1NM0A

Proteus mirabilis catalase in complex with formiate
Total Genus 145
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
145
sequence length
476
structure length
475
Chain Sequence
KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIERGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Catalase
publication title Structural studies of Proteus mirabilis catalase in its ground state, oxidized state and in complex with formic acid.
pubmed doi rcsb
total genus 145
structure length 475
sequence length 476
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2003-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1nm0A00
2XF2A 1P80A 2CAGA 4QONA 2ISAA 2CAHA 3DY5A 3HB6A 3PQ2A 4QOQA 4E37A 1CF9A 1GGEA 1GG9A 3P9PA 3TTTA 1H6NA 4B31A 3PQ7A 4ENPA 4AUMA 1QWLA 2IQFA 3TTUA 1QF7A 4AUEA 4ENTA 1M7SA 3PQ4A 4ENRA 4QOPA 3TTXA 3TTVA 4ENQA 1GWFA 1F4JA 3EJ6A 1GWHA 1GGHA 1IPHA 3VU3A 1GGJA 4QORA 4ENWA 1MQFA 5BV2P 4AJ9A 4ENVA 1GWEA 3ZJ4A 4B40A 4AULA 1GGFA 4QOOA 2J2MA 3P9SA 1GGKA 3TTWA 4B5KA 1P81A 4BFLA 1SY7A 3P9RA 1QWSA 1HBZA 3PQ6A 1H7KA 1P7YA 4QOMA 1P7ZA 1NM0A 1QWMA 4AUNA 4ENUA 3PQ3A 4CABA 1E93A 2XQ1A 3PQ5A 3P9QA 4ENSA 2A9EA 1A4EA 1U5UA 4B2YA 4BIMA 2IUFA 3PQ8A 1M85A 4QOLA 1SI8A 4B7AA 3ZJ5A
chains in the Genus database with same CATH superfamily
1TH2A 2XF2A 1P80A 2CAGA 4QONA 2ISAA 2CAHA 1DGGA 3DY5A 1DGHB 3HB6A 3PQ2A 4QOQA 4E37A 1CF9A 1GGEA 1GG9A 3P9PA 3TTTA 1TH4A 1H6NA 4B31A 3PQ7A 4ENPA 4AUMA 1QWLA 2IQFA 3TTUA 1QF7A 7CATA 4AUEA 4ENTA 1M7SA 1QQWA 3PQ4A 4ENRA 4QOPA 3TTXA 3TTVA 4ENQA 1GWFA 1F4JA 3EJ6A 1GWHA 1GGHA 1IPHA 3VU3A 1GGJA 3J7BA 4QORA 4ENWA 3E4WA 1MQFA 3RGSA 5BV2P 4AJ9A 4ENVA 1GWEA 3ZJ4A 3NWLA 4B40A 1TH3A 4AULA 1GGFA 4QOOA 2J2MA 3P9SA 1GGKA 3TTWA 4B5KA 1P81A 4BFLA 1SY7A 3P9RA 1QWSA 4B7FA 1HBZA 3E4YA 1H7KA 3PQ6A 1P7YA 4QOMA 1P7ZA 4B7HA 4B7GA 1NM0A 1QWMA 4AUNA 1DGHA 3RE8A 8CATA 4ENUA 3PQ3A 4BLCA 4CABA 1DGFA 1E93A 5GKNA 2XQ1A 3PQ5A 3P9QA 4ENSA 2A9EA 1A4EA 1U5UA 4B2YA 4BIMA 1TGUA 2IUFA 1DGBA 3RGPA 3PQ8A 1M85A 4QOLA 1SI8A 4B7AA 3ZJ5A
chains in the Genus database with same CATH topology
2XF2A 1P80A 2CAGA 4QONA 2ISAA 2CAHA 3DY5A 3HB6A 3PQ2A 4QOQA 4E37A 1CF9A 1GGEA 1GG9A 3P9PA 3TTTA 1H6NA 4B31A 3PQ7A 4ENPA 4AUMA 1QWLA 2IQFA 3TTUA 1QF7A 4AUEA 4ENTA 1M7SA 3PQ4A 4ENRA 4QOPA 3TTXA 3TTVA 4ENQA 1GWFA 1F4JA 3EJ6A 1GWHA 1GGHA 1IPHA 3VU3A 1GGJA 4QORA 4ENWA 1MQFA 5BV2P 4AJ9A 4ENVA 1GWEA 3ZJ4A 4B40A 4AULA 1GGFA 4QOOA 2J2MA 3P9SA 1GGKA 3TTWA 4B5KA 1P81A 4BFLA 1SY7A 3P9RA 1QWSA 1HBZA 3PQ6A 1H7KA 1P7YA 4QOMA 1P7ZA 1NM0A 1QWMA 4AUNA 4ENUA 3PQ3A 4CABA 1E93A 2XQ1A 3PQ5A 3P9QA 4ENSA 2A9EA 1A4EA 1U5UA 4B2YA 4BIMA 2IUFA 3PQ8A 1M85A 4QOLA 1SI8A 4B7AA 3ZJ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XF2 A;  1P80 A;  2CAG A;  4QON A;  2ISA A;  2CAH A;  3DY5 A;  3HB6 A;  3PQ2 A;  4QOQ A;  4E37 A;  1CF9 A;  1GGE A;  1GG9 A;  3P9P A;  3TTT A;  1H6N A;  4B31 A;  3PQ7 A;  4ENP A;  4AUM A;  1QWL A;  2IQF A;  3TTU A;  1QF7 A;  4AUE A;  4ENT A;  1M7S A;  3PQ4 A;  4ENR A;  4QOP A;  3TTX A;  3TTV A;  4ENQ A;  1GWF A;  1F4J A;  3EJ6 A;  1GWH A;  1GGH A;  1IPH A;  3VU3 A;  1GGJ A;  4QOR A;  4ENW A;  1MQF A;  5BV2 P;  4AJ9 A;  4ENV A;  1GWE A;  3ZJ4 A;  4B40 A;  4AUL A;  1GGF A;  4QOO A;  2J2M A;  3P9S A;  1GGK A;  3TTW A;  4B5K A;  1P81 A;  4BFL A;  1SY7 A;  3P9R A;  1QWS A;  1HBZ A;  3PQ6 A;  1H7K A;  1P7Y A;  4QOM A;  1P7Z A;  1NM0 A;  1QWM A;  4AUN A;  4ENU A;  3PQ3 A;  4CAB A;  1E93 A;  2XQ1 A;  3PQ5 A;  3P9Q A;  4ENS A;  2A9E A;  1A4E A;  1U5U A;  4B2Y A;  4BIM A;  2IUF A;  3PQ8 A;  1M85 A;  4QOL A;  1SI8 A;  4B7A A;  3ZJ5 A; 
#chains in the Genus database with same CATH topology
 1TH2 A;  2XF2 A;  1P80 A;  2CAG A;  4QON A;  2ISA A;  2CAH A;  1DGG A;  3DY5 A;  1DGH B;  3HB6 A;  3PQ2 A;  4QOQ A;  4E37 A;  1CF9 A;  1GGE A;  1GG9 A;  3P9P A;  3TTT A;  1TH4 A;  1H6N A;  4B31 A;  3PQ7 A;  4ENP A;  4AUM A;  1QWL A;  2IQF A;  3TTU A;  1QF7 A;  7CAT A;  4AUE A;  4ENT A;  1M7S A;  1QQW A;  3PQ4 A;  4ENR A;  4QOP A;  3TTX A;  3TTV A;  4ENQ A;  1GWF A;  1F4J A;  3EJ6 A;  1GWH A;  1GGH A;  1IPH A;  3VU3 A;  1GGJ A;  3J7B A;  4QOR A;  4ENW A;  3E4W A;  1MQF A;  3RGS A;  5BV2 P;  4AJ9 A;  4ENV A;  1GWE A;  3ZJ4 A;  3NWL A;  4B40 A;  1TH3 A;  4AUL A;  1GGF A;  4QOO A;  2J2M A;  3P9S A;  1GGK A;  3TTW A;  4B5K A;  1P81 A;  4BFL A;  1SY7 A;  3P9R A;  1QWS A;  4B7F A;  1HBZ A;  3E4Y A;  1H7K A;  3PQ6 A;  1P7Y A;  4QOM A;  1P7Z A;  4B7H A;  4B7G A;  1NM0 A;  1QWM A;  4AUN A;  1DGH A;  3RE8 A;  8CAT A;  4ENU A;  3PQ3 A;  4BLC A;  4CAB A;  1DGF A;  1E93 A;  5GKN A;  2XQ1 A;  3PQ5 A;  3P9Q A;  4ENS A;  2A9E A;  1A4E A;  1U5U A;  4B2Y A;  4BIM A;  1TGU A;  2IUF A;  1DGB A;  3RGP A;  3PQ8 A;  1M85 A;  4QOL A;  1SI8 A;  4B7A A;  3ZJ5 A; 
#chains in the Genus database with same CATH homology
 2XF2 A;  1P80 A;  2CAG A;  4QON A;  2ISA A;  2CAH A;  3DY5 A;  3HB6 A;  3PQ2 A;  4QOQ A;  4E37 A;  1CF9 A;  1GGE A;  1GG9 A;  3P9P A;  3TTT A;  1H6N A;  4B31 A;  3PQ7 A;  4ENP A;  4AUM A;  1QWL A;  2IQF A;  3TTU A;  1QF7 A;  4AUE A;  4ENT A;  1M7S A;  3PQ4 A;  4ENR A;  4QOP A;  3TTX A;  3TTV A;  4ENQ A;  1GWF A;  1F4J A;  3EJ6 A;  1GWH A;  1GGH A;  1IPH A;  3VU3 A;  1GGJ A;  4QOR A;  4ENW A;  1MQF A;  5BV2 P;  4AJ9 A;  4ENV A;  1GWE A;  3ZJ4 A;  4B40 A;  4AUL A;  1GGF A;  4QOO A;  2J2M A;  3P9S A;  1GGK A;  3TTW A;  4B5K A;  1P81 A;  4BFL A;  1SY7 A;  3P9R A;  1QWS A;  1HBZ A;  3PQ6 A;  1H7K A;  1P7Y A;  4QOM A;  1P7Z A;  1NM0 A;  1QWM A;  4AUN A;  4ENU A;  3PQ3 A;  4CAB A;  1E93 A;  2XQ1 A;  3PQ5 A;  3P9Q A;  4ENS A;  2A9E A;  1A4E A;  1U5U A;  4B2Y A;  4BIM A;  2IUF A;  3PQ8 A;  1M85 A;  4QOL A;  1SI8 A;  4B7A A;  3ZJ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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