSQ A;  4G2M A;  2FYO A;  3FOT A;  5KJW A;  3B2S A;  1DPD A;  1E2O A;  2RCU A;  4JN5 A;  5KJV A;  2H3U A;  1S5O A;  1EAA A;  2XR7 A;  2E1V A;  2FY2 A;  3FP0 A;  3U9F A;  3MAE A;  1EAC A;  4G22 A;  2II3 A;  2DEB A;  2CLA A;  2H3P A;  4KE4 A; 
#chains in the Genus database with same CATH homology
 2FY3 A;  2VSQ A;  2FY5 A;  1NDI A;  1NDF A;  4JN3 A;  5DU9 A;  2FYO A;  1T1U A;  3FOT A;  1NM8 A;  4EYW A;  2H4T A;  1T7O A;  2RCU A;  4JN5 A;  4EPH A;  1NDB A;  2H3U A;  2XHG A;  1Q9J A;  1S5O A;  3FP0 A;  5DUA A;  1T7Q A;  2FY2 A;  1T7N A;  2FY4 A;  4EP9 A;  1Q6X A;  5T3E A;  4HVM A;  2DEB A;  2H3W A;  1L5A A;  2FW3 A;  2H3P A;  2JGP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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