1NK1A

Nk1 fragment of human hepatocyte growth factor/scatter factor (hgf/sf) at 2.5 angstrom resolution
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
172
structure length
172
Chain Sequence
TIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/growth factor
molecule keywords PROTEIN (HEPATOCYTE GROWTH FACTOR PRECURSOR)
publication title Crystal structure of the NK1 fragment of HGF/SF suggests a novel mode for growth factor dimerization and receptor binding.
pubmed doi rcsb
source organism Homo sapiens
total genus 32
structure length 172
sequence length 172
chains with identical sequence B
ec nomenclature
pdb deposition date 1998-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 1nk1A02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 1nk1A01
2HGFA 2F83A 3HMSA 2X2ZA 4UV6A 5CS9A 2Y8RA 2DOIA 4UAOA 2DOHX 5CSQA 2PF2A 2LL3A 2KJ4A 2KNFA 1KRNA 1BHTA 1PMKA 5COEA 3E6PL 3NXPA 3HMTA 5I25A 4Z0DA 4CIKA 3ZLEA 3SP8A 1JFNA 2K4RA 4IUAA 2K51A 2Z8WA 4R1AA 2PF1A 4R1CA 3SRJA 1URKA 5CS1A 4R1BA 4BVVA 1TPKA 5HPGA 3BT1A 5CS5A 1HPJA 1NL2A 4KIVA 1I5KA 1CEBA 3LAQA 3BT2A 1GP9A 2J8LA 4APLA 1NL1A 1YXEA 2YILA 1A0HA 2I9BA 1GMOA 2HPQP 2L0SA 2QJ4A 2HPPP 4D3CA 4Z0EA 2PK4A 2SPTA 5CT3A 4A5TS 1W8KA 5EODA 4BVCA 1KDUA 2Q8BA 4APMA 2QJ2A 3ZWZA 3SRIA 4HZHA 4DURA 1KIVA 2FEBA 4R19A 3KIVA 2YIOA 4BVDA 4NZQA 3HMRA 4BVWA 2Q8AA 3K65A 3U73A 4BV7A 2J8JA 1I8NA 1Z40A 1PK2A 1GMNA 1CEAA 1HPKA 4Z09A 5CP9A 5CS3A 2Z8VA 5EOKA 5CT1A 4O03A 2FD6A 2YIPA 1HKYA 3MKPA 1B2IA 1PK4A 1NK1A 1PKRA 2K13X 2I9AA 2LL4M 1W81A 4BV5A 3HN4A 4Z0FA 1I71A 5CT2A 1KI0A 1PMLA
chains in the Genus database with same CATH superfamily
2HGFA 2F83A 3HMSA 2X2ZA 4UV6A 5CS9A 2Y8RA 2KL5A 2DOIA 4UAOA 2DOHX 5CSQA 2PF2A 2LL3A 2KJ4A 2KNFA 1KRNA 1BHTA 1PMKA 5COEA 3E6PL 3NXPA 3HMTA 5I25A 4Z0DA 4CIKA 3ZLEA 3SP8A 1JFNA 2K4RA 4IUAA 2K51A 2Z8WA 4R1AA 2PF1A 4R1CA 4YIVA 1URKA 3SRJA 5CS1A 4R1BA 4BVVA 1TPKA 5HPGA 3BT1A 5CS5A 1HPJA 1NL2A 4KIVA 1I5KA 1CEBA 3LAQA 3BT2A 1GP9A 2J8LA 4APLA 1NL1A 1YXEA 2YILA 1A0HA 2I9BA 1GMOA 2HPQP 2L0SA 2QJ4A 2HPPP 4D3CA 4Z0EA 2PK4A 2SPTA 5CT3A 4A5TS 1W8KA 5EODA 4BVCA 1KDUA 2Q8BA 4APMA 2QJ2A 4YIZA 3ZWZA 3SRIA 4HZHA 4DURA 1KIVA 2FEBA 4R19A 3KIVA 2YIOA 4BVDA 4NZQA 3HMRA 4BVWA 2Q8AA 3K65A 3U73A 4BV7A 2J8JA 1I8NA 1Z40A 1PK2A 1GMNA 1CEAA 1HPKA 4Z09A 5CP9A 5CS3A 2Z8VA 5EOKA 5CT1A 4O03A 2FD6A 2YIPA 1HKYA 3MKPA 1B2IA 1PK4A 1NK1A 1PKRA 2K13X 2I9AA 2LL4M 1W81A 4BV5A 3HN4A 4Z0FA 1I71A 5CT2A 1KI0A 1PMLA
chains in the Genus database with same CATH topology
2HGFA 2F83A 3HMSA 2X2ZA 4UV6A 5CS9A 2Y8RA 2KL5A 2DOIA 4UAOA 2DOHX 5CSQA 2PF2A 2LL3A 2KJ4A 2KNFA 1KRNA 1BHTA 1PMKA 5COEA 3E6PL 3NXPA 3HMTA 5I25A 4Z0DA 4CIKA 3ZLEA 3SP8A 1JFNA 2K4RA 4IUAA 2K51A 2Z8WA 4R1AA 2PF1A 4R1CA 4YIVA 1URKA 3SRJA 5CS1A 4R1BA 4BVVA 1TPKA 5HPGA 3BT1A 5CS5A 1HPJA 1NL2A 4KIVA 1I5KA 1CEBA 3LAQA 3BT2A 1GP9A 2J8LA 4APLA 1NL1A 1YXEA 2YILA 1A0HA 2I9BA 1GMOA 2HPQP 2L0SA 2QJ4A 2HPPP 4D3CA 4Z0EA 2PK4A 2SPTA 5CT3A 4A5TS 1W8KA 5EODA 4BVCA 1KDUA 2Q8BA 4APMA 2QJ2A 4YIZA 3ZWZA 3SRIA 4HZHA 4DURA 1KIVA 2FEBA 4R19A 3KIVA 2YIOA 4BVDA 4NZQA 3HMRA 4BVWA 2Q8AA 3K65A 3U73A 4BV7A 2J8JA 1I8NA 1Z40A 1PK2A 1GMNA 1CEAA 1HPKA 4Z09A 5CP9A 5CS3A 2Z8VA 5EOKA 5CT1A 4O03A 2FD6A 2YIPA 1HKYA 3MKPA 1B2IA 1PK4A 1NK1A 1PKRA 2K13X 2I9AA 2LL4M 1W81A 4BV5A 3HN4A 4Z0FA 1I71A 5CT2A 1KI0A 1PMLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HGF A;  2F83 A;  3HMS A;  2X2Z A;  4UV6 A;  5CS9 A;  2Y8R A;  2DOI A;  4UAO A;  2DOH X;  5CSQ A;  2PF2 A;  2LL3 A;  2KJ4 A;  2KNF A;  1KRN A;  1BHT A;  1PMK A;  5COE A;  3E6P L;  3NXP A;  3HMT A;  5I25 A;  4Z0D A;  4CIK A;  3ZLE A;  3SP8 A;  1JFN A;  2K4R A;  4IUA A;  2K51 A;  2Z8W A;  4R1A A;  2PF1 A;  4R1C A;  3SRJ A;  1URK A;  5CS1 A;  4R1B A;  4BVV A;  1TPK A;  5HPG A;  3BT1 A;  5CS5 A;  1HPJ A;  1NL2 A;  4KIV A;  1I5K A;  1CEB A;  3LAQ A;  3BT2 A;  1GP9 A;  2J8L A;  4APL A;  1NL1 A;  1YXE A;  2YIL A;  1A0H A;  2I9B A;  1GMO A;  2HPQ P;  2L0S A;  2QJ4 A;  2HPP P;  4D3C A;  4Z0E A;  2PK4 A;  2SPT A;  5CT3 A;  4A5T S;  1W8K A;  5EOD A;  4BVC A;  1KDU A;  2Q8B A;  4APM A;  2QJ2 A;  3ZWZ A;  3SRI A;  4HZH A;  4DUR A;  1KIV A;  2FEB A;  4R19 A;  3KIV A;  2YIO A;  4BVD A;  4NZQ A;  3HMR A;  4BVW A;  2Q8A A;  3K65 A;  3U73 A;  4BV7 A;  2J8J A;  1I8N A;  1Z40 A;  1PK2 A;  1GMN A;  1CEA A;  1HPK A;  4Z09 A;  5CP9 A;  5CS3 A;  2Z8V A;  5EOK A;  5CT1 A;  4O03 A;  2FD6 A;  2YIP A;  1HKY A;  3MKP A;  1B2I A;  1PK4 A;  1NK1 A;  1PKR A;  2K13 X;  2I9A A;  2LL4 M;  1W81 A;  4BV5 A;  3HN4 A;  4Z0F A;  1I71 A;  5CT2 A;  1KI0 A;  1PML A; 
#chains in the Genus database with same CATH topology
 2HGF A;  2F83 A;  3HMS A;  2X2Z A;  4UV6 A;  5CS9 A;  2Y8R A;  2KL5 A;  2DOI A;  4UAO A;  2DOH X;  5CSQ A;  2PF2 A;  2LL3 A;  2KJ4 A;  2KNF A;  1KRN A;  1BHT A;  1PMK A;  5COE A;  3E6P L;  3NXP A;  3HMT A;  5I25 A;  4Z0D A;  4CIK A;  3ZLE A;  3SP8 A;  1JFN A;  2K4R A;  4IUA A;  2K51 A;  2Z8W A;  4R1A A;  2PF1 A;  4R1C A;  4YIV A;  1URK A;  3SRJ A;  5CS1 A;  4R1B A;  4BVV A;  1TPK A;  5HPG A;  3BT1 A;  5CS5 A;  1HPJ A;  1NL2 A;  4KIV A;  1I5K A;  1CEB A;  3LAQ A;  3BT2 A;  1GP9 A;  2J8L A;  4APL A;  1NL1 A;  1YXE A;  2YIL A;  1A0H A;  2I9B A;  1GMO A;  2HPQ P;  2L0S A;  2QJ4 A;  2HPP P;  4D3C A;  4Z0E A;  2PK4 A;  2SPT A;  5CT3 A;  4A5T S;  1W8K A;  5EOD A;  4BVC A;  1KDU A;  2Q8B A;  4APM A;  2QJ2 A;  4YIZ A;  3ZWZ A;  3SRI A;  4HZH A;  4DUR A;  1KIV A;  2FEB A;  4R19 A;  3KIV A;  2YIO A;  4BVD A;  4NZQ A;  3HMR A;  4BVW A;  2Q8A A;  3K65 A;  3U73 A;  4BV7 A;  2J8J A;  1I8N A;  1Z40 A;  1PK2 A;  1GMN A;  1CEA A;  1HPK A;  4Z09 A;  5CP9 A;  5CS3 A;  2Z8V A;  5EOK A;  5CT1 A;  4O03 A;  2FD6 A;  2YIP A;  1HKY A;  3MKP A;  1B2I A;  1PK4 A;  1NK1 A;  1PKR A;  2K13 X;  2I9A A;  2LL4 M;  1W81 A;  4BV5 A;  3HN4 A;  4Z0F A;  1I71 A;  5CT2 A;  1KI0 A;  1PML A; 
#chains in the Genus database with same CATH homology
 2HGF A;  2F83 A;  3HMS A;  2X2Z A;  4UV6 A;  5CS9 A;  2Y8R A;  2KL5 A;  2DOI A;  4UAO A;  2DOH X;  5CSQ A;  2PF2 A;  2LL3 A;  2KJ4 A;  2KNF A;  1KRN A;  1BHT A;  1PMK A;  5COE A;  3E6P L;  3NXP A;  3HMT A;  5I25 A;  4Z0D A;  4CIK A;  3ZLE A;  3SP8 A;  1JFN A;  2K4R A;  4IUA A;  2K51 A;  2Z8W A;  4R1A A;  2PF1 A;  4R1C A;  4YIV A;  1URK A;  3SRJ A;  5CS1 A;  4R1B A;  4BVV A;  1TPK A;  5HPG A;  3BT1 A;  5CS5 A;  1HPJ A;  1NL2 A;  4KIV A;  1I5K A;  1CEB A;  3LAQ A;  3BT2 A;  1GP9 A;  2J8L A;  4APL A;  1NL1 A;  1YXE A;  2YIL A;  1A0H A;  2I9B A;  1GMO A;  2HPQ P;  2L0S A;  2QJ4 A;  2HPP P;  4D3C A;  4Z0E A;  2PK4 A;  2SPT A;  5CT3 A;  4A5T S;  1W8K A;  5EOD A;  4BVC A;  1KDU A;  2Q8B A;  4APM A;  2QJ2 A;  4YIZ A;  3ZWZ A;  3SRI A;  4HZH A;  4DUR A;  1KIV A;  2FEB A;  4R19 A;  3KIV A;  2YIO A;  4BVD A;  4NZQ A;  3HMR A;  4BVW A;  2Q8A A;  3K65 A;  3U73 A;  4BV7 A;  2J8J A;  1I8N A;  1Z40 A;  1PK2 A;  1GMN A;  1CEA A;  1HPK A;  4Z09 A;  5CP9 A;  5CS3 A;  2Z8V A;  5EOK A;  5CT1 A;  4O03 A;  2FD6 A;  2YIP A;  1HKY A;  3MKP A;  1B2I A;  1PK4 A;  1NK1 A;  1PKR A;  2K13 X;  2I9A A;  2LL4 M;  1W81 A;  4BV5 A;  3HN4 A;  4Z0F A;  1I71 A;  5CT2 A;  1KI0 A;  1PML A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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