1O67A

Crystal structure of an hypothetical protein
Total Genus 58
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
233
structure length
214
Chain Sequence
FLVEREQMRYPVDVYTGKAKIQVDGELMLTELGLEGDEGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGDIFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPLELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGKEG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein yiiM
publication title Structural analysis of a set of proteins resulting from a bacterial genomics project
pubmed doi rcsb
source organism Escherichia coli
total genus 58
structure length 214
sequence length 233
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2003-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03473 MOSC MOSC domain
A PF03475 3-alpha 3-alpha domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.33.20 Mainly Beta Beta Barrel M1 Pyruvate Kinase; Domain 3 PK beta-barrel domain-like 1o67A00
1O67A 1ORUA 1O65A
chains in the Genus database with same CATH superfamily
1A49A 3N25A 4IMAA 1A3WA 4QG8A 4G1NA 2F9HA 3U2ZA 4FXFA 2VGIA 3QV7A 1O67A 1E0TA 1PKLA 3SRKA 4B2DA 4IP7A 3IS4A 3HQOA 3HQPA 1F3XA 3E0WA 2VGGA 3BJFA 3KHDA 1A3XA 4FXJA 4WJ8A 3SRDA 3GG8A 3G2GA 3EOEA 1ZJHA 3SRHA 3SRFA 4QG9A 1O65A 3QTGA 3T05A 2VGFA 3KTXA 4YJ5A 3H6OA 3T07A 2VGBA 3T0TA 4B2DD 3ME3A 4DRSA 3QV9A 1PKYA 1PKNA 3HQNA 4QGCA 1T5AA 3QV6A 3BJTA 1AQFA 3GR4A 1E0UA 1F3WA 2E28A 2G50A 3MA8A 4JPGA 3E0VA 1A5UA 3GQYA 3PP7A 1PKMA 1ORUA
chains in the Genus database with same CATH topology
1A49A 3N25A 4IMAA 1A3WA 4QG8A 4G1NA 3U2ZA 4FXFA 2VGIA 3QV7A 1O67A 1E0TA 1PKLA 3SRKA 4B2DA 4IP7A 3IS4A 3HQOA 3HQPA 1F3XA 3E0WA 2VGGA 3BJFA 3KHDA 1A3XA 4FXJA 4WJ8A 3SRDA 3GG8A 3G2GA 3EOEA 1ZJHA 3SRHA 3SRFA 4QG9A 1O65A 3QTGA 3T05A 2VGFA 3KTXA 4YJ5A 3H6OA 3T07A 2VGBA 3T0TA 4B2DD 3ME3A 4DRSA 3QV9A 1PKYA 1PKNA 3HQNA 4QGCA 1T5AA 3QV6A 3BJTA 1AQFA 3GR4A 1E0UA 1F3WA 2E28A 2G50A 3MA8A 4JPGA 3E0VA 1A5UA 3GQYA 3PP7A 1PKMA 1ORUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O67 A;  1ORU A;  1O65 A; 
#chains in the Genus database with same CATH topology
 1A49 A;  3N25 A;  4IMA A;  1A3W A;  4QG8 A;  4G1N A;  2F9H A;  3U2Z A;  4FXF A;  2VGI A;  3QV7 A;  1O67 A;  1E0T A;  1PKL A;  3SRK A;  4B2D A;  4IP7 A;  3IS4 A;  3HQO A;  3HQP A;  1F3X A;  3E0W A;  2VGG A;  3BJF A;  3KHD A;  1A3X A;  4FXJ A;  4WJ8 A;  3SRD A;  3GG8 A;  3G2G A;  3EOE A;  1ZJH A;  3SRH A;  3SRF A;  4QG9 A;  1O65 A;  3QTG A;  3T05 A;  2VGF A;  3KTX A;  4YJ5 A;  3H6O A;  3T07 A;  2VGB A;  3T0T A;  4B2D D;  3ME3 A;  4DRS A;  3QV9 A;  1PKY A;  1PKN A;  3HQN A;  4QGC A;  1T5A A;  3QV6 A;  3BJT A;  1AQF A;  3GR4 A;  1E0U A;  1F3W A;  2E28 A;  2G50 A;  3MA8 A;  4JPG A;  3E0V A;  1A5U A;  3GQY A;  3PP7 A;  1PKM A;  1ORU A; 
#chains in the Genus database with same CATH homology
 1A49 A;  3N25 A;  4IMA A;  1A3W A;  4QG8 A;  4G1N A;  3U2Z A;  4FXF A;  2VGI A;  3QV7 A;  1O67 A;  1E0T A;  1PKL A;  3SRK A;  4B2D A;  4IP7 A;  3IS4 A;  3HQO A;  3HQP A;  1F3X A;  3E0W A;  2VGG A;  3BJF A;  3KHD A;  1A3X A;  4FXJ A;  4WJ8 A;  3SRD A;  3GG8 A;  3G2G A;  3EOE A;  1ZJH A;  3SRH A;  3SRF A;  4QG9 A;  1O65 A;  3QTG A;  3T05 A;  2VGF A;  3KTX A;  4YJ5 A;  3H6O A;  3T07 A;  2VGB A;  3T0T A;  4B2D D;  3ME3 A;  4DRS A;  3QV9 A;  1PKY A;  1PKN A;  3HQN A;  4QGC A;  1T5A A;  3QV6 A;  3BJT A;  1AQF A;  3GR4 A;  1E0U A;  1F3W A;  2E28 A;  2G50 A;  3MA8 A;  4JPG A;  3E0V A;  1A5U A;  3GQY A;  3PP7 A;  1PKM A;  1ORU A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...