1NRGA

Structure and properties of recombinant human pyridoxine-5'-phosphate oxidase
Total Genus 57
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
213
structure length
213
Chain Sequence
EETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
molecule keywords pyridoxine 5'-phosphate oxidase
publication title Structure and properties of recombinant human pyridoxine 5'-phosphate oxidase.
pubmed doi rcsb
source organism Homo sapiens
total genus 57
structure length 213
sequence length 213
ec nomenclature ec 1.4.3.5: Pyridoxal 5'-phosphate synthase.
pdb deposition date 2003-01-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
A PF10590 PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 1nrgA00
3R5WA 2QCKA 3H96A 3K86A 5ESCA 2ARZA 2HTIA 1WLKA 1W9AA 3A6RA 1G79A 2RE7A 2HQ7A 3TGVA 1VL7A 1RZ0A 1JNWA 1DNLA 2PTFA 4YBNA 3VY2A 4N7RC 4HMTA 3U5WA 3AMFA 2RDEA 3ZOHA 3EC6A 2I51A 1CI0A 1YLNA 2I02A 2D38A 3A6QA 4XHYA 1I0RA 1FLMA 4HMSA 2X1JA 3R5YA 3F7EA 2E83A 3AWHA 3U35A 2QEAA 2D37A 4IRAA 1AXJA 1WLIA 3DB0A 2ASFA 1USFA 2OU5A 4R82A 2OL5A 3ZOFA 1T9MA 2IG6A 4YWNA 3ZODA 2ED4A 4ZKYA 3IN6A 4QVBA 4HMWA 4L82A 2FHQA 3NFWA 2Q9KA 4Y9IA 3FGEA 4Z85A 2HQ9A 4HX6A 3CB0A 5JABA 3BNKA 3B5MA 1W3PA 4HMUA 2NR4A 3BA3A 1WGBA 3K88A 2IABA 3RH7A 3CP3A 3R5ZA 2ECUA 3SWJA 5CHOA 1EJEA 1RZ1A 5BNCA 2GJGA 3VYAA 3FKHA 1XXOA 1RFEA 2A2JA 3BPKA 2FURA 2HTDA 1XHNA 2R0XA 4HMXA 3HMZA 2FG9A 2ECRA 3DMBA 3R5RA 1W3RA 3KYFA 1W3OA 3ZOCA 3GASA 3DNHA 2AQ6A 1YOAA 1Y30A 2HHZA 2IMLA 1G76A 2VPAA 3U34A 3R5PA 2X1KA 3HY8A 3A20A 4F07A 3E4VA 1G77A 1NRGA 1W3QA 1G78A 2D36A 2D5MA 2R6VA 3K87A 3KYGA 3PFTA 3U0IA 3VY5A 1USCA 4XJ2A 1TY9A 1I0SA 1WV4A 5CHEC 3ZOGA 4HMVA 3ZOEA 3R5LA
chains in the Genus database with same CATH superfamily
3HE1A 2QCKA 3R5WA 3H96A 3K86A 4MTKA 5ESCA 2ARZA 2HTIA 1WLKA 1W9AA 3A6RA 1G79A 2RE7A 2HQ7A 3TGVA 4UHVA 1VL7A 1RZ0A 1JNWA 1DNLA 2PTFA 4YBNA 3VY2A 4N7RC 4HMTA 3U5WA 3AMFA 2RDEA 3ZOHA 3V4HA 3EC6A 2I51A 1CI0A 1YLNA 2I02A 2D38A 3A6QA 4XHYA 2L1TA 2P5ZX 1I0RA 1FLMA 4HMSA 2X1JA 3R5YA 3F7EA 2E83A 3AWHA 3U35A 2QEAA 2D37A 4IRAA 1AXJA 1WLIA 3DB0A 2ASFA 1USFA 2OU5A 4R82A 2OL5A 3ZOFA 1T9MA 3EAAA 2IG6A 4YWNA 3ZODA 2ED4A 4ZKYA 3IN6A 4QVBA 2K4QA 4HMWA 4L82A 2FHQA 2GUJA 3NFWA 2Q9KA 4Y9IA 3FGEA 4Z85A 2HQ9A 4HX6A 1Y12A 3CB0A 5JABA 3BNKA 3B5MA 1W3PA 4HMUA 2NR4A 3BA3A 4TV4A 1WGBA 3K88A 2IABA 3RH7A 3CP3A 3R5ZA 2ECUA 3SWJA 4HKHA 5CHOA 1EJEA 1RZ1A 5BNCA 2GJGA 3VYAA 3FKHA 1XXOA 1RFEA 2A2JA 3BPKA 2FURA 2HTDA 2R0XA 1XHNA 4HMXA 3HMZA 2FG9A 2ECRA 3DMBA 3R5RA 1W3RA 3KYFA 1W3OA 3ZOCA 3GASA 3DNHA 2AQ6A 1YOAA 1Y30A 2HHZA 2IMLA 1G76A 2VPAA 3U34A 3R5PA 2X1KA 3HY8A 3A20A 4F07A 3E4VA 1G77A 1NRGA 1W3QA 1G78A 2D36A 2D5MA 2R6VA 3K87A 3KYGA 3PFTA 4W64A 3U0IA 3VY5A 1USCA 4XJ2A 1TY9A 1I0SA 1WV4A 5CHEC 3ZOGA 4HMVA 3ZOEA 3R5LA
chains in the Genus database with same CATH topology
3R5WA 2QCKA 3H96A 3K86A 5ESCA 2ARZA 2HTIA 1WLKA 1W9AA 3A6RA 1G79A 2RE7A 2HQ7A 3TGVA 1VL7A 1RZ0A 1JNWA 1DNLA 2PTFA 4YBNA 3VY2A 4N7RC 4HMTA 3U5WA 3AMFA 2RDEA 3ZOHA 3EC6A 2I51A 1CI0A 1YLNA 2I02A 2D38A 3A6QA 4XHYA 1I0RA 1FLMA 4HMSA 2X1JA 3R5YA 3F7EA 2E83A 3AWHA 3U35A 2QEAA 2D37A 4IRAA 1AXJA 1WLIA 3DB0A 2ASFA 1USFA 2OU5A 4R82A 2OL5A 3ZOFA 1T9MA 2IG6A 4YWNA 3ZODA 2ED4A 4ZKYA 3IN6A 4QVBA 4HMWA 4L82A 2FHQA 3NFWA 2Q9KA 4Y9IA 3FGEA 4Z85A 2HQ9A 4HX6A 3CB0A 5JABA 3BNKA 3B5MA 1W3PA 4HMUA 2NR4A 3BA3A 1WGBA 3K88A 2IABA 3RH7A 3CP3A 3R5ZA 2ECUA 3SWJA 5CHOA 1EJEA 1RZ1A 5BNCA 2GJGA 3VYAA 3FKHA 1XXOA 1RFEA 2A2JA 3BPKA 2FURA 2HTDA 1XHNA 2R0XA 4HMXA 3HMZA 2FG9A 2ECRA 3DMBA 3R5RA 1W3RA 3KYFA 1W3OA 3ZOCA 3GASA 3DNHA 2AQ6A 1YOAA 1Y30A 2HHZA 2IMLA 1G76A 2VPAA 3U34A 3R5PA 2X1KA 3HY8A 3A20A 4F07A 3E4VA 1G77A 1NRGA 1W3QA 1G78A 2D36A 2D5MA 2R6VA 3K87A 3KYGA 3PFTA 3U0IA 3VY5A 1USCA 4XJ2A 1TY9A 1I0SA 1WV4A 5CHEC 3ZOGA 4HMVA 3ZOEA 3R5LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R5W A;  2QCK A;  3H96 A;  3K86 A;  5ESC A;  2ARZ A;  2HTI A;  1WLK A;  1W9A A;  3A6R A;  1G79 A;  2RE7 A;  2HQ7 A;  3TGV A;  1VL7 A;  1RZ0 A;  1JNW A;  1DNL A;  2PTF A;  4YBN A;  3VY2 A;  4N7R C;  4HMT A;  3U5W A;  3AMF A;  2RDE A;  3ZOH A;  3EC6 A;  2I51 A;  1CI0 A;  1YLN A;  2I02 A;  2D38 A;  3A6Q A;  4XHY A;  1I0R A;  1FLM A;  4HMS A;  2X1J A;  3R5Y A;  3F7E A;  2E83 A;  3AWH A;  3U35 A;  2QEA A;  2D37 A;  4IRA A;  1AXJ A;  1WLI A;  3DB0 A;  2ASF A;  1USF A;  2OU5 A;  4R82 A;  2OL5 A;  3ZOF A;  1T9M A;  2IG6 A;  4YWN A;  3ZOD A;  2ED4 A;  4ZKY A;  3IN6 A;  4QVB A;  4HMW A;  4L82 A;  2FHQ A;  3NFW A;  2Q9K A;  4Y9I A;  3FGE A;  4Z85 A;  2HQ9 A;  4HX6 A;  3CB0 A;  5JAB A;  3BNK A;  3B5M A;  1W3P A;  4HMU A;  2NR4 A;  3BA3 A;  1WGB A;  3K88 A;  2IAB A;  3RH7 A;  3CP3 A;  3R5Z A;  2ECU A;  3SWJ A;  5CHO A;  1EJE A;  1RZ1 A;  5BNC A;  2GJG A;  3VYA A;  3FKH A;  1XXO A;  1RFE A;  2A2J A;  3BPK A;  2FUR A;  2HTD A;  1XHN A;  2R0X A;  4HMX A;  3HMZ A;  2FG9 A;  2ECR A;  3DMB A;  3R5R A;  1W3R A;  3KYF A;  1W3O A;  3ZOC A;  3GAS A;  3DNH A;  2AQ6 A;  1YOA A;  1Y30 A;  2HHZ A;  2IML A;  1G76 A;  2VPA A;  3U34 A;  3R5P A;  2X1K A;  3HY8 A;  3A20 A;  4F07 A;  3E4V A;  1G77 A;  1NRG A;  1W3Q A;  1G78 A;  2D36 A;  2D5M A;  2R6V A;  3K87 A;  3KYG A;  3PFT A;  3U0I A;  3VY5 A;  1USC A;  4XJ2 A;  1TY9 A;  1I0S A;  1WV4 A;  5CHE C;  3ZOG A;  4HMV A;  3ZOE A;  3R5L A; 
#chains in the Genus database with same CATH topology
 3HE1 A;  2QCK A;  3R5W A;  3H96 A;  3K86 A;  4MTK A;  5ESC A;  2ARZ A;  2HTI A;  1WLK A;  1W9A A;  3A6R A;  1G79 A;  2RE7 A;  2HQ7 A;  3TGV A;  4UHV A;  1VL7 A;  1RZ0 A;  1JNW A;  1DNL A;  2PTF A;  4YBN A;  3VY2 A;  4N7R C;  4HMT A;  3U5W A;  3AMF A;  2RDE A;  3ZOH A;  3V4H A;  3EC6 A;  2I51 A;  1CI0 A;  1YLN A;  2I02 A;  2D38 A;  3A6Q A;  4XHY A;  2L1T A;  2P5Z X;  1I0R A;  1FLM A;  4HMS A;  2X1J A;  3R5Y A;  3F7E A;  2E83 A;  3AWH A;  3U35 A;  2QEA A;  2D37 A;  4IRA A;  1AXJ A;  1WLI A;  3DB0 A;  2ASF A;  1USF A;  2OU5 A;  4R82 A;  2OL5 A;  3ZOF A;  1T9M A;  3EAA A;  2IG6 A;  4YWN A;  3ZOD A;  2ED4 A;  4ZKY A;  3IN6 A;  4QVB A;  2K4Q A;  4HMW A;  4L82 A;  2FHQ A;  2GUJ A;  3NFW A;  2Q9K A;  4Y9I A;  3FGE A;  4Z85 A;  2HQ9 A;  4HX6 A;  1Y12 A;  3CB0 A;  5JAB A;  3BNK A;  3B5M A;  1W3P A;  4HMU A;  2NR4 A;  3BA3 A;  4TV4 A;  1WGB A;  3K88 A;  2IAB A;  3RH7 A;  3CP3 A;  3R5Z A;  2ECU A;  3SWJ A;  4HKH A;  5CHO A;  1EJE A;  1RZ1 A;  5BNC A;  2GJG A;  3VYA A;  3FKH A;  1XXO A;  1RFE A;  2A2J A;  3BPK A;  2FUR A;  2HTD A;  2R0X A;  1XHN A;  4HMX A;  3HMZ A;  2FG9 A;  2ECR A;  3DMB A;  3R5R A;  1W3R A;  3KYF A;  1W3O A;  3ZOC A;  3GAS A;  3DNH A;  2AQ6 A;  1YOA A;  1Y30 A;  2HHZ A;  2IML A;  1G76 A;  2VPA A;  3U34 A;  3R5P A;  2X1K A;  3HY8 A;  3A20 A;  4F07 A;  3E4V A;  1G77 A;  1NRG A;  1W3Q A;  1G78 A;  2D36 A;  2D5M A;  2R6V A;  3K87 A;  3KYG A;  3PFT A;  4W64 A;  3U0I A;  3VY5 A;  1USC A;  4XJ2 A;  1TY9 A;  1I0S A;  1WV4 A;  5CHE C;  3ZOG A;  4HMV A;  3ZOE A;  3R5L A; 
#chains in the Genus database with same CATH homology
 3R5W A;  2QCK A;  3H96 A;  3K86 A;  5ESC A;  2ARZ A;  2HTI A;  1WLK A;  1W9A A;  3A6R A;  1G79 A;  2RE7 A;  2HQ7 A;  3TGV A;  1VL7 A;  1RZ0 A;  1JNW A;  1DNL A;  2PTF A;  4YBN A;  3VY2 A;  4N7R C;  4HMT A;  3U5W A;  3AMF A;  2RDE A;  3ZOH A;  3EC6 A;  2I51 A;  1CI0 A;  1YLN A;  2I02 A;  2D38 A;  3A6Q A;  4XHY A;  1I0R A;  1FLM A;  4HMS A;  2X1J A;  3R5Y A;  3F7E A;  2E83 A;  3AWH A;  3U35 A;  2QEA A;  2D37 A;  4IRA A;  1AXJ A;  1WLI A;  3DB0 A;  2ASF A;  1USF A;  2OU5 A;  4R82 A;  2OL5 A;  3ZOF A;  1T9M A;  2IG6 A;  4YWN A;  3ZOD A;  2ED4 A;  4ZKY A;  3IN6 A;  4QVB A;  4HMW A;  4L82 A;  2FHQ A;  3NFW A;  2Q9K A;  4Y9I A;  3FGE A;  4Z85 A;  2HQ9 A;  4HX6 A;  3CB0 A;  5JAB A;  3BNK A;  3B5M A;  1W3P A;  4HMU A;  2NR4 A;  3BA3 A;  1WGB A;  3K88 A;  2IAB A;  3RH7 A;  3CP3 A;  3R5Z A;  2ECU A;  3SWJ A;  5CHO A;  1EJE A;  1RZ1 A;  5BNC A;  2GJG A;  3VYA A;  3FKH A;  1XXO A;  1RFE A;  2A2J A;  3BPK A;  2FUR A;  2HTD A;  1XHN A;  2R0X A;  4HMX A;  3HMZ A;  2FG9 A;  2ECR A;  3DMB A;  3R5R A;  1W3R A;  3KYF A;  1W3O A;  3ZOC A;  3GAS A;  3DNH A;  2AQ6 A;  1YOA A;  1Y30 A;  2HHZ A;  2IML A;  1G76 A;  2VPA A;  3U34 A;  3R5P A;  2X1K A;  3HY8 A;  3A20 A;  4F07 A;  3E4V A;  1G77 A;  1NRG A;  1W3Q A;  1G78 A;  2D36 A;  2D5M A;  2R6V A;  3K87 A;  3KYG A;  3PFT A;  3U0I A;  3VY5 A;  1USC A;  4XJ2 A;  1TY9 A;  1I0S A;  1WV4 A;  5CHE C;  3ZOG A;  4HMV A;  3ZOE A;  3R5L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...