1NEKD

Complex ii (succinate dehydrogenase) from e. coli with ubiquinone bound
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
113
structure length
113
Chain Sequence
SNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase/electron transport
molecule keywords Succinate dehydrogenase flavoprotein subunit
publication title Architecture of succinate dehydrogenase and reactive oxygen species generation.
pubmed doi rcsb
source organism Escherichia coli
total genus 47
structure length 113
sequence length 113
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1nekD01
3SFDC 4YTND 1YQ4D 1ZOYC 2WU5D 4YTPD 2WDQC 3AE3D 3AE5C 3AE6D 2H88D 2ACZC 3AE3C 3AECC 2WDVD 2H89D 2H88C 3SFED 1NEKD 3P4QC 1NENC 3P4PD 3VR8D 3ABVD 2H89C 4YSZC 1L0VC 1YQ3D 3AE9C 4KX6D 3AEGC 2B76D 1E7PC 3P4RC 2FBWD 4YXDD 4YSXD 2WDRD 4YTNC 4YXDC 1YQ4C 4YSXC 2BS2C 2WU5C 4YTPC 3VRBD 3AE8D 1KFYD 3AE1D 3AE6C 2WU2D 3VRBC 2BS4C 5C2TD 1KF6D 2WDVC 3AE2D 3SFEC 1NEKC 3VR9D 5C2TC 1KF6C 3AEED 3P4PC 3VR8C 3ABVC 3AEFD 1YQ3C 2WS3D 4KX6C 2B76C 3AEAD 3VRAD 2WS3C 4YTMD 2FBWC 3AE7D 3AEBD 4YSYD 2WDRC 3AE4D 1ZP0D 1ZP0C 3AE8C 1KFYC 3AE1C 2WU2C 2BS3C 3AE2C 2WP9D 3VR9C 3AEEC 2WDQD 2WP9C 3AEDD 3AEFC 3AE5D 2ACZD 3P4SD 3AEDC 3AECD 5C3JD 3AEAC 3VRAC 3CIRD 3P4QD 3P4SC 1NEND 5C3JC 4YSZD 3CIRC 1L0VD 4YT0D 4YTMC 3AE7C 3AEBC 3AE9D 4YSYC 4YT0C 2WQYD 3AEGD 3AE4C 1QLBC 2WQYC 3SFDD 3P4RD 1ZOYD
chains in the Genus database with same CATH superfamily
3SFDC 4YTND 1YQ4D 1ZOYC 2WU5D 4YTPD 4DDIA 2WDQC 3AE3D 3AE5C 3AE6D 2H88D 2ACZC 3AE3C 3AECC 2WDVD 2H89D 2H88C 3SFED 1NEKD 3P4QC 4DHJA 1NENC 3P4PD 3VR8D 3ABVD 2H89C 4YSZC 1L0VC 4I6LA 1YQ3D 3AE9C 4KX6D 4LDTA 3AEGC 2B76D 2ZFYA 1E7PC 3P4RC 2FBWD 4YXDD 4YSXD 2WDRD 4YTNC 4YXDC 1YQ4C 3VONA 4YSXC 2BS2C 2WU5C 4YTPC 3VRBD 3AE8D 1KFYD 3AE1D 3AE6C 2WU2D 3VRBC 2BS4C 4DHZA 5C2TD 1KF6D 2WDVC 3AE2D 3SFEC 1NEKC 3VR9D 5C2TC 1KF6C 3AEED 3P4PC 3VR8C 3ABVC 4DDGA 3AEFD 1YQ3C 2WS3D 4KX6C 2B76C 3AEAD 3VRAD 2WS3C 4YTMD 2FBWC 3AE7D 3AEBD 4YSYD 2WDRC 3AE4D 1ZP0D 1ZP0C 3AE8C 1KFYC 3AE1C 2WU2C 4FJVA 2BS3C 3AE2C 2WP9D 3VR9C 4DHIB 3AEEC 2WDQD 2WP9C 3AEDD 3AEFC 3AE5D 2ACZD 3P4SD 3AEDC 3AECD 5C3JD 3AEAC 3VRAC 3CIRD 3P4QD 3P4SC 1NEND 5C3JC 4YSZD 3CIRC 1TFFA 1L0VD 4YT0D 4YTMC 3AE7C 3AEBC 3AE9D 4YSYC 4YT0C 2WQYD 3AEGD 3AE4C 1QLBC 2WQYC 3SFDD 3P4RD 1ZOYD
chains in the Genus database with same CATH topology
3SFDC 4YTND 1YQ4D 1ZOYC 2WU5D 4YTPD 2WDQC 3AE3D 3AE5C 3AE6D 2H88D 2ACZC 3AE3C 3AECC 2WDVD 2H89D 2H88C 3SFED 1NEKD 3P4QC 1NENC 3P4PD 3VR8D 3ABVD 2H89C 4YSZC 1L0VC 1YQ3D 3AE9C 4KX6D 3AEGC 2B76D 1E7PC 3P4RC 2FBWD 4YXDD 4YSXD 2WDRD 4YTNC 4YXDC 1YQ4C 4YSXC 2BS2C 2WU5C 4YTPC 3VRBD 3AE8D 1KFYD 3AE1D 3AE6C 2WU2D 3VRBC 2BS4C 5C2TD 1KF6D 2WDVC 3AE2D 3SFEC 1NEKC 3VR9D 5C2TC 1KF6C 3AEED 3P4PC 3VR8C 3ABVC 3AEFD 1YQ3C 2WS3D 4KX6C 2B76C 3AEAD 3VRAD 2WS3C 4YTMD 2FBWC 3AE7D 3AEBD 4YSYD 2WDRC 3AE4D 1ZP0D 1ZP0C 3AE8C 1KFYC 3AE1C 2WU2C 2BS3C 3AE2C 2WP9D 3VR9C 3AEEC 2WDQD 2WP9C 3AEDD 3AEFC 3AE5D 2ACZD 3P4SD 3AEDC 3AECD 5C3JD 3AEAC 3VRAC 3CIRD 3P4QD 3P4SC 1NEND 5C3JC 4YSZD 3CIRC 1L0VD 4YT0D 4YTMC 3AE7C 3AEBC 3AE9D 4YSYC 4YT0C 2WQYD 3AEGD 3AE4C 1QLBC 2WQYC 3SFDD 3P4RD 1ZOYD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SFD C;  4YTN D;  1YQ4 D;  1ZOY C;  2WU5 D;  4YTP D;  2WDQ C;  3AE3 D;  3AE5 C;  3AE6 D;  2H88 D;  2ACZ C;  3AE3 C;  3AEC C;  2WDV D;  2H89 D;  2H88 C;  3SFE D;  1NEK D;  3P4Q C;  1NEN C;  3P4P D;  3VR8 D;  3ABV D;  2H89 C;  4YSZ C;  1L0V C;  1YQ3 D;  3AE9 C;  4KX6 D;  3AEG C;  2B76 D;  1E7P C;  3P4R C;  2FBW D;  4YXD D;  4YSX D;  2WDR D;  4YTN C;  4YXD C;  1YQ4 C;  4YSX C;  2BS2 C;  2WU5 C;  4YTP C;  3VRB D;  3AE8 D;  1KFY D;  3AE1 D;  3AE6 C;  2WU2 D;  3VRB C;  2BS4 C;  5C2T D;  1KF6 D;  2WDV C;  3AE2 D;  3SFE C;  1NEK C;  3VR9 D;  5C2T C;  1KF6 C;  3AEE D;  3P4P C;  3VR8 C;  3ABV C;  3AEF D;  1YQ3 C;  2WS3 D;  4KX6 C;  2B76 C;  3AEA D;  3VRA D;  2WS3 C;  4YTM D;  2FBW C;  3AE7 D;  3AEB D;  4YSY D;  2WDR C;  3AE4 D;  1ZP0 D;  1ZP0 C;  3AE8 C;  1KFY C;  3AE1 C;  2WU2 C;  2BS3 C;  3AE2 C;  2WP9 D;  3VR9 C;  3AEE C;  2WDQ D;  2WP9 C;  3AED D;  3AEF C;  3AE5 D;  2ACZ D;  3P4S D;  3AED C;  3AEC D;  5C3J D;  3AEA C;  3VRA C;  3CIR D;  3P4Q D;  3P4S C;  1NEN D;  5C3J C;  4YSZ D;  3CIR C;  1L0V D;  4YT0 D;  4YTM C;  3AE7 C;  3AEB C;  3AE9 D;  4YSY C;  4YT0 C;  2WQY D;  3AEG D;  3AE4 C;  1QLB C;  2WQY C;  3SFD D;  3P4R D;  1ZOY D; 
#chains in the Genus database with same CATH topology
 3SFD C;  4YTN D;  1YQ4 D;  1ZOY C;  2WU5 D;  4YTP D;  4DDI A;  2WDQ C;  3AE3 D;  3AE5 C;  3AE6 D;  2H88 D;  2ACZ C;  3AE3 C;  3AEC C;  2WDV D;  2H89 D;  2H88 C;  3SFE D;  1NEK D;  3P4Q C;  4DHJ A;  1NEN C;  3P4P D;  3VR8 D;  3ABV D;  2H89 C;  4YSZ C;  1L0V C;  4I6L A;  1YQ3 D;  3AE9 C;  4KX6 D;  4LDT A;  3AEG C;  2B76 D;  2ZFY A;  1E7P C;  3P4R C;  2FBW D;  4YXD D;  4YSX D;  2WDR D;  4YTN C;  4YXD C;  1YQ4 C;  3VON A;  4YSX C;  2BS2 C;  2WU5 C;  4YTP C;  3VRB D;  3AE8 D;  1KFY D;  3AE1 D;  3AE6 C;  2WU2 D;  3VRB C;  2BS4 C;  4DHZ A;  5C2T D;  1KF6 D;  2WDV C;  3AE2 D;  3SFE C;  1NEK C;  3VR9 D;  5C2T C;  1KF6 C;  3AEE D;  3P4P C;  3VR8 C;  3ABV C;  4DDG A;  3AEF D;  1YQ3 C;  2WS3 D;  4KX6 C;  2B76 C;  3AEA D;  3VRA D;  2WS3 C;  4YTM D;  2FBW C;  3AE7 D;  3AEB D;  4YSY D;  2WDR C;  3AE4 D;  1ZP0 D;  1ZP0 C;  3AE8 C;  1KFY C;  3AE1 C;  2WU2 C;  4FJV A;  2BS3 C;  3AE2 C;  2WP9 D;  3VR9 C;  4DHI B;  3AEE C;  2WDQ D;  2WP9 C;  3AED D;  3AEF C;  3AE5 D;  2ACZ D;  3P4S D;  3AED C;  3AEC D;  5C3J D;  3AEA C;  3VRA C;  3CIR D;  3P4Q D;  3P4S C;  1NEN D;  5C3J C;  4YSZ D;  3CIR C;  1TFF A;  1L0V D;  4YT0 D;  4YTM C;  3AE7 C;  3AEB C;  3AE9 D;  4YSY C;  4YT0 C;  2WQY D;  3AEG D;  3AE4 C;  1QLB C;  2WQY C;  3SFD D;  3P4R D;  1ZOY D; 
#chains in the Genus database with same CATH homology
 3SFD C;  4YTN D;  1YQ4 D;  1ZOY C;  2WU5 D;  4YTP D;  2WDQ C;  3AE3 D;  3AE5 C;  3AE6 D;  2H88 D;  2ACZ C;  3AE3 C;  3AEC C;  2WDV D;  2H89 D;  2H88 C;  3SFE D;  1NEK D;  3P4Q C;  1NEN C;  3P4P D;  3VR8 D;  3ABV D;  2H89 C;  4YSZ C;  1L0V C;  1YQ3 D;  3AE9 C;  4KX6 D;  3AEG C;  2B76 D;  1E7P C;  3P4R C;  2FBW D;  4YXD D;  4YSX D;  2WDR D;  4YTN C;  4YXD C;  1YQ4 C;  4YSX C;  2BS2 C;  2WU5 C;  4YTP C;  3VRB D;  3AE8 D;  1KFY D;  3AE1 D;  3AE6 C;  2WU2 D;  3VRB C;  2BS4 C;  5C2T D;  1KF6 D;  2WDV C;  3AE2 D;  3SFE C;  1NEK C;  3VR9 D;  5C2T C;  1KF6 C;  3AEE D;  3P4P C;  3VR8 C;  3ABV C;  3AEF D;  1YQ3 C;  2WS3 D;  4KX6 C;  2B76 C;  3AEA D;  3VRA D;  2WS3 C;  4YTM D;  2FBW C;  3AE7 D;  3AEB D;  4YSY D;  2WDR C;  3AE4 D;  1ZP0 D;  1ZP0 C;  3AE8 C;  1KFY C;  3AE1 C;  2WU2 C;  2BS3 C;  3AE2 C;  2WP9 D;  3VR9 C;  3AEE C;  2WDQ D;  2WP9 C;  3AED D;  3AEF C;  3AE5 D;  2ACZ D;  3P4S D;  3AED C;  3AEC D;  5C3J D;  3AEA C;  3VRA C;  3CIR D;  3P4Q D;  3P4S C;  1NEN D;  5C3J C;  4YSZ D;  3CIR C;  1L0V D;  4YT0 D;  4YTM C;  3AE7 C;  3AEB C;  3AE9 D;  4YSY C;  4YT0 C;  2WQY D;  3AEG D;  3AE4 C;  1QLB C;  2WQY C;  3SFD D;  3P4R D;  1ZOY D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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