1NVWS

Structural evidence for feedback activation by rasgtp of the ras-specific nucleotide exchange factor sos
Total Genus 168
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
481
structure length
469
Chain Sequence
QMRLPSADVYRFAEPDSEENIIFEEGIPIIKAGTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPEPTEADRIAIENGDQPLSAELKRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIAHNITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSNPR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Transforming protein p21/H-RAS-1
publication title Structural evidence for feedback activation by RasGTP of the Ras-specific nucleotide exchange factor SOS
pubmed doi rcsb
source organism Homo sapiens
total genus 168
structure length 469
sequence length 481
ec nomenclature
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00617 RasGEF RasGEF domain
S PF00618 RasGEF_N RasGEF N-terminal motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.840.10 Mainly Alpha Orthogonal Bundle Son of Sevenless (SoS) protein; Chain S, domain 2 Ras guanine-nucleotide exchange factors catalytic domain 1nvwS02
1.20.870.10 Mainly Alpha Up-down Bundle Son of sevenless (SoS) protein; Chain S, domain 1 Son of sevenless (SoS) protein Chain: S domain 1 1nvwS01
5CM9A 4US1S 4URZS 3T6GA 4F7ZA 4URYS 1NVUS 2BYVE 2II0A 3QXLA 5CM8A 4NYIS 4MGIE 4URWS 3KSYA 4L9MA 4MGYE 4JGWA 1BKDS 4MGKE 4MGZE 4URUS 2IJES 4NYJS 1NVVS 1NVXS 1XD2C 4URXS 3CF6E 4MH0E 1NVWS 1XD4A 4US0S 4US2S 4URVS 4NYMS 3T6AA
chains in the Genus database with same CATH superfamily
5CM9A 4US1S 4URZS 3T6GA 4F7ZA 4URYS 1NVUS 2BYVE 2II0A 3QXLA 5CM8A 4NYIS 4MGIE 4URWS 3KSYA 4L9MA 4MGYE 4JGWA 1BKDS 4MGKE 4MGZE 4URUS 2IJES 4NYJS 1NVVS 1NVXS 1XD2C 4URXS 3CF6E 4MH0E 1NVWS 1XD4A 4US0S 4US2S 4URVS 4NYMS 3T6AA
chains in the Genus database with same CATH topology
5CM9A 4US1S 4URZS 3T6GA 4F7ZA 4URYS 1NVUS 2BYVE 2II0A 3QXLA 5CM8A 4NYIS 4MGIE 4URWS 3KSYA 4L9MA 4MGYE 4JGWA 1BKDS 4MGKE 4MGZE 4URUS 2IJES 4NYJS 1NVVS 1NVXS 1XD2C 4URXS 3CF6E 4MH0E 1NVWS 1XD4A 4US0S 4US2S 4URVS 4NYMS 3T6AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CM9 A;  4US1 S;  4URZ S;  3T6G A;  4F7Z A;  4URY S;  1NVU S;  2BYV E;  2II0 A;  3QXL A;  5CM8 A;  4NYI S;  4MGI E;  4URW S;  3KSY A;  4L9M A;  4MGY E;  4JGW A;  1BKD S;  4MGK E;  4MGZ E;  4URU S;  2IJE S;  4NYJ S;  1NVV S;  1NVX S;  1XD2 C;  4URX S;  3CF6 E;  4MH0 E;  1NVW S;  1XD4 A;  4US0 S;  4US2 S;  4URV S;  4NYM S;  3T6A A; 
#chains in the Genus database with same CATH topology
 5CM9 A;  4US1 S;  4URZ S;  3T6G A;  4F7Z A;  4URY S;  1NVU S;  2BYV E;  2II0 A;  3QXL A;  5CM8 A;  4NYI S;  4MGI E;  4URW S;  3KSY A;  4L9M A;  4MGY E;  4JGW A;  1BKD S;  4MGK E;  4MGZ E;  4URU S;  2IJE S;  4NYJ S;  1NVV S;  1NVX S;  1XD2 C;  4URX S;  3CF6 E;  4MH0 E;  1NVW S;  1XD4 A;  4US0 S;  4US2 S;  4URV S;  4NYM S;  3T6A A; 
#chains in the Genus database with same CATH homology
 5CM9 A;  4US1 S;  4URZ S;  3T6G A;  4F7Z A;  4URY S;  1NVU S;  2BYV E;  2II0 A;  3QXL A;  5CM8 A;  4NYI S;  4MGI E;  4URW S;  3KSY A;  4L9M A;  4MGY E;  4JGW A;  1BKD S;  4MGK E;  4MGZ E;  4URU S;  2IJE S;  4NYJ S;  1NVV S;  1NVX S;  1XD2 C;  4URX S;  3CF6 E;  4MH0 E;  1NVW S;  1XD4 A;  4US0 S;  4US2 S;  4URV S;  4NYM S;  3T6A A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...