1NEKD

Complex ii (succinate dehydrogenase) from e. coli with ubiquinone bound
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
113
structure length
113
Chain Sequence
SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Architecture of succinate dehydrogenase and reactive oxygen species generation.
pubmed doi rcsb
molecule tags Oxidoreductase/electron transport
source organism Escherichia coli
molecule keywords Succinate dehydrogenase flavoprotein subunit
total genus 47
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1nekD01
3AEFC 3AE6C 1ZP0D 4YT0C 2ACZD 3AE2C 2B76D 3AE9C 3VR9D 3VR8D 3ABVC 3P4PC 3AEDC 3P4SC 3AE8C 2WDRC 2WDVC 4YTPD 1L0VD 2WP9D 1KFYD 3CIRD 1ZOYD 5C3JD 3SFED 3AE5D 2WU5D 1NEKC 3AE1C 3AEFD 4YXDC 3AE6D 1YQ4D 3AECC 2WS3D 3AE9D 3AEGC 3VRAD 2WU2C 3P4PD 3AEDD 1YQ3C 2H89C 2WDVD 4YTMC 1QLBC 4YSYD 1KF6C 3AEAC 2WQYC 2WDQC 2BS4C 3P4QD 4YSZC 3AE1D 1NEKD 4YTNC 1E7PC 2FBWC 4YT0D 3AEEC 3VRBC 3AE2D 3AECD 3AE3C 3AE4C 3AE7C 3ABVD 2WU2D 2H88C 3P4RC 1NENC 5C2TC 1L0VC 2H89D 3P4SD 4KX6C 3AE8D 2WDRD 4YTMD 3SFDC 1KFYC 4YSXC 3AEBC 5C3JC 1ZOYC 1KF6D 3AEAD 3AE5C 2WU5C 4YSZD 1YQ4C 1ZP0C 4YTND 4YXDD 2ACZC 2FBWD 2BS3C 2WS3C 2B76C 3AEED 3VR9C 3VR8C 3VRAC 3VRBD 3AE3D 3AE4D 3AE7D 3AEGD 2H88D 3P4RD 1NEND 5C2TD 4YTPC 1YQ3D 4KX6D 4YSYC 2WP9C 3SFDD 4YSXD 3AEBD 3CIRC 3P4QC 2WQYD 3SFEC 2BS2C 2WDQD
chains in the Genus database with same CATH superfamily
3AEFC 3AE6C 1ZP0D 4YT0C 2ACZD 3AE2C 4DHJA 1TFFA 2B76D 3AE9C 3VR9D 3VR8D 3ABVC 2ZFYA 3P4PC 3AEDC 3P4SC 3AE8C 2WDRC 2WDVC 4YTPD 1L0VD 2WP9D 1KFYD 3CIRD 1ZOYD 5C3JD 3SFED 3AE5D 2WU5D 1NEKC 3AE1C 3AEFD 4YXDC 3AE6D 1YQ4D 3AECC 2WS3D 3AE9D 3AEGC 3VRAD 2WU2C 3P4PD 3AEDD 1YQ3C 2H89C 2WDVD 4DHIB 4YTMC 1QLBC 4YSYD 4LDTA 1KF6C 3AEAC 2WQYC 2WDQC 2BS4C 3P4QD 4YSZC 3AE1D 1NEKD 3VONA 4YTNC 1E7PC 2FBWC 4YT0D 3AEEC 3VRBC 3AE2D 3AECD 3AE3C 3AE4C 3AE7C 3ABVD 2WU2D 2H88C 3P4RC 1NENC 5C2TC 1L0VC 2H89D 4DDIA 3P4SD 4KX6C 3AE8D 2WDRD 4YTMD 3SFDC 1KFYC 4YSXC 3AEBC 5C3JC 1ZOYC 1KF6D 3AEAD 3AE5C 2WU5C 4YSZD 1YQ4C 1ZP0C 4I6LA 4YTND 4YXDD 2ACZC 2FBWD 2BS3C 2WS3C 2B76C 3AEED 4FJVA 3VR9C 3VR8C 3VRBD 3AE3D 3VRAC 3AE4D 3AE7D 3AEGD 2H88D 3P4RD 1NEND 5C2TD 4YTPC 1YQ3D 4KX6D 4YSYC 2WP9C 3SFDD 4YSXD 3AEBD 3CIRC 3P4QC 4DDGA 2WQYD 3SFEC 2BS2C 2WDQD 4DHZA
chains in the Genus database with same CATH topology
3AEFC 3AE6C 1ZP0D 4YT0C 2ACZD 3AE2C 2B76D 3AE9C 3VR9D 3VR8D 3ABVC 3P4PC 3AEDC 3P4SC 3AE8C 2WDRC 2WDVC 4YTPD 1L0VD 2WP9D 1KFYD 3CIRD 1ZOYD 5C3JD 3SFED 3AE5D 2WU5D 1NEKC 3AE1C 3AEFD 4YXDC 3AE6D 1YQ4D 3AECC 2WS3D 3AE9D 3AEGC 3VRAD 2WU2C 3P4PD 3AEDD 1YQ3C 2H89C 2WDVD 4YTMC 1QLBC 4YSYD 1KF6C 3AEAC 2WQYC 2WDQC 2BS4C 3P4QD 4YSZC 3AE1D 1NEKD 4YTNC 1E7PC 2FBWC 4YT0D 3AEEC 3VRBC 3AE2D 3AECD 3AE3C 3AE4C 3AE7C 3ABVD 2WU2D 2H88C 3P4RC 1NENC 5C2TC 1L0VC 2H89D 3P4SD 4KX6C 3AE8D 2WDRD 4YTMD 3SFDC 1KFYC 4YSXC 3AEBC 5C3JC 1ZOYC 1KF6D 3AEAD 3AE5C 2WU5C 4YSZD 1YQ4C 1ZP0C 4YTND 4YXDD 2ACZC 2FBWD 2BS3C 2WS3C 2B76C 3AEED 3VR9C 3VR8C 3VRAC 3VRBD 3AE3D 3AE4D 3AE7D 3AEGD 2H88D 3P4RD 1NEND 5C2TD 4YTPC 1YQ3D 4KX6D 4YSYC 2WP9C 3SFDD 4YSXD 3AEBD 3CIRC 3P4QC 2WQYD 3SFEC 2BS2C 2WDQD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AEF C;  3AE6 C;  1ZP0 D;  4YT0 C;  2ACZ D;  3AE2 C;  2B76 D;  3AE9 C;  3VR9 D;  3VR8 D;  3ABV C;  3P4P C;  3AED C;  3P4S C;  3AE8 C;  2WDR C;  2WDV C;  4YTP D;  1L0V D;  2WP9 D;  1KFY D;  3CIR D;  1ZOY D;  5C3J D;  3SFE D;  3AE5 D;  2WU5 D;  1NEK C;  3AE1 C;  3AEF D;  4YXD C;  3AE6 D;  1YQ4 D;  3AEC C;  2WS3 D;  3AE9 D;  3AEG C;  3VRA D;  2WU2 C;  3P4P D;  3AED D;  1YQ3 C;  2H89 C;  2WDV D;  4YTM C;  1QLB C;  4YSY D;  1KF6 C;  3AEA C;  2WQY C;  2WDQ C;  2BS4 C;  3P4Q D;  4YSZ C;  3AE1 D;  1NEK D;  4YTN C;  1E7P C;  2FBW C;  4YT0 D;  3AEE C;  3VRB C;  3AE2 D;  3AEC D;  3AE3 C;  3AE4 C;  3AE7 C;  3ABV D;  2WU2 D;  2H88 C;  3P4R C;  1NEN C;  5C2T C;  1L0V C;  2H89 D;  3P4S D;  4KX6 C;  3AE8 D;  2WDR D;  4YTM D;  3SFD C;  1KFY C;  4YSX C;  3AEB C;  5C3J C;  1ZOY C;  1KF6 D;  3AEA D;  3AE5 C;  2WU5 C;  4YSZ D;  1YQ4 C;  1ZP0 C;  4YTN D;  4YXD D;  2ACZ C;  2FBW D;  2BS3 C;  2WS3 C;  2B76 C;  3AEE D;  3VR9 C;  3VR8 C;  3VRA C;  3VRB D;  3AE3 D;  3AE4 D;  3AE7 D;  3AEG D;  2H88 D;  3P4R D;  1NEN D;  5C2T D;  4YTP C;  1YQ3 D;  4KX6 D;  4YSY C;  2WP9 C;  3SFD D;  4YSX D;  3AEB D;  3CIR C;  3P4Q C;  2WQY D;  3SFE C;  2BS2 C;  2WDQ D; 
#chains in the Genus database with same CATH topology
 3AEF C;  3AE6 C;  1ZP0 D;  4YT0 C;  2ACZ D;  3AE2 C;  4DHJ A;  1TFF A;  2B76 D;  3AE9 C;  3VR9 D;  3VR8 D;  3ABV C;  2ZFY A;  3P4P C;  3AED C;  3P4S C;  3AE8 C;  2WDR C;  2WDV C;  4YTP D;  1L0V D;  2WP9 D;  1KFY D;  3CIR D;  1ZOY D;  5C3J D;  3SFE D;  3AE5 D;  2WU5 D;  1NEK C;  3AE1 C;  3AEF D;  4YXD C;  3AE6 D;  1YQ4 D;  3AEC C;  2WS3 D;  3AE9 D;  3AEG C;  3VRA D;  2WU2 C;  3P4P D;  3AED D;  1YQ3 C;  2H89 C;  2WDV D;  4DHI B;  4YTM C;  1QLB C;  4YSY D;  4LDT A;  1KF6 C;  3AEA C;  2WQY C;  2WDQ C;  2BS4 C;  3P4Q D;  4YSZ C;  3AE1 D;  1NEK D;  3VON A;  4YTN C;  1E7P C;  2FBW C;  4YT0 D;  3AEE C;  3VRB C;  3AE2 D;  3AEC D;  3AE3 C;  3AE4 C;  3AE7 C;  3ABV D;  2WU2 D;  2H88 C;  3P4R C;  1NEN C;  5C2T C;  1L0V C;  2H89 D;  4DDI A;  3P4S D;  4KX6 C;  3AE8 D;  2WDR D;  4YTM D;  3SFD C;  1KFY C;  4YSX C;  3AEB C;  5C3J C;  1ZOY C;  1KF6 D;  3AEA D;  3AE5 C;  2WU5 C;  4YSZ D;  1YQ4 C;  1ZP0 C;  4I6L A;  4YTN D;  4YXD D;  2ACZ C;  2FBW D;  2BS3 C;  2WS3 C;  2B76 C;  3AEE D;  4FJV A;  3VR9 C;  3VR8 C;  3VRB D;  3AE3 D;  3VRA C;  3AE4 D;  3AE7 D;  3AEG D;  2H88 D;  3P4R D;  1NEN D;  5C2T D;  4YTP C;  1YQ3 D;  4KX6 D;  4YSY C;  2WP9 C;  3SFD D;  4YSX D;  3AEB D;  3CIR C;  3P4Q C;  4DDG A;  2WQY D;  3SFE C;  2BS2 C;  2WDQ D;  4DHZ A; 
#chains in the Genus database with same CATH homology
 3AEF C;  3AE6 C;  1ZP0 D;  4YT0 C;  2ACZ D;  3AE2 C;  2B76 D;  3AE9 C;  3VR9 D;  3VR8 D;  3ABV C;  3P4P C;  3AED C;  3P4S C;  3AE8 C;  2WDR C;  2WDV C;  4YTP D;  1L0V D;  2WP9 D;  1KFY D;  3CIR D;  1ZOY D;  5C3J D;  3SFE D;  3AE5 D;  2WU5 D;  1NEK C;  3AE1 C;  3AEF D;  4YXD C;  3AE6 D;  1YQ4 D;  3AEC C;  2WS3 D;  3AE9 D;  3AEG C;  3VRA D;  2WU2 C;  3P4P D;  3AED D;  1YQ3 C;  2H89 C;  2WDV D;  4YTM C;  1QLB C;  4YSY D;  1KF6 C;  3AEA C;  2WQY C;  2WDQ C;  2BS4 C;  3P4Q D;  4YSZ C;  3AE1 D;  1NEK D;  4YTN C;  1E7P C;  2FBW C;  4YT0 D;  3AEE C;  3VRB C;  3AE2 D;  3AEC D;  3AE3 C;  3AE4 C;  3AE7 C;  3ABV D;  2WU2 D;  2H88 C;  3P4R C;  1NEN C;  5C2T C;  1L0V C;  2H89 D;  3P4S D;  4KX6 C;  3AE8 D;  2WDR D;  4YTM D;  3SFD C;  1KFY C;  4YSX C;  3AEB C;  5C3J C;  1ZOY C;  1KF6 D;  3AEA D;  3AE5 C;  2WU5 C;  4YSZ D;  1YQ4 C;  1ZP0 C;  4YTN D;  4YXD D;  2ACZ C;  2FBW D;  2BS3 C;  2WS3 C;  2B76 C;  3AEE D;  3VR9 C;  3VR8 C;  3VRA C;  3VRB D;  3AE3 D;  3AE4 D;  3AE7 D;  3AEG D;  2H88 D;  3P4R D;  1NEN D;  5C2T D;  4YTP C;  1YQ3 D;  4KX6 D;  4YSY C;  2WP9 C;  3SFD D;  4YSX D;  3AEB D;  3CIR C;  3P4Q C;  2WQY D;  3SFE C;  2BS2 C;  2WDQ D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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