1NDFA

Carnitine acetyltransferase in complex with carnitine
Total Genus 214
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
214
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
total genus 214
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndfA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndfA02
4EYWA 1T7QA 2DEBA 1NDBA 1Q6XA 1NDIA 2FYOA 2FY5A 4EPHA 2H3UA 2RCUA 1T7NA 2FY3A 1T1UA 2H4TA 2FW3A 1NM8A 1S5OA 1NDFA 2FY4A 1T7OA 2H3PA 2FY2A 2H3WA 4EP9A
chains in the Genus database with same CATH superfamily
3B2SA 4G2MA 1XMCA 2DEBA 5FANA 3U9BA 1NDIA 2FYOA 2RKTA 4EPHA 3MAEA 2II3A 5FALA 1DPDA 1EAFA 1E2OA 2VSQA 3FP0A 1CIAA 1EAAA 4G0BA 4JN3A 4EYWA 4N72A 1L5AA 5KJTA 2E1TA 3FOTA 2ZBAA 1C4TA 2II5A 3CLAA 2E1UA 1DPCA 5KJUA 1Q6XA 2XR7A 4KECA 5KJSA 2H3UA 1EADA 2FW3A 1NM8A 1DPBA 1Q9JA 4G22A 1QCAA 1CLAA 4HVMA 3B30A 4KE4A 2JGPA 5KJVA 1NDBA 5KJWA 5DU9A 2FY5A 5DUAA 1PD5A 1T7NA 1T1UA 2H4TA 3U9FA 1NDFA 2FY4A 1T7OA 4CLAA 2II4A 2IHWA 5T3EA 2BGHA 1T7QA 1EAEA 1EABA 3L60A 1XL7A 2XHGA 2I9DA 4JN5A 1XL8A 1SCZA 2RCUA 2E1VA 1Q23A 1XMDA 2FY3A 1EACA 1NOCB 1S5OA 2RKVA 2H3PA 2FY2A 2CLAA 2H3WA 4EP9A
chains in the Genus database with same CATH topology
4HVMA 5T3EA 4JN3A 4EYWA 1L5AA 1T7QA 3FOTA 2DEBA 2XHGA 2JGPA 1NDBA 1Q6XA 4JN5A 1NDIA 2FYOA 5DU9A 2FY5A 4EPHA 2H3UA 2RCUA 5DUAA 1T7NA 2FY3A 1T1UA 2H4TA 2FW3A 1NM8A 1S5OA 1NDFA 2FY4A 1T7OA 2H3PA 2VSQA 2FY2A 1Q9JA 3FP0A 2H3WA 4EP9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EYW A;  1T7Q A;  2DEB A;  1NDB A;  1Q6X A;  1NDI A;  2FYO A;  2FY5 A;  4EPH A;  2H3U A;  2RCU A;  1T7N A;  2FY3 A;  1T1U A;  2H4T A;  2FW3 A;  1NM8 A;  1S5O A;  1NDF A;  2FY4 A;  1T7O A;  2H3P A;  2FY2 A;  2H3W A;  4EP9 A; 
#chains in the Genus database with same CATH topology
 3B2S A;  4G2M A;  1XMC A;  2DEB A;  5FAN A;  3U9B A;  1NDI A;  2FYO A;  2RKT A;  4EPH A;  3MAE A;  2II3 A;  5FAL A;  1DPD A;  1EAF A;  1E2O A;  2VSQ A;  3FP0 A;  1CIA A;  1EAA A;  4G0B A;  4JN3 A;  4EYW A;  4N72 A;  1L5A A;  5KJT A;  2E1T A;  3FOT A;  2ZBA A;  1C4T A;  2II5 A;  3CLA A;  2E1U A;  1DPC A;  5KJU A;  1Q6X A;  2XR7 A;  4KEC A;  5KJS A;  2H3U A;  1EAD A;  2FW3 A;  1NM8 A;  1DPB A;  1Q9J A;  4G22 A;  1QCA A;  1CLA A;  4HVM A;  3B30 A;  4KE4 A;  2JGP A;  5KJV A;  1NDB A;  5KJW A;  5DU9 A;  2FY5 A;  5DUA A;  1PD5 A;  1T7N A;  1T1U A;  2H4T A;  3U9F A;  1NDF A;  2FY4 A;  1T7O A;  4CLA A;  2II4 A;  2IHW A;  5T3E A;  2BGH A;  1T7Q A;  1EAE A;  1EAB A;  3L60 A;  1XL7 A;  2XHG A;  2I9D A;  4JN5 A;  1XL8 A;  1SCZ A;  2RCU A;  2E1V A;  1Q23 A;  1XMD A;  2FY3 A;  1EAC A;  1NOC B;  1S5O A;  2RKV A;  2H3P A;  2FY2 A;  2CLA A;  2H3W A;  4EP9 A; 
#chains in the Genus database with same CATH homology
 4HVM A;  5T3E A;  4JN3 A;  4EYW A;  1L5A A;  1T7Q A;  3FOT A;  2DEB A;  2XHG A;  2JGP A;  1NDB A;  1Q6X A;  4JN5 A;  1NDI A;  2FYO A;  5DU9 A;  2FY5 A;  4EPH A;  2H3U A;  2RCU A;  5DUA A;  1T7N A;  2FY3 A;  1T1U A;  2H4T A;  2FW3 A;  1NM8 A;  1S5O A;  1NDF A;  2FY4 A;  1T7O A;  2H3P A;  2VSQ A;  2FY2 A;  1Q9J A;  3FP0 A;  2H3W A;  4EP9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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