1NENC

Complex ii (succinate dehydrogenase) from e. coli with dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
129
structure length
129
Chain Sequence
MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Architecture of succinate dehydrogenase and reactive oxygen species generation
pubmed doi rcsb
molecule tags Oxidoreductase/electron transport
source organism Escherichia coli
molecule keywords Succinate dehydrogenase flavoprotein subunit
total genus 50
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1nenC00
1YQ3D 1NENC 5C2TC 3AE3C 2H89D 1KF6D 3AE2D 2WDQD 3VR8D 3AEFD 3P4PD 2BS3C 3AEDD 2H89C 2WDQC 2WQYC 1YQ4D 1QLBC 3VR8C 4YSZD 1NEND 5C2TD 3AE3D 2WDVC 3AE8C 3SFDC 1YQ4C 4YSZC 4YSYC 2ACZD 2WS3C 2WQYD 3AE4C 3AE1D 4KX6C 2WDVD 3VR9C 2ACZC 3P4RC 3SFEC 2WU5D 3AE8D 3CIRC 3AE5C 3SFDD 3P4QD 1ZP0C 4YSYD 3AE1C 1E7PC 2WS3D 5C3JC 3AEAC 2BS2C 3AEEC 4YTMD 3AE4D 2WU5C 4KX6D 3P4QC 2BS4C 3VR9D 3P4SC 3P4RD 1ZOYC 2WDRD 3SFED 3CIRD 3AE5D 4YSXD 2WU2D 1ZP0D 4YTMC 5C3JD 3AE6C 1L0VD 3AEAD 1NEKC 4YTPC 3AEBC 2WDRC 3AEED 4YSXC 2WU2C 3ABVD 1KFYC 3P4SD 3AE7D 1ZOYD 3AECC 3AE9C 1L0VC 3AEGC 2FBWC 4YT0D 2WP9C 3VRBD 2B76D 3AE6D 3ABVC 4YXDD 1NEKD 4YTNC 3AE7C 4YTPD 3VRAD 3AEBD 1YQ3C 1KFYD 1KF6C 3AE2C 4YT0C 2H88D 3VRBC 3AE9D 3AECD 2B76C 3AEGD 4YXDC 2FBWD 3AEFC 3VRAC 2WP9D 3P4PC 3AEDC 4YTND 2H88C
chains in the Genus database with same CATH superfamily
2ZFYA 1YQ3D 1NENC 5C2TC 3AE3C 2H89D 1KF6D 3AE2D 2WDQD 3VR8D 3AEFD 3P4PD 2BS3C 3AEDD 4FJVA 4DHZA 2H89C 2WDQC 2WQYC 1YQ4D 1QLBC 3VR8C 4YSZD 1NEND 5C2TD 3AE3D 2WDVC 3AE8C 3SFDC 1YQ4C 4YSZC 4YSYC 2ACZD 2WS3C 3VONA 2WQYD 3AE4C 3AE1D 4KX6C 2WDVD 3VR9C 2ACZC 1TFFA 3P4RC 4DDIA 3SFEC 2WU5D 3AE8D 3CIRC 3AE5C 3SFDD 3P4QD 1ZP0C 4YSYD 3AE1C 1E7PC 2WS3D 5C3JC 3AEAC 2BS2C 3AEEC 4YTMD 3AE4D 2WU5C 4DHIB 4KX6D 3P4QC 2BS4C 3VR9D 3P4SC 3P4RD 1ZOYC 2WDRD 3SFED 3CIRD 3AE5D 4YSXD 2WU2D 1ZP0D 4LDTA 4YTMC 5C3JD 3AE6C 1L0VD 3AEAD 1NEKC 4YTPC 3AEBC 2WDRC 3AEED 4YSXC 2WU2C 3ABVD 1KFYC 3P4SD 3AE7D 1ZOYD 3AECC 3AE9C 1L0VC 3AEGC 2FBWC 4YT0D 2WP9C 4I6LA 3VRBD 4DDGA 2B76D 3AE6D 3ABVC 4YXDD 1NEKD 4YTNC 3AE7C 4YTPD 3VRAD 3AEBD 1YQ3C 1KFYD 1KF6C 3AE2C 4YT0C 2H88D 3VRBC 3AE9D 3AECD 2B76C 3AEGD 4YXDC 2FBWD 3AEFC 3VRAC 2WP9D 3P4PC 3AEDC 4DHJA 4YTND 2H88C
chains in the Genus database with same CATH topology
1YQ3D 1NENC 5C2TC 3AE3C 2H89D 1KF6D 3AE2D 2WDQD 3VR8D 3AEFD 3P4PD 2BS3C 3AEDD 2H89C 2WDQC 2WQYC 1YQ4D 1QLBC 3VR8C 4YSZD 1NEND 5C2TD 3AE3D 2WDVC 3AE8C 3SFDC 1YQ4C 4YSZC 4YSYC 2ACZD 2WS3C 2WQYD 3AE4C 3AE1D 4KX6C 2WDVD 3VR9C 2ACZC 3P4RC 3SFEC 2WU5D 3AE8D 3CIRC 3AE5C 3SFDD 3P4QD 1ZP0C 4YSYD 3AE1C 1E7PC 2WS3D 5C3JC 3AEAC 2BS2C 3AEEC 4YTMD 3AE4D 2WU5C 4KX6D 3P4QC 2BS4C 3VR9D 3P4SC 3P4RD 1ZOYC 2WDRD 3SFED 3CIRD 3AE5D 4YSXD 2WU2D 1ZP0D 4YTMC 5C3JD 3AE6C 1L0VD 3AEAD 1NEKC 4YTPC 3AEBC 2WDRC 3AEED 4YSXC 2WU2C 3ABVD 1KFYC 3P4SD 3AE7D 1ZOYD 3AECC 3AE9C 1L0VC 3AEGC 2FBWC 4YT0D 2WP9C 3VRBD 2B76D 3AE6D 3ABVC 4YXDD 1NEKD 4YTNC 3AE7C 4YTPD 3VRAD 3AEBD 1YQ3C 1KFYD 1KF6C 3AE2C 4YT0C 2H88D 3VRBC 3AE9D 3AECD 2B76C 3AEGD 4YXDC 2FBWD 3AEFC 3VRAC 2WP9D 3P4PC 3AEDC 4YTND 2H88C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YQ3 D;  1NEN C;  5C2T C;  3AE3 C;  2H89 D;  1KF6 D;  3AE2 D;  2WDQ D;  3VR8 D;  3AEF D;  3P4P D;  2BS3 C;  3AED D;  2H89 C;  2WDQ C;  2WQY C;  1YQ4 D;  1QLB C;  3VR8 C;  4YSZ D;  1NEN D;  5C2T D;  3AE3 D;  2WDV C;  3AE8 C;  3SFD C;  1YQ4 C;  4YSZ C;  4YSY C;  2ACZ D;  2WS3 C;  2WQY D;  3AE4 C;  3AE1 D;  4KX6 C;  2WDV D;  3VR9 C;  2ACZ C;  3P4R C;  3SFE C;  2WU5 D;  3AE8 D;  3CIR C;  3AE5 C;  3SFD D;  3P4Q D;  1ZP0 C;  4YSY D;  3AE1 C;  1E7P C;  2WS3 D;  5C3J C;  3AEA C;  2BS2 C;  3AEE C;  4YTM D;  3AE4 D;  2WU5 C;  4KX6 D;  3P4Q C;  2BS4 C;  3VR9 D;  3P4S C;  3P4R D;  1ZOY C;  2WDR D;  3SFE D;  3CIR D;  3AE5 D;  4YSX D;  2WU2 D;  1ZP0 D;  4YTM C;  5C3J D;  3AE6 C;  1L0V D;  3AEA D;  1NEK C;  4YTP C;  3AEB C;  2WDR C;  3AEE D;  4YSX C;  2WU2 C;  3ABV D;  1KFY C;  3P4S D;  3AE7 D;  1ZOY D;  3AEC C;  3AE9 C;  1L0V C;  3AEG C;  2FBW C;  4YT0 D;  2WP9 C;  3VRB D;  2B76 D;  3AE6 D;  3ABV C;  4YXD D;  1NEK D;  4YTN C;  3AE7 C;  4YTP D;  3VRA D;  3AEB D;  1YQ3 C;  1KFY D;  1KF6 C;  3AE2 C;  4YT0 C;  2H88 D;  3VRB C;  3AE9 D;  3AEC D;  2B76 C;  3AEG D;  4YXD C;  2FBW D;  3AEF C;  3VRA C;  2WP9 D;  3P4P C;  3AED C;  4YTN D;  2H88 C; 
#chains in the Genus database with same CATH topology
 2ZFY A;  1YQ3 D;  1NEN C;  5C2T C;  3AE3 C;  2H89 D;  1KF6 D;  3AE2 D;  2WDQ D;  3VR8 D;  3AEF D;  3P4P D;  2BS3 C;  3AED D;  4FJV A;  4DHZ A;  2H89 C;  2WDQ C;  2WQY C;  1YQ4 D;  1QLB C;  3VR8 C;  4YSZ D;  1NEN D;  5C2T D;  3AE3 D;  2WDV C;  3AE8 C;  3SFD C;  1YQ4 C;  4YSZ C;  4YSY C;  2ACZ D;  2WS3 C;  3VON A;  2WQY D;  3AE4 C;  3AE1 D;  4KX6 C;  2WDV D;  3VR9 C;  2ACZ C;  1TFF A;  3P4R C;  4DDI A;  3SFE C;  2WU5 D;  3AE8 D;  3CIR C;  3AE5 C;  3SFD D;  3P4Q D;  1ZP0 C;  4YSY D;  3AE1 C;  1E7P C;  2WS3 D;  5C3J C;  3AEA C;  2BS2 C;  3AEE C;  4YTM D;  3AE4 D;  2WU5 C;  4DHI B;  4KX6 D;  3P4Q C;  2BS4 C;  3VR9 D;  3P4S C;  3P4R D;  1ZOY C;  2WDR D;  3SFE D;  3CIR D;  3AE5 D;  4YSX D;  2WU2 D;  1ZP0 D;  4LDT A;  4YTM C;  5C3J D;  3AE6 C;  1L0V D;  3AEA D;  1NEK C;  4YTP C;  3AEB C;  2WDR C;  3AEE D;  4YSX C;  2WU2 C;  3ABV D;  1KFY C;  3P4S D;  3AE7 D;  1ZOY D;  3AEC C;  3AE9 C;  1L0V C;  3AEG C;  2FBW C;  4YT0 D;  2WP9 C;  4I6L A;  3VRB D;  4DDG A;  2B76 D;  3AE6 D;  3ABV C;  4YXD D;  1NEK D;  4YTN C;  3AE7 C;  4YTP D;  3VRA D;  3AEB D;  1YQ3 C;  1KFY D;  1KF6 C;  3AE2 C;  4YT0 C;  2H88 D;  3VRB C;  3AE9 D;  3AEC D;  2B76 C;  3AEG D;  4YXD C;  2FBW D;  3AEF C;  3VRA C;  2WP9 D;  3P4P C;  3AED C;  4DHJ A;  4YTN D;  2H88 C; 
#chains in the Genus database with same CATH homology
 1YQ3 D;  1NEN C;  5C2T C;  3AE3 C;  2H89 D;  1KF6 D;  3AE2 D;  2WDQ D;  3VR8 D;  3AEF D;  3P4P D;  2BS3 C;  3AED D;  2H89 C;  2WDQ C;  2WQY C;  1YQ4 D;  1QLB C;  3VR8 C;  4YSZ D;  1NEN D;  5C2T D;  3AE3 D;  2WDV C;  3AE8 C;  3SFD C;  1YQ4 C;  4YSZ C;  4YSY C;  2ACZ D;  2WS3 C;  2WQY D;  3AE4 C;  3AE1 D;  4KX6 C;  2WDV D;  3VR9 C;  2ACZ C;  3P4R C;  3SFE C;  2WU5 D;  3AE8 D;  3CIR C;  3AE5 C;  3SFD D;  3P4Q D;  1ZP0 C;  4YSY D;  3AE1 C;  1E7P C;  2WS3 D;  5C3J C;  3AEA C;  2BS2 C;  3AEE C;  4YTM D;  3AE4 D;  2WU5 C;  4KX6 D;  3P4Q C;  2BS4 C;  3VR9 D;  3P4S C;  3P4R D;  1ZOY C;  2WDR D;  3SFE D;  3CIR D;  3AE5 D;  4YSX D;  2WU2 D;  1ZP0 D;  4YTM C;  5C3J D;  3AE6 C;  1L0V D;  3AEA D;  1NEK C;  4YTP C;  3AEB C;  2WDR C;  3AEE D;  4YSX C;  2WU2 C;  3ABV D;  1KFY C;  3P4S D;  3AE7 D;  1ZOY D;  3AEC C;  3AE9 C;  1L0V C;  3AEG C;  2FBW C;  4YT0 D;  2WP9 C;  3VRB D;  2B76 D;  3AE6 D;  3ABV C;  4YXD D;  1NEK D;  4YTN C;  3AE7 C;  4YTP D;  3VRA D;  3AEB D;  1YQ3 C;  1KFY D;  1KF6 C;  3AE2 C;  4YT0 C;  2H88 D;  3VRB C;  3AE9 D;  3AEC D;  2B76 C;  3AEG D;  4YXD C;  2FBW D;  3AEF C;  3VRA C;  2WP9 D;  3P4P C;  3AED C;  4YTN D;  2H88 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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