1NENC

Complex ii (succinate dehydrogenase) from e. coli with dinitrophenol-17 inhibitor co-crystallized at the ubiquinone binding site
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
129
structure length
129
Chain Sequence
b'MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Succinate dehydrogenase flavoprotein subunit
publication title Architecture of succinate dehydrogenase and reactive oxygen species generation
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase/electron transport
total genus 50
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01127 Sdh_cyt Succinate dehydrogenase/Fumarate reductase transmembrane subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1nenC00
3AE2D 3P4SD 3P4PC 2WU2D 4YXDC 4YSXD 1NEND 4YT0D 1ZP0D 3AEBD 3AE9C 3AE7C 3P4RD 2WDRD 1KF6D 3AE6C 3AECD 3P4PD 4YXDD 3AE9D 3AE7D 2WDQC 3AE2C 2WU2C 4YSZC 4YSXC 3AE8D 4YSYC 2WQYD 2BS3C 1L0VD 1NEKC 1YQ3C 2WDRC 2WDQD 3AEFC 3AE5D 3AECC 4YSZD 4YSYD 4YTMD 1NEKD 1YQ3D 3SFDC 3VR8C 3AEFD 3AE8C 1ZOYD 2WQYC 1L0VC 4KX6C 2WS3D 3AE5C 5C3JC 3SFDD 2BS2C 3VR8D 4YTMC 4KX6D 3AE3C 5C2TD 5C3JD 3VRAC 2ACZC 1ZOYC 2H89C 3SFEC 1QLBC 2WS3C 2WDVC 3AE3D 3AE1D 4YTND 1E7PC 2BS4C 2H88D 3VRAD 2ACZD 2H89D 5C2TC 3SFED 1KFYC 4YTPC 2WDVD 3CIRD 3P4QC 3AEEC 3AEDD 3VR9C 3ABVC 1KFYD 2FBWC 3AE1C 3AEAC 4YTNC 4YTPD 3P4QD 2H88C 3AEED 3VRBD 2WP9C 3AEGD 3AE4C 2WU5C 2B76C 3VR9D 1YQ4C 3ABVD 3CIRC 2FBWD 3AEAD 3AEDC 2WP9D 3P4SC 3AE6D 3AE4D 2WU5D 1NENC 2B76D 4YT0C 1ZP0C 1YQ4D 3AEBC 3P4RC 3VRBC 3AEGC 1KF6C
chains in the Genus database with same CATH superfamily
3AE2D 3P4SD 3P4PC 2WU2D 4YXDC 4YSXD 1NEND 4YT0D 1ZP0D 3AEBD 3AE9C 3AE7C 3P4RD 2WDRD 1KF6D 3AE6C 1TFFA 4DDGA 3AECD 3P4PD 4YXDD 3AE9D 3AE7D 2WDQC 3AE2C 2WU2C 4YSZC 4YSXC 3AE8D 4YSYC 2WQYD 2BS3C 1L0VD 1NEKC 1YQ3C 2WDRC 2WDQD 3AEFC 3AE5D 3AECC 4YSZD 4YSYD 4YTMD 1NEKD 1YQ3D 3SFDC 4DHJA 3VR8C 3AEFD 3AE8C 1ZOYD 2WQYC 4LDTA 1L0VC 4I6LA 4KX6C 2WS3D 3AE5C 5C3JC 3SFDD 2BS2C 3VR8D 4YTMC 4KX6D 3AE3C 5C2TD 4DHZA 5C3JD 3VRAC 2ACZC 1ZOYC 2H89C 3SFEC 1QLBC 2WS3C 2WDVC 3AE3D 3AE1D 4YTND 1E7PC 3VONA 2BS4C 2H88D 3VRAD 2ACZD 2H89D 5C2TC 3SFED 1KFYC 4YTPC 4DDIA 2WDVD 3CIRD 3P4QC 3AEEC 3AEDD 4DHIB 3VR9C 3ABVC 1KFYD 2FBWC 3AE1C 3AEAC 4YTNC 4YTPD 3P4QD 2H88C 3AEED 3VRBD 2WP9C 3AEGD 3AE4C 2WU5C 2B76C 3VR9D 1YQ4C 3ABVD 3CIRC 2FBWD 3AEAD 3AEDC 2WP9D 2ZFYA 4FJVA 3P4SC 3AE6D 3AE4D 2WU5D 1NENC 2B76D 4YT0C 1ZP0C 1YQ4D 3AEBC 3P4RC 3VRBC 3AEGC 1KF6C
chains in the Genus database with same CATH topology
3AE2D 3P4SD 3P4PC 2WU2D 4YXDC 4YSXD 1NEND 4YT0D 1ZP0D 3AEBD 3AE9C 3AE7C 3P4RD 2WDRD 1KF6D 3AE6C 3AECD 3P4PD 4YXDD 3AE9D 3AE7D 2WDQC 3AE2C 2WU2C 4YSZC 4YSXC 3AE8D 4YSYC 2WQYD 2BS3C 1L0VD 1NEKC 1YQ3C 2WDRC 2WDQD 3AEFC 3AE5D 3AECC 4YSZD 4YSYD 4YTMD 1NEKD 1YQ3D 3SFDC 3VR8C 3AEFD 3AE8C 1ZOYD 2WQYC 1L0VC 4KX6C 2WS3D 3AE5C 5C3JC 3SFDD 2BS2C 3VR8D 4YTMC 4KX6D 3AE3C 5C2TD 5C3JD 3VRAC 2ACZC 1ZOYC 2H89C 3SFEC 1QLBC 2WS3C 2WDVC 3AE3D 3AE1D 4YTND 1E7PC 2BS4C 2H88D 3VRAD 2ACZD 2H89D 5C2TC 3SFED 1KFYC 4YTPC 2WDVD 3CIRD 3P4QC 3AEEC 3AEDD 3VR9C 3ABVC 1KFYD 2FBWC 3AE1C 3AEAC 4YTNC 4YTPD 3P4QD 2H88C 3AEED 3VRBD 2WP9C 3AEGD 3AE4C 2WU5C 2B76C 3VR9D 1YQ4C 3ABVD 3CIRC 2FBWD 3AEAD 3AEDC 2WP9D 3P4SC 3AE6D 3AE4D 2WU5D 1NENC 2B76D 4YT0C 1ZP0C 1YQ4D 3AEBC 3P4RC 3VRBC 3AEGC 1KF6C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3AE2 D;  3P4S D;  3P4P C;  2WU2 D;  4YXD C;  4YSX D;  1NEN D;  4YT0 D;  1ZP0 D;  3AEB D;  3AE9 C;  3AE7 C;  3P4R D;  2WDR D;  1KF6 D;  3AE6 C;  3AEC D;  3P4P D;  4YXD D;  3AE9 D;  3AE7 D;  2WDQ C;  3AE2 C;  2WU2 C;  4YSZ C;  4YSX C;  3AE8 D;  4YSY C;  2WQY D;  2BS3 C;  1L0V D;  1NEK C;  1YQ3 C;  2WDR C;  2WDQ D;  3AEF C;  3AE5 D;  3AEC C;  4YSZ D;  4YSY D;  4YTM D;  1NEK D;  1YQ3 D;  3SFD C;  3VR8 C;  3AEF D;  3AE8 C;  1ZOY D;  2WQY C;  1L0V C;  4KX6 C;  2WS3 D;  3AE5 C;  5C3J C;  3SFD D;  2BS2 C;  3VR8 D;  4YTM C;  4KX6 D;  3AE3 C;  5C2T D;  5C3J D;  3VRA C;  2ACZ C;  1ZOY C;  2H89 C;  3SFE C;  1QLB C;  2WS3 C;  2WDV C;  3AE3 D;  3AE1 D;  4YTN D;  1E7P C;  2BS4 C;  2H88 D;  3VRA D;  2ACZ D;  2H89 D;  5C2T C;  3SFE D;  1KFY C;  4YTP C;  2WDV D;  3CIR D;  3P4Q C;  3AEE C;  3AED D;  3VR9 C;  3ABV C;  1KFY D;  2FBW C;  3AE1 C;  3AEA C;  4YTN C;  4YTP D;  3P4Q D;  2H88 C;  3AEE D;  3VRB D;  2WP9 C;  3AEG D;  3AE4 C;  2WU5 C;  2B76 C;  3VR9 D;  1YQ4 C;  3ABV D;  3CIR C;  2FBW D;  3AEA D;  3AED C;  2WP9 D;  3P4S C;  3AE6 D;  3AE4 D;  2WU5 D;  1NEN C;  2B76 D;  4YT0 C;  1ZP0 C;  1YQ4 D;  3AEB C;  3P4R C;  3VRB C;  3AEG C;  1KF6 C; 
#chains in the Genus database with same CATH topology
 3AE2 D;  3P4S D;  3P4P C;  2WU2 D;  4YXD C;  4YSX D;  1NEN D;  4YT0 D;  1ZP0 D;  3AEB D;  3AE9 C;  3AE7 C;  3P4R D;  2WDR D;  1KF6 D;  3AE6 C;  1TFF A;  4DDG A;  3AEC D;  3P4P D;  4YXD D;  3AE9 D;  3AE7 D;  2WDQ C;  3AE2 C;  2WU2 C;  4YSZ C;  4YSX C;  3AE8 D;  4YSY C;  2WQY D;  2BS3 C;  1L0V D;  1NEK C;  1YQ3 C;  2WDR C;  2WDQ D;  3AEF C;  3AE5 D;  3AEC C;  4YSZ D;  4YSY D;  4YTM D;  1NEK D;  1YQ3 D;  3SFD C;  4DHJ A;  3VR8 C;  3AEF D;  3AE8 C;  1ZOY D;  2WQY C;  4LDT A;  1L0V C;  4I6L A;  4KX6 C;  2WS3 D;  3AE5 C;  5C3J C;  3SFD D;  2BS2 C;  3VR8 D;  4YTM C;  4KX6 D;  3AE3 C;  5C2T D;  4DHZ A;  5C3J D;  3VRA C;  2ACZ C;  1ZOY C;  2H89 C;  3SFE C;  1QLB C;  2WS3 C;  2WDV C;  3AE3 D;  3AE1 D;  4YTN D;  1E7P C;  3VON A;  2BS4 C;  2H88 D;  3VRA D;  2ACZ D;  2H89 D;  5C2T C;  3SFE D;  1KFY C;  4YTP C;  4DDI A;  2WDV D;  3CIR D;  3P4Q C;  3AEE C;  3AED D;  4DHI B;  3VR9 C;  3ABV C;  1KFY D;  2FBW C;  3AE1 C;  3AEA C;  4YTN C;  4YTP D;  3P4Q D;  2H88 C;  3AEE D;  3VRB D;  2WP9 C;  3AEG D;  3AE4 C;  2WU5 C;  2B76 C;  3VR9 D;  1YQ4 C;  3ABV D;  3CIR C;  2FBW D;  3AEA D;  3AED C;  2WP9 D;  2ZFY A;  4FJV A;  3P4S C;  3AE6 D;  3AE4 D;  2WU5 D;  1NEN C;  2B76 D;  4YT0 C;  1ZP0 C;  1YQ4 D;  3AEB C;  3P4R C;  3VRB C;  3AEG C;  1KF6 C; 
#chains in the Genus database with same CATH homology
 3AE2 D;  3P4S D;  3P4P C;  2WU2 D;  4YXD C;  4YSX D;  1NEN D;  4YT0 D;  1ZP0 D;  3AEB D;  3AE9 C;  3AE7 C;  3P4R D;  2WDR D;  1KF6 D;  3AE6 C;  3AEC D;  3P4P D;  4YXD D;  3AE9 D;  3AE7 D;  2WDQ C;  3AE2 C;  2WU2 C;  4YSZ C;  4YSX C;  3AE8 D;  4YSY C;  2WQY D;  2BS3 C;  1L0V D;  1NEK C;  1YQ3 C;  2WDR C;  2WDQ D;  3AEF C;  3AE5 D;  3AEC C;  4YSZ D;  4YSY D;  4YTM D;  1NEK D;  1YQ3 D;  3SFD C;  3VR8 C;  3AEF D;  3AE8 C;  1ZOY D;  2WQY C;  1L0V C;  4KX6 C;  2WS3 D;  3AE5 C;  5C3J C;  3SFD D;  2BS2 C;  3VR8 D;  4YTM C;  4KX6 D;  3AE3 C;  5C2T D;  5C3J D;  3VRA C;  2ACZ C;  1ZOY C;  2H89 C;  3SFE C;  1QLB C;  2WS3 C;  2WDV C;  3AE3 D;  3AE1 D;  4YTN D;  1E7P C;  2BS4 C;  2H88 D;  3VRA D;  2ACZ D;  2H89 D;  5C2T C;  3SFE D;  1KFY C;  4YTP C;  2WDV D;  3CIR D;  3P4Q C;  3AEE C;  3AED D;  3VR9 C;  3ABV C;  1KFY D;  2FBW C;  3AE1 C;  3AEA C;  4YTN C;  4YTP D;  3P4Q D;  2H88 C;  3AEE D;  3VRB D;  2WP9 C;  3AEG D;  3AE4 C;  2WU5 C;  2B76 C;  3VR9 D;  1YQ4 C;  3ABV D;  3CIR C;  2FBW D;  3AEA D;  3AED C;  2WP9 D;  3P4S C;  3AE6 D;  3AE4 D;  2WU5 D;  1NEN C;  2B76 D;  4YT0 C;  1ZP0 C;  1YQ4 D;  3AEB C;  3P4R C;  3VRB C;  3AEG C;  1KF6 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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