1NEAA

Three-dimensional solution structure of a curaremimetic toxin from naja nigricollis venom: a proton nmr and molecular modeling study
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
61
structure length
61
Chain Sequence
LECHNQQSSQPPTTKTCPGETNCYKKVWRDHRGTIIERGCGCPTVKPGIKLNCCTTDKCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
source organism Naja nigricollis
publication title Three-dimensional solution structure of a curaremimetic toxin from Naja nigricollis venom: a proton NMR and molecular modeling study.
pubmed doi rcsb
molecule keywords TOXIN ALPHA
total genus 3
structure length 61
sequence length 61
ec nomenclature
pdb deposition date 1992-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1neaA00
4FAOE 6EBXA 1ABTA 1PLOA 1ES7B 2H7ZA 2OFSA 1CXOA 1HOYA 1KFHA 1KBTA 1B41B 1ERAA 4ZQYA 1G6MA 1DRSA 2PJYB 1IDIA 1RGJA 1IQ9A 1CREA 3QB4B 1F8UB 2HLRA 1LX5B 2H5FA 1JGKA 1FF4A 1HAAA 4DO8A 1L4WA 1IJCA 1KS6A 1UG4A 1ERGA 1MAHF 1KBSA 1KXIA 1HAJA 3U74U 2UX2A 4HQPF 1CODA 1NORA 3ERAA 1IDGA 3EVSC 3VTSA 2BHIA 2QJAC 5DU1A 1IK8A 1CXNA 3BT1U 2L03A 2MJ4A 3KFDI 1BXPA 2K3GA 1H0JA 3U73U 2CTXA 1LXGA 2MFAA 2CRSA 2LCRA 4OM5A 1COEA 1QKEA 1CDSA 2H8UA 2MJ0A 2MJYA 3KFDE 4BIKB 4EY8B 1KBAA 2L5SA 4BDTB 2PJYC 1M9ZA 2X8BB 1LXHA 1REWC 1W6BA 2LA1A 2QJ9C 4AEAA 1CTXA 2JQPA 2CDXA 1CDRA 1IDLA 1FASA 3BT2U 1FSCA 1NTXA 2H7ZB 2H64C 1S4YA 1XT3A 1ZADA 1HC9B 1NEAA 1LSIA 1CDQA 2GOOC 2MHYA 1ONJA 2HLQA 1KTZB 3HH7A 2JVEA 5EBXA 1NYUA 1CHVS 1NXBA 1NTNA 1F94A 1VB0A 1KU6B 2BTXA 3NH7A 4OM4A 4UY2C 1FSSB 1V6PA 3NDSA 1IKCA 4RUDA 5DZ5A 2UWRA 1MR6A 1CB9A 5IMTD 2I9BE 1TXAA 1YWHA 3NEQA 1BTEA 1TXBA 4QTIU 3LAQU 1JBDA 2ABXA 1TGXA 2FD6U 2J8BA 5DO6A 1CVOA 4P7UA 1CCQA 1IDHA 1HC9A 4XJJA 2NBTA 4IYEA 1TFSA 3PLCA 4LFTA 1FRAA 1QKDA 1LJZA 1KC4A 2VLWA 2N99A 3FEVA 1QM7A 3EBXA 2H62D 1RL5A 4FAOC 2QJBC 1JE9A 5IMYC 2CRTA 2QC1A 2H64B 2MUPA 2H62C 1I02A 1KL8A 1CDTA 2MUOA 1FFJA 2GOOB 1NYSA 2ERAA 1CRFA 2CCXA
chains in the Genus database with same CATH superfamily
4FAOE 6EBXA 1ABTA 1PLOA 1ES7B 2H7ZA 2OFSA 1CXOA 1HOYA 1KFHA 1KBTA 1B41B 1ERAA 4ZQYA 1G6MA 1DRSA 2PJYB 1IDIA 1RGJA 1IQ9A 1CREA 3QB4B 1F8UB 2HLRA 1LX5B 2H5FA 1JGKA 1FF4A 1HAAA 4DO8A 1L4WA 1IJCA 1KS6A 1UG4A 1ERGA 1MAHF 1KBSA 1KXIA 1HAJA 3U74U 2UX2A 4HQPF 1CODA 1NORA 3ERAA 1IDGA 3EVSC 3VTSA 2BHIA 2QJAC 5DU1A 1IK8A 1CXNA 3BT1U 2L03A 2MJ4A 3KFDI 1BXPA 2K3GA 1H0JA 3U73U 2CTXA 1LXGA 2MFAA 2CRSA 2LCRA 4OM5A 1COEA 1QKEA 1CDSA 2H8UA 2MJ0A 2MJYA 3KFDE 4BIKB 4EY8B 1KBAA 2L5SA 4BDTB 2PJYC 1M9ZA 2X8BB 1LXHA 1REWC 1W6BA 2LA1A 2QJ9C 4AEAA 1CTXA 2JQPA 2CDXA 1CDRA 1IDLA 1FASA 3BT2U 1FSCA 1NTXA 2H7ZB 2H64C 1S4YA 1XT3A 1ZADA 1HC9B 1NEAA 1LSIA 1CDQA 2GOOC 2MHYA 1ONJA 2HLQA 1KTZB 3HH7A 2JVEA 5EBXA 1NYUA 1CHVS 1NXBA 1NTNA 1F94A 1VB0A 1KU6B 2BTXA 3NH7A 4OM4A 4UY2C 1FSSB 1V6PA 3NDSA 1IKCA 4RUDA 5DZ5A 2UWRA 1MR6A 1CB9A 5IMTD 2I9BE 1TXAA 1YWHA 3NEQA 1BTEA 1TXBA 4QTIU 3LAQU 1JBDA 2ABXA 1TGXA 2FD6U 2J8BA 5DO6A 1CVOA 4P7UA 1CCQA 1IDHA 1HC9A 4XJJA 2NBTA 4IYEA 1TFSA 3PLCA 4LFTA 1FRAA 1QKDA 1LJZA 1KC4A 2VLWA 2N99A 3FEVA 1QM7A 3EBXA 2H62D 1RL5A 4FAOC 2QJBC 1JE9A 5IMYC 2CRTA 4KSNA 2QC1A 2H64B 2MUPA 2H62C 1I02A 1KL8A 1CDTA 2MUOA 1FFJA 2GOOB 1NYSA 2ERAA 1CRFA 2CCXA
chains in the Genus database with same CATH topology
4FAOE 6EBXA 1ABTA 1PLOA 1ES7B 2H7ZA 2OFSA 1CXOA 1HOYA 1KFHA 1KBTA 1B41B 1ERAA 4ZQYA 1G6MA 1DRSA 2PJYB 1IDIA 1RGJA 1IQ9A 1CREA 3QB4B 1F8UB 2HLRA 1LX5B 2H5FA 1JGKA 1FF4A 1HAAA 4DO8A 1L4WA 1IJCA 1KS6A 1UG4A 1ERGA 1MAHF 1KBSA 1KXIA 1HAJA 3U74U 2UX2A 4HQPF 1CODA 1NORA 3ERAA 1IDGA 3EVSC 3VTSA 2BHIA 2QJAC 5DU1A 1IK8A 1CXNA 3BT1U 2L03A 2MJ4A 3KFDI 1BXPA 2K3GA 1H0JA 3U73U 2CTXA 1LXGA 2MFAA 2CRSA 2LCRA 4OM5A 1COEA 1QKEA 1CDSA 2H8UA 2MJ0A 2MJYA 3KFDE 4BIKB 4EY8B 1KBAA 2L5SA 4BDTB 2PJYC 1M9ZA 2X8BB 1LXHA 1REWC 1W6BA 2LA1A 2QJ9C 4AEAA 1CTXA 2JQPA 2CDXA 1CDRA 1IDLA 1FASA 3BT2U 1FSCA 1NTXA 2H7ZB 2H64C 1S4YA 1XT3A 1ZADA 1HC9B 1NEAA 1LSIA 1CDQA 2GOOC 2MHYA 1ONJA 2HLQA 1KTZB 3HH7A 2JVEA 5EBXA 1NYUA 1CHVS 1NXBA 1NTNA 1F94A 1VB0A 1KU6B 2BTXA 3NH7A 4OM4A 4UY2C 1FSSB 1V6PA 3NDSA 1IKCA 4RUDA 5DZ5A 2UWRA 1MR6A 1CB9A 5IMTD 2I9BE 1TXAA 1YWHA 3NEQA 1BTEA 1TXBA 4QTIU 3LAQU 1JBDA 2ABXA 1TGXA 2FD6U 2J8BA 5DO6A 1CVOA 4P7UA 1CCQA 1IDHA 1HC9A 4XJJA 2NBTA 4IYEA 1TFSA 3PLCA 4LFTA 1FRAA 1QKDA 1LJZA 1KC4A 2VLWA 2N99A 3FEVA 1QM7A 3EBXA 2H62D 1RL5A 4FAOC 2QJBC 1JE9A 5IMYC 2CRTA 4KSNA 2QC1A 2H64B 2MUPA 2H62C 1I02A 1KL8A 1CDTA 2MUOA 1FFJA 2GOOB 1NYSA 2ERAA 1CRFA 2CCXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FAO E;  6EBX A;  1ABT A;  1PLO A;  1ES7 B;  2H7Z A;  2OFS A;  1CXO A;  1HOY A;  1KFH A;  1KBT A;  1B41 B;  1ERA A;  4ZQY A;  1G6M A;  1DRS A;  2PJY B;  1IDI A;  1RGJ A;  1IQ9 A;  1CRE A;  3QB4 B;  1F8U B;  2HLR A;  1LX5 B;  2H5F A;  1JGK A;  1FF4 A;  1HAA A;  4DO8 A;  1L4W A;  1IJC A;  1KS6 A;  1UG4 A;  1ERG A;  1MAH F;  1KBS A;  1KXI A;  1HAJ A;  3U74 U;  2UX2 A;  4HQP F;  1COD A;  1NOR A;  3ERA A;  1IDG A;  3EVS C;  3VTS A;  2BHI A;  2QJA C;  5DU1 A;  1IK8 A;  1CXN A;  3BT1 U;  2L03 A;  2MJ4 A;  3KFD I;  1BXP A;  2K3G A;  1H0J A;  3U73 U;  2CTX A;  1LXG A;  2MFA A;  2CRS A;  2LCR A;  4OM5 A;  1COE A;  1QKE A;  1CDS A;  2H8U A;  2MJ0 A;  2MJY A;  3KFD E;  4BIK B;  4EY8 B;  1KBA A;  2L5S A;  4BDT B;  2PJY C;  1M9Z A;  2X8B B;  1LXH A;  1REW C;  1W6B A;  2LA1 A;  2QJ9 C;  4AEA A;  1CTX A;  2JQP A;  2CDX A;  1CDR A;  1IDL A;  1FAS A;  3BT2 U;  1FSC A;  1NTX A;  2H7Z B;  2H64 C;  1S4Y A;  1XT3 A;  1ZAD A;  1HC9 B;  1NEA A;  1LSI A;  1CDQ A;  2GOO C;  2MHY A;  1ONJ A;  2HLQ A;  1KTZ B;  3HH7 A;  2JVE A;  5EBX A;  1NYU A;  1CHV S;  1NXB A;  1NTN A;  1F94 A;  1VB0 A;  1KU6 B;  2BTX A;  3NH7 A;  4OM4 A;  4UY2 C;  1FSS B;  1V6P A;  3NDS A;  1IKC A;  4RUD A;  5DZ5 A;  2UWR A;  1MR6 A;  1CB9 A;  5IMT D;  2I9B E;  1TXA A;  1YWH A;  3NEQ A;  1BTE A;  1TXB A;  4QTI U;  3LAQ U;  1JBD A;  2ABX A;  1TGX A;  2FD6 U;  2J8B A;  5DO6 A;  1CVO A;  4P7U A;  1CCQ A;  1IDH A;  1HC9 A;  4XJJ A;  2NBT A;  4IYE A;  1TFS A;  3PLC A;  4LFT A;  1FRA A;  1QKD A;  1LJZ A;  1KC4 A;  2VLW A;  2N99 A;  3FEV A;  1QM7 A;  3EBX A;  2H62 D;  1RL5 A;  4FAO C;  2QJB C;  1JE9 A;  5IMY C;  2CRT A;  2QC1 A;  2H64 B;  2MUP A;  2H62 C;  1I02 A;  1KL8 A;  1CDT A;  2MUO A;  1FFJ A;  2GOO B;  1NYS A;  2ERA A;  1CRF A;  2CCX A; 
#chains in the Genus database with same CATH topology
 4FAO E;  6EBX A;  1ABT A;  1PLO A;  1ES7 B;  2H7Z A;  2OFS A;  1CXO A;  1HOY A;  1KFH A;  1KBT A;  1B41 B;  1ERA A;  4ZQY A;  1G6M A;  1DRS A;  2PJY B;  1IDI A;  1RGJ A;  1IQ9 A;  1CRE A;  3QB4 B;  1F8U B;  2HLR A;  1LX5 B;  2H5F A;  1JGK A;  1FF4 A;  1HAA A;  4DO8 A;  1L4W A;  1IJC A;  1KS6 A;  1UG4 A;  1ERG A;  1MAH F;  1KBS A;  1KXI A;  1HAJ A;  3U74 U;  2UX2 A;  4HQP F;  1COD A;  1NOR A;  3ERA A;  1IDG A;  3EVS C;  3VTS A;  2BHI A;  2QJA C;  5DU1 A;  1IK8 A;  1CXN A;  3BT1 U;  2L03 A;  2MJ4 A;  3KFD I;  1BXP A;  2K3G A;  1H0J A;  3U73 U;  2CTX A;  1LXG A;  2MFA A;  2CRS A;  2LCR A;  4OM5 A;  1COE A;  1QKE A;  1CDS A;  2H8U A;  2MJ0 A;  2MJY A;  3KFD E;  4BIK B;  4EY8 B;  1KBA A;  2L5S A;  4BDT B;  2PJY C;  1M9Z A;  2X8B B;  1LXH A;  1REW C;  1W6B A;  2LA1 A;  2QJ9 C;  4AEA A;  1CTX A;  2JQP A;  2CDX A;  1CDR A;  1IDL A;  1FAS A;  3BT2 U;  1FSC A;  1NTX A;  2H7Z B;  2H64 C;  1S4Y A;  1XT3 A;  1ZAD A;  1HC9 B;  1NEA A;  1LSI A;  1CDQ A;  2GOO C;  2MHY A;  1ONJ A;  2HLQ A;  1KTZ B;  3HH7 A;  2JVE A;  5EBX A;  1NYU A;  1CHV S;  1NXB A;  1NTN A;  1F94 A;  1VB0 A;  1KU6 B;  2BTX A;  3NH7 A;  4OM4 A;  4UY2 C;  1FSS B;  1V6P A;  3NDS A;  1IKC A;  4RUD A;  5DZ5 A;  2UWR A;  1MR6 A;  1CB9 A;  5IMT D;  2I9B E;  1TXA A;  1YWH A;  3NEQ A;  1BTE A;  1TXB A;  4QTI U;  3LAQ U;  1JBD A;  2ABX A;  1TGX A;  2FD6 U;  2J8B A;  5DO6 A;  1CVO A;  4P7U A;  1CCQ A;  1IDH A;  1HC9 A;  4XJJ A;  2NBT A;  4IYE A;  1TFS A;  3PLC A;  4LFT A;  1FRA A;  1QKD A;  1LJZ A;  1KC4 A;  2VLW A;  2N99 A;  3FEV A;  1QM7 A;  3EBX A;  2H62 D;  1RL5 A;  4FAO C;  2QJB C;  1JE9 A;  5IMY C;  2CRT A;  4KSN A;  2QC1 A;  2H64 B;  2MUP A;  2H62 C;  1I02 A;  1KL8 A;  1CDT A;  2MUO A;  1FFJ A;  2GOO B;  1NYS A;  2ERA A;  1CRF A;  2CCX A; 
#chains in the Genus database with same CATH homology
 4FAO E;  6EBX A;  1ABT A;  1PLO A;  1ES7 B;  2H7Z A;  2OFS A;  1CXO A;  1HOY A;  1KFH A;  1KBT A;  1B41 B;  1ERA A;  4ZQY A;  1G6M A;  1DRS A;  2PJY B;  1IDI A;  1RGJ A;  1IQ9 A;  1CRE A;  3QB4 B;  1F8U B;  2HLR A;  1LX5 B;  2H5F A;  1JGK A;  1FF4 A;  1HAA A;  4DO8 A;  1L4W A;  1IJC A;  1KS6 A;  1UG4 A;  1ERG A;  1MAH F;  1KBS A;  1KXI A;  1HAJ A;  3U74 U;  2UX2 A;  4HQP F;  1COD A;  1NOR A;  3ERA A;  1IDG A;  3EVS C;  3VTS A;  2BHI A;  2QJA C;  5DU1 A;  1IK8 A;  1CXN A;  3BT1 U;  2L03 A;  2MJ4 A;  3KFD I;  1BXP A;  2K3G A;  1H0J A;  3U73 U;  2CTX A;  1LXG A;  2MFA A;  2CRS A;  2LCR A;  4OM5 A;  1COE A;  1QKE A;  1CDS A;  2H8U A;  2MJ0 A;  2MJY A;  3KFD E;  4BIK B;  4EY8 B;  1KBA A;  2L5S A;  4BDT B;  2PJY C;  1M9Z A;  2X8B B;  1LXH A;  1REW C;  1W6B A;  2LA1 A;  2QJ9 C;  4AEA A;  1CTX A;  2JQP A;  2CDX A;  1CDR A;  1IDL A;  1FAS A;  3BT2 U;  1FSC A;  1NTX A;  2H7Z B;  2H64 C;  1S4Y A;  1XT3 A;  1ZAD A;  1HC9 B;  1NEA A;  1LSI A;  1CDQ A;  2GOO C;  2MHY A;  1ONJ A;  2HLQ A;  1KTZ B;  3HH7 A;  2JVE A;  5EBX A;  1NYU A;  1CHV S;  1NXB A;  1NTN A;  1F94 A;  1VB0 A;  1KU6 B;  2BTX A;  3NH7 A;  4OM4 A;  4UY2 C;  1FSS B;  1V6P A;  3NDS A;  1IKC A;  4RUD A;  5DZ5 A;  2UWR A;  1MR6 A;  1CB9 A;  5IMT D;  2I9B E;  1TXA A;  1YWH A;  3NEQ A;  1BTE A;  1TXB A;  4QTI U;  3LAQ U;  1JBD A;  2ABX A;  1TGX A;  2FD6 U;  2J8B A;  5DO6 A;  1CVO A;  4P7U A;  1CCQ A;  1IDH A;  1HC9 A;  4XJJ A;  2NBT A;  4IYE A;  1TFS A;  3PLC A;  4LFT A;  1FRA A;  1QKD A;  1LJZ A;  1KC4 A;  2VLW A;  2N99 A;  3FEV A;  1QM7 A;  3EBX A;  2H62 D;  1RL5 A;  4FAO C;  2QJB C;  1JE9 A;  5IMY C;  2CRT A;  4KSN A;  2QC1 A;  2H64 B;  2MUP A;  2H62 C;  1I02 A;  1KL8 A;  1CDT A;  2MUO A;  1FFJ A;  2GOO B;  1NYS A;  2ERA A;  1CRF A;  2CCX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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