1NJIJ

Structure of chloramphenicol bound to the 50s ribosomal subunit
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S ribosomal RNA
publication title Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
pubmed doi rcsb
total genus 27
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2002-12-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1njiJ00
1K8AJ 1VQPH 5JVHJ 3DLLJ 3CXCH 5GAGN 2QEXH 1Q81J 3PIOJ 3CMEH 1YJWH 3CD6H 4IO9J 1VQKH 5HL7J 1VQ9H 3I56H 1YIJH 4WCEJ 1Q82J 1YJNH 2OTLH 4WFNJ 3G71H 2ZJQJ 1KC8J 1M1KJ 1VQ7H 1VQ6H 5GAHN 1VQ5H 1M90J 2OTJH 5H1SO 3CCQH 1VQNH 1VQLH 1VQ8H 1YHQH 3CCVH 1YITH 1KD1J 1KQSH 3CCJH 3G6EH 3G4SH 4WFAJ 1JJ2H 4U67J 3PIPJ 1Q7YJ 5GAEN 3OW2H 1QVFH 1S72H 2QA4H 2ZJRJ 3I55H 3CC2H 1Y69K 1N8RJ 4WF9J 4IOCJ 3CCLH 1YI2H 1Q86J 2ZJPJ 3CCRH 5JVGJ 1QVGH 3CF5J 5GADN 1VQ4H 5MLCO 3CCMH 3CCUH 5DM6J 1YJ9H 1K73J 3J7ZM 3CC4H 1W2BH 3CMAH 1VQMH 3CC7H 3CPWH 5AN9F 3CCEH 3CCSH 4IOAJ 1WKIA 1NJIJ 1VQOH 4UY8M 5DM7J 4WFBJ 1K9MJ 2PA2A
chains in the Genus database with same CATH superfamily
1V97A 4EAFA 1K8AJ 1VQPH 5JVHJ 3DLLJ 3RPFA 3CXCH 3AN1A 4X46A 5GAGN 4GA4A 3C2EA 5HULA 2QEXH 1YTDA 2E3TA 1N5XA 4YEKA 1SIJA 2Q5WE 1Q81J 3NRZC 3PIOJ 3CMEH 3B9JC 3VMMA 5EY3A 5AYYA 3AM9A 1YJWH 3CD6H 3SR6C 1UOUA 4IO9J 1VLBA 1VQKH 5HL7J 1X1OA 3EUB4 4GA5A 1VQ9H 3I56H 1QPQA 1YIJH 2QIEA 1BRWA 2B7PA 1N62B 1QAPA 4WCEJ 3NS1C 1Q82J 1YJNH 2OTLH 1QPNA 4WFNJ 3G71H 2ZJQJ 1KC8J 5AYXA 1M1KJ 2I14A 3NVWC 1VQ7H 3PAJA 3GNNA 1VQ6H 5GAHN 2B7QA 1O4UA 1AZYA 1VQ5H 3C2VA 3ETRC 1N60B 1M90J 3C2RA 4KWVA 2OTJH 3C2OA 2TPTA 1N5WB 3NVYC 5H1SO 2WP4A 1DGJA 4AP8A 3CCQH 3FAHA 1K9MJ 1VQNH 1VQLH 1VQ8H 3WO0A 3H5QA 1NVIE 4LHMA 1FM0E 2I1OA 1YHQH 2JBMA 3CCVH 1YITH 3AMZA 2W3RB 1KD1J 1KQSH 1YTKA 2W55B 3L4PA 3CCJH 1N63B 1FIQC 1FFUB 3NVZC 3G6EH 3G4SH 1YTEA 3NVVC 5EP8A 1NVJA 4WFAJ 2WK5A 1QPOA 1JJ2H 1OTPA 4KWWA 4U67J 4USAA 3TQVA 3PIPJ 1Q7YJ 1ZXIB 2B7NA 2WK6A 4I9AA 4C80A 5GAEN 5HUPA 3OW2H 1QVFH 4XR5A 3WNZA 4C7YA 4EADA 1S72H 2QA4H 2ZJRJ 3I55H 3CC2H 1Y69K 2W3SB 1SB3A 5AYZA 1N8RJ 4WF9J 4C7ZA 4GA6A 4IOCJ 1YI2H 1Q86J 2ZJPJ 5GADN 3CCRH 3FC4A 3CF5J 5JVGJ 3BIIE 1QVGH 1RM6A 1VDVA 2W54B 5HUOA 5MLCO 3CCMH 1N61B 3CCUH 1VQ4H 4YYYA 5DM6J 1FMAE 1YJ9H 1K73J 4ZOHA 3J7ZM 4US9A 3CC4H 1FO4A 2J0FA 1JROB 2DSJA 1QPRA 1W2BH 3CMAH 2OMDA 1VQMH 3CC7H 3CPWH 5AN9F 5MPOC 3C2FA 3WO1A 3CCEH 3CCSH 4IOAJ 1JRPB 1WKIA 1NJIJ 1VQOH 4UY8M 1FFVB 5DM7J 4WFBJ 1WYGA 3L0GA 4US8A 3CCLH 2PA2A
chains in the Genus database with same CATH topology
1K8AJ 1VQPH 5JVHJ 3DLLJ 3CXCH 5GAGN 2QEXH 1Q81J 3PIOJ 3CMEH 1YJWH 3CD6H 4IO9J 1VQKH 5HL7J 1VQ9H 3I56H 1YIJH 4WCEJ 1Q82J 1YJNH 2OTLH 4WFNJ 3G71H 2ZJQJ 1KC8J 1M1KJ 1VQ7H 1VQ6H 5GAHN 1VQ5H 1M90J 2OTJH 5H1SO 3CCQH 1VQNH 1VQLH 1VQ8H 1YHQH 3CCVH 1YITH 1KD1J 1KQSH 3CCJH 3G6EH 3G4SH 4WFAJ 1JJ2H 4U67J 3PIPJ 1Q7YJ 5GAEN 3OW2H 1QVFH 1S72H 2QA4H 2ZJRJ 3I55H 3CC2H 1Y69K 1N8RJ 4WF9J 4IOCJ 3CCLH 1YI2H 1Q86J 2ZJPJ 3CCRH 5JVGJ 1QVGH 3CF5J 5GADN 1VQ4H 5MLCO 3CCMH 3CCUH 5DM6J 1YJ9H 1K73J 3J7ZM 3CC4H 1W2BH 3CMAH 1VQMH 3CC7H 3CPWH 5AN9F 3CCEH 3CCSH 4IOAJ 1WKIA 1NJIJ 1VQOH 4UY8M 5DM7J 4WFBJ 1K9MJ 2PA2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K8A J;  1VQP H;  5JVH J;  3DLL J;  3CXC H;  5GAG N;  2QEX H;  1Q81 J;  3PIO J;  3CME H;  1YJW H;  3CD6 H;  4IO9 J;  1VQK H;  5HL7 J;  1VQ9 H;  3I56 H;  1YIJ H;  4WCE J;  1Q82 J;  1YJN H;  2OTL H;  4WFN J;  3G71 H;  2ZJQ J;  1KC8 J;  1M1K J;  1VQ7 H;  1VQ6 H;  5GAH N;  1VQ5 H;  1M90 J;  2OTJ H;  5H1S O;  3CCQ H;  1VQN H;  1VQL H;  1VQ8 H;  1YHQ H;  3CCV H;  1YIT H;  1KD1 J;  1KQS H;  3CCJ H;  3G6E H;  3G4S H;  4WFA J;  1JJ2 H;  4U67 J;  3PIP J;  1Q7Y J;  5GAE N;  3OW2 H;  1QVF H;  1S72 H;  2QA4 H;  2ZJR J;  3I55 H;  3CC2 H;  1Y69 K;  1N8R J;  4WF9 J;  4IOC J;  3CCL H;  1YI2 H;  1Q86 J;  2ZJP J;  3CCR H;  5JVG J;  1QVG H;  3CF5 J;  5GAD N;  1VQ4 H;  5MLC O;  3CCM H;  3CCU H;  5DM6 J;  1YJ9 H;  1K73 J;  3J7Z M;  3CC4 H;  1W2B H;  3CMA H;  1VQM H;  3CC7 H;  3CPW H;  5AN9 F;  3CCE H;  3CCS H;  4IOA J;  1WKI A;  1NJI J;  1VQO H;  4UY8 M;  5DM7 J;  4WFB J;  1K9M J;  2PA2 A; 
#chains in the Genus database with same CATH topology
 1V97 A;  4EAF A;  1K8A J;  1VQP H;  5JVH J;  3DLL J;  3RPF A;  3CXC H;  3AN1 A;  4X46 A;  5GAG N;  4GA4 A;  3C2E A;  5HUL A;  2QEX H;  1YTD A;  2E3T A;  1N5X A;  4YEK A;  1SIJ A;  2Q5W E;  1Q81 J;  3NRZ C;  3PIO J;  3CME H;  3B9J C;  3VMM A;  5EY3 A;  5AYY A;  3AM9 A;  1YJW H;  3CD6 H;  3SR6 C;  1UOU A;  4IO9 J;  1VLB A;  1VQK H;  5HL7 J;  1X1O A;  3EUB 4;  4GA5 A;  1VQ9 H;  3I56 H;  1QPQ A;  1YIJ H;  2QIE A;  1BRW A;  2B7P A;  1N62 B;  1QAP A;  4WCE J;  3NS1 C;  1Q82 J;  1YJN H;  2OTL H;  1QPN A;  4WFN J;  3G71 H;  2ZJQ J;  1KC8 J;  5AYX A;  1M1K J;  2I14 A;  3NVW C;  1VQ7 H;  3PAJ A;  3GNN A;  1VQ6 H;  5GAH N;  2B7Q A;  1O4U A;  1AZY A;  1VQ5 H;  3C2V A;  3ETR C;  1N60 B;  1M90 J;  3C2R A;  4KWV A;  2OTJ H;  3C2O A;  2TPT A;  1N5W B;  3NVY C;  5H1S O;  2WP4 A;  1DGJ A;  4AP8 A;  3CCQ H;  3FAH A;  1K9M J;  1VQN H;  1VQL H;  1VQ8 H;  3WO0 A;  3H5Q A;  1NVI E;  4LHM A;  1FM0 E;  2I1O A;  1YHQ H;  2JBM A;  3CCV H;  1YIT H;  3AMZ A;  2W3R B;  1KD1 J;  1KQS H;  1YTK A;  2W55 B;  3L4P A;  3CCJ H;  1N63 B;  1FIQ C;  1FFU B;  3NVZ C;  3G6E H;  3G4S H;  1YTE A;  3NVV C;  5EP8 A;  1NVJ A;  4WFA J;  2WK5 A;  1QPO A;  1JJ2 H;  1OTP A;  4KWW A;  4U67 J;  4USA A;  3TQV A;  3PIP J;  1Q7Y J;  1ZXI B;  2B7N A;  2WK6 A;  4I9A A;  4C80 A;  5GAE N;  5HUP A;  3OW2 H;  1QVF H;  4XR5 A;  3WNZ A;  4C7Y A;  4EAD A;  1S72 H;  2QA4 H;  2ZJR J;  3I55 H;  3CC2 H;  1Y69 K;  2W3S B;  1SB3 A;  5AYZ A;  1N8R J;  4WF9 J;  4C7Z A;  4GA6 A;  4IOC J;  1YI2 H;  1Q86 J;  2ZJP J;  5GAD N;  3CCR H;  3FC4 A;  3CF5 J;  5JVG J;  3BII E;  1QVG H;  1RM6 A;  1VDV A;  2W54 B;  5HUO A;  5MLC O;  3CCM H;  1N61 B;  3CCU H;  1VQ4 H;  4YYY A;  5DM6 J;  1FMA E;  1YJ9 H;  1K73 J;  4ZOH A;  3J7Z M;  4US9 A;  3CC4 H;  1FO4 A;  2J0F A;  1JRO B;  2DSJ A;  1QPR A;  1W2B H;  3CMA H;  2OMD A;  1VQM H;  3CC7 H;  3CPW H;  5AN9 F;  5MPO C;  3C2F A;  3WO1 A;  3CCE H;  3CCS H;  4IOA J;  1JRP B;  1WKI A;  1NJI J;  1VQO H;  4UY8 M;  1FFV B;  5DM7 J;  4WFB J;  1WYG A;  3L0G A;  4US8 A;  3CCL H;  2PA2 A; 
#chains in the Genus database with same CATH homology
 1K8A J;  1VQP H;  5JVH J;  3DLL J;  3CXC H;  5GAG N;  2QEX H;  1Q81 J;  3PIO J;  3CME H;  1YJW H;  3CD6 H;  4IO9 J;  1VQK H;  5HL7 J;  1VQ9 H;  3I56 H;  1YIJ H;  4WCE J;  1Q82 J;  1YJN H;  2OTL H;  4WFN J;  3G71 H;  2ZJQ J;  1KC8 J;  1M1K J;  1VQ7 H;  1VQ6 H;  5GAH N;  1VQ5 H;  1M90 J;  2OTJ H;  5H1S O;  3CCQ H;  1VQN H;  1VQL H;  1VQ8 H;  1YHQ H;  3CCV H;  1YIT H;  1KD1 J;  1KQS H;  3CCJ H;  3G6E H;  3G4S H;  4WFA J;  1JJ2 H;  4U67 J;  3PIP J;  1Q7Y J;  5GAE N;  3OW2 H;  1QVF H;  1S72 H;  2QA4 H;  2ZJR J;  3I55 H;  3CC2 H;  1Y69 K;  1N8R J;  4WF9 J;  4IOC J;  3CCL H;  1YI2 H;  1Q86 J;  2ZJP J;  3CCR H;  5JVG J;  1QVG H;  3CF5 J;  5GAD N;  1VQ4 H;  5MLC O;  3CCM H;  3CCU H;  5DM6 J;  1YJ9 H;  1K73 J;  3J7Z M;  3CC4 H;  1W2B H;  3CMA H;  1VQM H;  3CC7 H;  3CPW H;  5AN9 F;  3CCE H;  3CCS H;  4IOA J;  1WKI A;  1NJI J;  1VQO H;  4UY8 M;  5DM7 J;  4WFB J;  1K9M J;  2PA2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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