1NGMA

Crystal structure of a yeast brf1-tbp-dna ternary complex
Total Genus 25
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
180
structure length
180
Chain Sequence
SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEFRKM
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of a transcription factor IIIB core interface ternary complex
pubmed doi rcsb
molecule keywords 5'-D(*CP*TP*AP*TP*AP*AP*AP*AP*AP*AP*AP*TP*GP*TP*TP*TP*TP*TP*
source organism Saccharomyces cerevisiae
molecule tags Transcription/dna
total genus 25
structure length 180
sequence length 180
chains with identical sequence E, I, M
ec nomenclature
pdb deposition date 2002-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00352 TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1ngmA01
3.30.310.10 Alpha Beta 2-Layer Sandwich TATA-Binding Protein TATA-Binding Protein 1ngmA02
2D0AA 1CDWA 5IYBP 1QN8A 1VTOA 1PCZA 2IV9A 3HS9A 1TBPA 1VTLE 1NVPA 1QN4A 4ROCB 5IYCP 3OCIA 1YTBA 1B9KA 1QN6A 1QN5A 1QNCA 3H1ZA 1KYDA 1VOKA 1PZDA 1JFIC 1D3UA 1AISA 1TGHA 1NH2A 1QTPA 2G30A 1NGMA 3OC3C 1QN7A 1KY7A 2Z8UA 5IYDP 4B0AA 1QTSA 2IV8A 3HS8A 4RODB 1QNAA 4WZSD 1W80A 3VN5A 1QNBA 1C9BB 2D0CA 1KYUA 1RM1A 1QNEA 2VJ0A 1MP9A 3ASMA 1E42A 1VOLB 1KY6A 3EIKA 4ROEB 1R4XA 4PY5A 1KYFA 1QN3A 1YTFA 2D0BA 1TBAB 2MJ7A 1QN9A
chains in the Genus database with same CATH superfamily
2FUVA 2HL9A 1WJWA 2HZMA 3CWSA 3HS9A 4HJHA 2QRDA 3IH7A 3CWTA 1P5GX 4ROCB 5IYCP 2Z0FA 3H1ZA 1D3UA 1PVSA 3DPUA 3OGDA 1YQKA 2H4LX 3ENCA 1AISA 1TGHA 1EBMA 1LWYA 3CWAA 3OC3C 1QN7A 1J3MA 1KY7A 5IYDP 1LXTA 5JMVD 3KRMA 1K2YX 3UW2A 4WZSD 3OH6A 1W80A 3VN5A 3KTUA 1QNBA 1QNAA 1KYUA 2D0CA 2JPIA 2FKMX 5F9CA 1YQRA 1MP9A 2NLVA 1M3QA 3OLPA 1N3CA 2FKFA 3F10A 4EJZA 2FGTA 1VKLA 1QN6A 2YH5A 4EAIA 2IV9A 1VTOA 1VTLE 2JHNA 1TUOA 2R5XA 4QG5A 2O3OA 4D7QA 1QN4A 2PWWA 4DULA 2HL8A 4Q11A 2NOEA 1FN7A 1KFQA 2V8QA 1N39A 2NOLA 1NGMA 2Z8UA 1DIZA 2IV8A 1C47A 3HS8A 4EALA 4RODB 1KFIA 2H5AX 1EUVA 3D7QA 3DPTA 1C9BB 1RM1A 1PCMX 1UT4A 1XSZA 3EIKA 2NOBA 1UL7A 1PCJX 2NOIA 2NOZA 2LAEA 2HKPA 2QLVA 2D0BA 4MRQA 5BMNA 3C04A 2MJ7A 1C4GA 1M5Q1 2D0AA 3RSMA 2JHJA 2DKAA 5IYBP 2F7LA 4C7PA 1CDWA 2XHIA 3PMGA 1P5DX 5EPCA 1Q9UA 3OSMA 1LWWA 1YQLA 3EAYA 1YTBA 1B9KA 3CWUA 3I3WA 1QN5A 3CVTA 3I0WA 2HZSA 1V5SA 3TDHA 1PZDA 4IL8A 1JFIC 3CW7A 3F0ZA 2EHBD 2V9JA 3OSEA 2OOYA 3OH9A 1N3AA 1QTSA 3ENOC 2QRCA 1HU0A 5HSHA 3CVSA 3RPJA 1MPGA 3ASMA 1E42A 1K35A 1KY6A 1R4XA 2NWVA 4I8OA 3ULXA 4EAKA 3I0XA 1YQMA 1M3HA 2I5WA 2QREA 1QN9A 1QN8A 1UT7A 1PCZA 2DKDA 1NVPA 1TBPA 5JN5A 3OSTA 3OCIA 4BJUA 1QNCA 1YTFA 3NA5A 2NOHA 2DKCA 1KYDA 2NOFA 1VOKA 2OOXA 4CFFA 4TPSA 1NH2A 1QTPA 2G30A 2ZFDB 4EAJA 3N89A 4B0AA 1JDYA 2YA3A 2V92A 2NVMA 3BKQX 5KL0A 2MZ8A 3PDKA 3TE5A 3D4VA 4EJYA 1T6AA 1QNEA 2VJ0A 1VOLB 5BMPA 3SNSA 1LWVA 4ROEB 1WQAA 2Y8LA 4D7RA 4WX8A 2QR1A 2Y8QA 1KYFA 2JOIA 3T4NA 4EAGA 1QN3A 4PY5A 1TBAB 1KO9A 4WXAA 5AN4A
chains in the Genus database with same CATH topology
2HZMA 3HS9A 3IH7A 4ROCB 5IYCP 3H1ZA 1D3UA 3DPUA 1YQKA 1AISA 1TGHA 1EBMA 1LWYA 3OC3C 1QN7A 1KY7A 5IYDP 3KRMA 1QNAA 4WZSD 1W80A 3VN5A 3KTUA 1QNBA 1KYUA 2D0CA 1YQRA 1MP9A 1M3QA 1N3CA 3F10A 4EJZA 2FGTA 1QN6A 2YH5A 1VTOA 2IV9A 1VTLE 1QN4A 2O3OA 4DULA 4Q11A 2NOEA 1FN7A 1N39A 2NOLA 2Z8UA 2IV8A 3HS8A 4RODB 1C9BB 3DPTA 1RM1A 1UT4A 3EIKA 2NOBA 2NOIA 2NOZA 2LAEA 1YTFA 2D0BA 2MJ7A 1NGMA 2D0AA 1CDWA 5IYBP 2XHIA 3OSMA 1LWWA 1YQLA 1YTBA 1B9KA 1QN5A 3I0WA 2HZSA 1PZDA 1JFIC 3F0ZA 1N3AA 1QTSA 1HU0A 3RPJA 3ASMA 1E42A 1KY6A 1R4XA 4I8OA 3ULXA 3I0XA 1M3HA 1YQMA 2I5WA 1QN9A 1QN8A 1UT7A 1PCZA 1NVPA 1TBPA 3OSTA 3OCIA 1QNCA 2NOHA 1KYDA 2NOFA 1VOKA 4TPSA 1NH2A 1QTPA 2G30A 3N89A 4B0AA 4EJYA 2MZ8A 1QNEA 2VJ0A 1VOLB 3SNSA 1LWVA 4ROEB 1KYFA 2JOIA 1QN3A 4PY5A 1TBAB 1KO9A 5AN4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2D0A A;  1CDW A;  5IYB P;  1QN8 A;  1VTO A;  1PCZ A;  2IV9 A;  3HS9 A;  1TBP A;  1VTL E;  1NVP A;  1QN4 A;  4ROC B;  5IYC P;  3OCI A;  1YTB A;  1B9K A;  1QN6 A;  1QN5 A;  1QNC A;  3H1Z A;  1KYD A;  1VOK A;  1PZD A;  1JFI C;  1D3U A;  1AIS A;  1TGH A;  1NH2 A;  1QTP A;  2G30 A;  1NGM A;  3OC3 C;  1QN7 A;  1KY7 A;  2Z8U A;  5IYD P;  4B0A A;  1QTS A;  2IV8 A;  3HS8 A;  4ROD B;  1QNA A;  4WZS D;  1W80 A;  3VN5 A;  1QNB A;  1C9B B;  2D0C A;  1KYU A;  1RM1 A;  1QNE A;  2VJ0 A;  1MP9 A;  3ASM A;  1E42 A;  1VOL B;  1KY6 A;  3EIK A;  4ROE B;  1R4X A;  4PY5 A;  1KYF A;  1QN3 A;  1YTF A;  2D0B A;  1TBA B;  2MJ7 A;  1QN9 A; 
#chains in the Genus database with same CATH topology
 2FUV A;  2HL9 A;  1WJW A;  2HZM A;  3CWS A;  3HS9 A;  4HJH A;  2QRD A;  3IH7 A;  3CWT A;  1P5G X;  4ROC B;  5IYC P;  2Z0F A;  3H1Z A;  1D3U A;  1PVS A;  3DPU A;  3OGD A;  1YQK A;  2H4L X;  3ENC A;  1AIS A;  1TGH A;  1EBM A;  1LWY A;  3CWA A;  3OC3 C;  1QN7 A;  1J3M A;  1KY7 A;  5IYD P;  1LXT A;  5JMV D;  3KRM A;  1K2Y X;  3UW2 A;  4WZS D;  3OH6 A;  1W80 A;  3VN5 A;  3KTU A;  1QNB A;  1QNA A;  1KYU A;  2D0C A;  2JPI A;  2FKM X;  5F9C A;  1YQR A;  1MP9 A;  2NLV A;  1M3Q A;  3OLP A;  1N3C A;  2FKF A;  3F10 A;  4EJZ A;  2FGT A;  1VKL A;  1QN6 A;  2YH5 A;  4EAI A;  2IV9 A;  1VTO A;  1VTL E;  2JHN A;  1TUO A;  2R5X A;  4QG5 A;  2O3O A;  4D7Q A;  1QN4 A;  2PWW A;  4DUL A;  2HL8 A;  4Q11 A;  2NOE A;  1FN7 A;  1KFQ A;  2V8Q A;  1N39 A;  2NOL A;  1NGM A;  2Z8U A;  1DIZ A;  2IV8 A;  1C47 A;  3HS8 A;  4EAL A;  4ROD B;  1KFI A;  2H5A X;  1EUV A;  3D7Q A;  3DPT A;  1C9B B;  1RM1 A;  1PCM X;  1UT4 A;  1XSZ A;  3EIK A;  2NOB A;  1UL7 A;  1PCJ X;  2NOI A;  2NOZ A;  2LAE A;  2HKP A;  2QLV A;  2D0B A;  4MRQ A;  5BMN A;  3C04 A;  2MJ7 A;  1C4G A;  1M5Q 1;  2D0A A;  3RSM A;  2JHJ A;  2DKA A;  5IYB P;  2F7L A;  4C7P A;  1CDW A;  2XHI A;  3PMG A;  1P5D X;  5EPC A;  1Q9U A;  3OSM A;  1LWW A;  1YQL A;  3EAY A;  1YTB A;  1B9K A;  3CWU A;  3I3W A;  1QN5 A;  3CVT A;  3I0W A;  2HZS A;  1V5S A;  3TDH A;  1PZD A;  4IL8 A;  1JFI C;  3CW7 A;  3F0Z A;  2EHB D;  2V9J A;  3OSE A;  2OOY A;  3OH9 A;  1N3A A;  1QTS A;  3ENO C;  2QRC A;  1HU0 A;  5HSH A;  3CVS A;  3RPJ A;  1MPG A;  3ASM A;  1E42 A;  1K35 A;  1KY6 A;  1R4X A;  2NWV A;  4I8O A;  3ULX A;  4EAK A;  3I0X A;  1YQM A;  1M3H A;  2I5W A;  2QRE A;  1QN9 A;  1QN8 A;  1UT7 A;  1PCZ A;  2DKD A;  1NVP A;  1TBP A;  5JN5 A;  3OST A;  3OCI A;  4BJU A;  1QNC A;  1YTF A;  3NA5 A;  2NOH A;  2DKC A;  1KYD A;  2NOF A;  1VOK A;  2OOX A;  4CFF A;  4TPS A;  1NH2 A;  1QTP A;  2G30 A;  2ZFD B;  4EAJ A;  3N89 A;  4B0A A;  1JDY A;  2YA3 A;  2V92 A;  2NVM A;  3BKQ X;  5KL0 A;  2MZ8 A;  3PDK A;  3TE5 A;  3D4V A;  4EJY A;  1T6A A;  1QNE A;  2VJ0 A;  1VOL B;  5BMP A;  3SNS A;  1LWV A;  4ROE B;  1WQA A;  2Y8L A;  4D7R A;  4WX8 A;  2QR1 A;  2Y8Q A;  1KYF A;  2JOI A;  3T4N A;  4EAG A;  1QN3 A;  4PY5 A;  1TBA B;  1KO9 A;  4WXA A;  5AN4 A; 
#chains in the Genus database with same CATH homology
 2HZM A;  3HS9 A;  3IH7 A;  4ROC B;  5IYC P;  3H1Z A;  1D3U A;  3DPU A;  1YQK A;  1AIS A;  1TGH A;  1EBM A;  1LWY A;  3OC3 C;  1QN7 A;  1KY7 A;  5IYD P;  3KRM A;  1QNA A;  4WZS D;  1W80 A;  3VN5 A;  3KTU A;  1QNB A;  1KYU A;  2D0C A;  1YQR A;  1MP9 A;  1M3Q A;  1N3C A;  3F10 A;  4EJZ A;  2FGT A;  1QN6 A;  2YH5 A;  1VTO A;  2IV9 A;  1VTL E;  1QN4 A;  2O3O A;  4DUL A;  4Q11 A;  2NOE A;  1FN7 A;  1N39 A;  2NOL A;  2Z8U A;  2IV8 A;  3HS8 A;  4ROD B;  1C9B B;  3DPT A;  1RM1 A;  1UT4 A;  3EIK A;  2NOB A;  2NOI A;  2NOZ A;  2LAE A;  1YTF A;  2D0B A;  2MJ7 A;  1NGM A;  2D0A A;  1CDW A;  5IYB P;  2XHI A;  3OSM A;  1LWW A;  1YQL A;  1YTB A;  1B9K A;  1QN5 A;  3I0W A;  2HZS A;  1PZD A;  1JFI C;  3F0Z A;  1N3A A;  1QTS A;  1HU0 A;  3RPJ A;  3ASM A;  1E42 A;  1KY6 A;  1R4X A;  4I8O A;  3ULX A;  3I0X A;  1M3H A;  1YQM A;  2I5W A;  1QN9 A;  1QN8 A;  1UT7 A;  1PCZ A;  1NVP A;  1TBP A;  3OST A;  3OCI A;  1QNC A;  2NOH A;  1KYD A;  2NOF A;  1VOK A;  4TPS A;  1NH2 A;  1QTP A;  2G30 A;  3N89 A;  4B0A A;  4EJY A;  2MZ8 A;  1QNE A;  2VJ0 A;  1VOL B;  3SNS A;  1LWV A;  4ROE B;  1KYF A;  2JOI A;  1QN3 A;  4PY5 A;  1TBA B;  1KO9 A;  5AN4 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...