1NEWA

Cytochrome c551.5, nmr
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
68
structure length
68
Chain Sequence
ADVVTYENKKGNVTFDHKAHAEKLGCDACHEGTPAKIAIDKKSAHKDACKTCHKSNNGPTKCGGCHIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME C551.5
publication title 800 MHz 1H NMR solution structure refinement of oxidized cytochrome c7 from Desulfuromonas acetoxidans.
pubmed doi rcsb
total genus 11
structure length 68
sequence length 68
ec nomenclature
pdb deposition date 1998-02-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02085 Cytochrom_CIII Class III cytochrome C family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 1newA00
4HAJA 3H33A 1KWJA 2MZ9A 2YYWA 1NEWA 2CY3A 3SELX 2KSUA 1UP9A 1OFWA 3SJ4X 3OV0A 2FFNA 3SJ1X 1Z1NX 1OS6A 3OUQA 1IT1A 2BPNA 2LZZA 2N91A 4HBFA 1GWSA 1CZJA 1QN1A 2EWIA 1WR5A 4HC3A 1MDVA 2EWKA 1QN0A 4HB6A 2EWUA 2CDVA 3CARA 1HH5A 1H29A 1OFYA 1W7OA 2YXCA 2CTHA 2KMYA 1EHJA 3BXUA 1J0OA 1I77A 1AQEA 2A3PA 3SJ0X 2A3MA 1L3OA 2CVCA 1LM2A 2LDOA 1F22A 1A2IA 19HCA 1WADA 1GM4A 1DUWA 4HB8A 1GYOA 3CYRA 1RWJA 1GMBA 2Z47A 1UPDA 2CYMA 4HDLA 1J0PA 2BQ4A 2E84A 2YYXA 3CAOA 3H4NA 3OUEA 3H34A
chains in the Genus database with same CATH superfamily
4HAJA 3H33A 1KWJA 2MZ9A 2YYWA 1NEWA 2CY3A 3SELX 2KSUA 1UP9A 1OFWA 3SJ4X 3OV0A 2FFNA 3SJ1X 1Z1NX 1OS6A 3OUQA 1IT1A 2BPNA 2LZZA 2N91A 4HBFA 1GWSA 1CZJA 1QN1A 2EWIA 1WR5A 4HC3A 1MDVA 2EWKA 1QN0A 4HB6A 2EWUA 2CDVA 3CARA 1HH5A 1H29A 1OFYA 1W7OA 2YXCA 2CTHA 2KMYA 1EHJA 3BXUA 1J0OA 1I77A 1AQEA 2A3PA 3SJ0X 2A3MA 1L3OA 2CVCA 1LM2A 2LDOA 1F22A 1A2IA 19HCA 1WADA 1GM4A 1DUWA 4HB8A 1GYOA 3CYRA 1RWJA 1GMBA 2Z47A 1UPDA 2CYMA 4HDLA 1J0PA 2BQ4A 2E84A 2YYXA 3CAOA 3H4NA 3OUEA 3H34A
chains in the Genus database with same CATH topology
4HAJA 3H33A 1KWJA 2MZ9A 2YYWA 1NEWA 2CY3A 3SELX 2KSUA 1UP9A 1OFWA 3SJ4X 3OV0A 2FFNA 3SJ1X 1Z1NX 1OS6A 3OUQA 1IT1A 2BPNA 2LZZA 2N91A 4HBFA 1GWSA 1CZJA 1QN1A 2EWIA 1WR5A 4HC3A 1MDVA 2EWKA 1QN0A 4HB6A 2EWUA 2CDVA 3CARA 1HH5A 1H29A 1OFYA 1W7OA 2YXCA 2CTHA 2KMYA 1EHJA 3BXUA 1J0OA 1I77A 1AQEA 2A3PA 3SJ0X 2A3MA 1L3OA 2CVCA 1LM2A 2LDOA 1F22A 1A2IA 19HCA 1WADA 1GM4A 1DUWA 4HB8A 1GYOA 3CYRA 1RWJA 1GMBA 2Z47A 1UPDA 2CYMA 4HDLA 1J0PA 2BQ4A 2E84A 2YYXA 3CAOA 3H4NA 3OUEA 3H34A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HAJ A;  3H33 A;  1KWJ A;  2MZ9 A;  2YYW A;  1NEW A;  2CY3 A;  3SEL X;  2KSU A;  1UP9 A;  1OFW A;  3SJ4 X;  3OV0 A;  2FFN A;  3SJ1 X;  1Z1N X;  1OS6 A;  3OUQ A;  1IT1 A;  2BPN A;  2LZZ A;  2N91 A;  4HBF A;  1GWS A;  1CZJ A;  1QN1 A;  2EWI A;  1WR5 A;  4HC3 A;  1MDV A;  2EWK A;  1QN0 A;  4HB6 A;  2EWU A;  2CDV A;  3CAR A;  1HH5 A;  1H29 A;  1OFY A;  1W7O A;  2YXC A;  2CTH A;  2KMY A;  1EHJ A;  3BXU A;  1J0O A;  1I77 A;  1AQE A;  2A3P A;  3SJ0 X;  2A3M A;  1L3O A;  2CVC A;  1LM2 A;  2LDO A;  1F22 A;  1A2I A;  19HC A;  1WAD A;  1GM4 A;  1DUW A;  4HB8 A;  1GYO A;  3CYR A;  1RWJ A;  1GMB A;  2Z47 A;  1UPD A;  2CYM A;  4HDL A;  1J0P A;  2BQ4 A;  2E84 A;  2YYX A;  3CAO A;  3H4N A;  3OUE A;  3H34 A; 
#chains in the Genus database with same CATH topology
 4HAJ A;  3H33 A;  1KWJ A;  2MZ9 A;  2YYW A;  1NEW A;  2CY3 A;  3SEL X;  2KSU A;  1UP9 A;  1OFW A;  3SJ4 X;  3OV0 A;  2FFN A;  3SJ1 X;  1Z1N X;  1OS6 A;  3OUQ A;  1IT1 A;  2BPN A;  2LZZ A;  2N91 A;  4HBF A;  1GWS A;  1CZJ A;  1QN1 A;  2EWI A;  1WR5 A;  4HC3 A;  1MDV A;  2EWK A;  1QN0 A;  4HB6 A;  2EWU A;  2CDV A;  3CAR A;  1HH5 A;  1H29 A;  1OFY A;  1W7O A;  2YXC A;  2CTH A;  2KMY A;  1EHJ A;  3BXU A;  1J0O A;  1I77 A;  1AQE A;  2A3P A;  3SJ0 X;  2A3M A;  1L3O A;  2CVC A;  1LM2 A;  2LDO A;  1F22 A;  1A2I A;  19HC A;  1WAD A;  1GM4 A;  1DUW A;  4HB8 A;  1GYO A;  3CYR A;  1RWJ A;  1GMB A;  2Z47 A;  1UPD A;  2CYM A;  4HDL A;  1J0P A;  2BQ4 A;  2E84 A;  2YYX A;  3CAO A;  3H4N A;  3OUE A;  3H34 A; 
#chains in the Genus database with same CATH homology
 4HAJ A;  3H33 A;  1KWJ A;  2MZ9 A;  2YYW A;  1NEW A;  2CY3 A;  3SEL X;  2KSU A;  1UP9 A;  1OFW A;  3SJ4 X;  3OV0 A;  2FFN A;  3SJ1 X;  1Z1N X;  1OS6 A;  3OUQ A;  1IT1 A;  2BPN A;  2LZZ A;  2N91 A;  4HBF A;  1GWS A;  1CZJ A;  1QN1 A;  2EWI A;  1WR5 A;  4HC3 A;  1MDV A;  2EWK A;  1QN0 A;  4HB6 A;  2EWU A;  2CDV A;  3CAR A;  1HH5 A;  1H29 A;  1OFY A;  1W7O A;  2YXC A;  2CTH A;  2KMY A;  1EHJ A;  3BXU A;  1J0O A;  1I77 A;  1AQE A;  2A3P A;  3SJ0 X;  2A3M A;  1L3O A;  2CVC A;  1LM2 A;  2LDO A;  1F22 A;  1A2I A;  19HC A;  1WAD A;  1GM4 A;  1DUW A;  4HB8 A;  1GYO A;  3CYR A;  1RWJ A;  1GMB A;  2Z47 A;  1UPD A;  2CYM A;  4HDL A;  1J0P A;  2BQ4 A;  2E84 A;  2YYX A;  3CAO A;  3H4N A;  3OUE A;  3H34 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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