1NVWS

Structural evidence for feedback activation by rasgtp of the ras-specific nucleotide exchange factor sos
Total Genus 168
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
481
structure length
469
Chain Sequence
QMRLPSADVYRFAEPDSEENIIFEEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Transforming protein p21/H-RAS-1
publication title Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
pubmed doi rcsb
source organism Homo sapiens
total genus 168
structure length 469
sequence length 481
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00617 RasGEF RasGEF domain
S PF00618 RasGEF_N RasGEF N-terminal motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.840.10 Mainly Alpha Orthogonal Bundle Son of Sevenless (SoS) protein; Chain S, domain 2 Ras guanine-nucleotide exchange factors catalytic domain 1nvwS02
1.20.870.10 Mainly Alpha Up-down Bundle Son of sevenless (SoS) protein; Chain S, domain 1 Son of sevenless (SoS) protein Chain: S domain 1 1nvwS01
4NYIS 4MGKE 4MGIE 3CF6E 4NYMS 1NVVS 2II0A 1XD4A 3T6GA 4URXS 4URYS 1XD2C 4MGZE 4URVS 4US1S 1BKDS 3KSYA 4MH0E 3QXLA 4JGWA 1NVXS 1NVWS 4F7ZA 4US2S 4URZS 4NYJS 4URWS 4MGYE 5CM9A 4URUS 4US0S 3T6AA 2BYVE 5CM8A 1NVUS 4L9MA 2IJES
chains in the Genus database with same CATH superfamily
4NYIS 4MGKE 4MGIE 3CF6E 4NYMS 1NVVS 2II0A 1XD4A 3T6GA 4URXS 4URYS 1XD2C 4MGZE 4URVS 4US1S 1BKDS 3KSYA 4MH0E 3QXLA 4JGWA 1NVXS 1NVWS 4F7ZA 4US2S 4URZS 4NYJS 4URWS 4MGYE 5CM9A 4URUS 4US0S 3T6AA 2BYVE 5CM8A 1NVUS 4L9MA 2IJES
chains in the Genus database with same CATH topology
4NYIS 4MGKE 4MGIE 3CF6E 4NYMS 1NVVS 2II0A 1XD4A 3T6GA 4URXS 4URYS 1XD2C 4MGZE 4URVS 4US1S 1BKDS 3KSYA 4MH0E 3QXLA 4JGWA 1NVXS 1NVWS 4F7ZA 4US2S 4URZS 4NYJS 4URWS 4MGYE 5CM9A 4URUS 4US0S 3T6AA 2BYVE 5CM8A 1NVUS 4L9MA 2IJES
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NYI S;  4MGK E;  4MGI E;  3CF6 E;  4NYM S;  1NVV S;  2II0 A;  1XD4 A;  3T6G A;  4URX S;  4URY S;  1XD2 C;  4MGZ E;  4URV S;  4US1 S;  1BKD S;  3KSY A;  4MH0 E;  3QXL A;  4JGW A;  1NVX S;  1NVW S;  4F7Z A;  4US2 S;  4URZ S;  4NYJ S;  4URW S;  4MGY E;  5CM9 A;  4URU S;  4US0 S;  3T6A A;  2BYV E;  5CM8 A;  1NVU S;  4L9M A;  2IJE S; 
#chains in the Genus database with same CATH topology
 4NYI S;  4MGK E;  4MGI E;  3CF6 E;  4NYM S;  1NVV S;  2II0 A;  1XD4 A;  3T6G A;  4URX S;  4URY S;  1XD2 C;  4MGZ E;  4URV S;  4US1 S;  1BKD S;  3KSY A;  4MH0 E;  3QXL A;  4JGW A;  1NVX S;  1NVW S;  4F7Z A;  4US2 S;  4URZ S;  4NYJ S;  4URW S;  4MGY E;  5CM9 A;  4URU S;  4US0 S;  3T6A A;  2BYV E;  5CM8 A;  1NVU S;  4L9M A;  2IJE S; 
#chains in the Genus database with same CATH homology
 4NYI S;  4MGK E;  4MGI E;  3CF6 E;  4NYM S;  1NVV S;  2II0 A;  1XD4 A;  3T6G A;  4URX S;  4URY S;  1XD2 C;  4MGZ E;  4URV S;  4US1 S;  1BKD S;  3KSY A;  4MH0 E;  3QXL A;  4JGW A;  1NVX S;  1NVW S;  4F7Z A;  4US2 S;  4URZ S;  4NYJ S;  4URW S;  4MGY E;  5CM9 A;  4URU S;  4US0 S;  3T6A A;  2BYV E;  5CM8 A;  1NVU S;  4L9M A;  2IJE S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...