1O7PA

Naphthalene 1,2-dioxygenase, product complex
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7pA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7pA01
4NBED 4HM0A 4H13D 1G8JB 1ULIA 2CKFA 4QCKA 3VMGD 3L72E 2BMOA 2DE7A 2IBZE 2HMKA 5AEWA 3GOBA 1Z02A 1UUVA 2DE6A 4NB9A 2NVGA 2BCCE 3GB4A 3H1JE 3L75E 2BMRA 1ZRTE 4HM7A 2QJYC 3VCAA 2DE7D 2YIUC 1SQXE 1O7HA 2B24A 1BE3E 1SQPE 2DE6D 1Z01A 1UUWA 4HM5A 4QDFA 2GBWA 5AEUA 4NB9D 2QPZA 3L70E 1FQTA 1SQVE 1P84E 4OGQD 3H1LE 2XR8A 2NUMA 1NTME 4P1CH 2E74D 2E75D 4H44D 1KB9E 1EG9A 3L73E 4EMJB 3H1HE 4NBAA 3GZYA 1SQQE 5KKZC 2HMNA 4HKVA 4PD4E 5KLVE 3GKQA 3TGUE 3GTSA 2YVJB 1WQLA 3GL2A 2NVEA 3EQQA 4NBHA 1NTKE 1O7NA 2NVFA 4NBAD 3BCCE 2HMOA 1PPJE 1O7WA 2FYNC 2ZYLA 5BOKA 1O7PA 5KLIC 2YFLA 3GZXA 2XRXA 2A06E 4NBHD 2Q3WA 4QUPA 2QJKC 3H1KE 2I7FA 1VM9A 4QDFB 4HM1A 1NDOA 4NBGA 4NBFA 2FYUE 3GKEA 4HM8A 2HMMA 3L71E 4U3FE 3VMIA 1EZVE 4H0LD 5CXMA 1NYKA 2B1XA 1RIEA 3CWBE 2GBXA 2HMJA 4NBGD 1G8KB 4NBFD 2QJPC 3FOUA 3CXHE 4NBCA 4NBDA 3N0QA 3VMID 1JM1A 2JZAA 2YFIA 4HM2A 3GCFA 1ULJA 4QDDA 2NUKA 4NBBA 3C0DA 3GCEA 4HM4A 4QUQA 4P1BH 2D2CD 4NBCD 3EN1A 1Q90C 4NBDD 2JO6A 2NWFA 1VF5D 2HMLA 1NU1E 1PP9E 4NBBD 2BMQA 3D89A 2ZT9D 2XSHA 1L0LE 3VCPA 4NB8A 1VCKA 1SQBE 4AAYB 1O7MA 2E4PA 4HJLA 3GTEA 1BCCE 4PV1D 2E4QA 3CX5E 4QDCA 4HM6A 1WW9A 4HM3A 1Z03A 3VMHA 2DE5A 2E76D 4NB8D 2XSOA 4NBEA 3L74E 4AIVA 1SJGA 3H1IE 3GL0A 1KYOE 1O7GA 4QURA 5HL4A 3AZCA 1L0NE 1NTZE 3DQYA 2YFJA 1RFSA 3VMGA 3VMHD 2DE5D
chains in the Genus database with same CATH superfamily
4NBED 4HM0A 4H13D 1G8JB 1ULIA 2CKFA 4QCKA 3VMGD 3L72E 2BMOA 2DE7A 2IBZE 2HMKA 5AEWA 3GOBA 1Z02A 1UUVA 2DE6A 4NB9A 2NVGA 2BCCE 3GB4A 3H1JE 3L75E 2BMRA 1ZRTE 4HM7A 2QJYC 3VCAA 2DE7D 2YIUC 1SQXE 1O7HA 2B24A 1BE3E 1SQPE 2DE6D 1Z01A 1UUWA 4HM5A 4QDFA 2GBWA 5AEUA 4NB9D 2QPZA 3L70E 1FQTA 1SQVE 1P84E 4OGQD 3H1LE 2XR8A 2NUMA 1NTME 4P1CH 2E74D 2E75D 4H44D 1KB9E 1EG9A 3L73E 4EMJB 3H1HE 4NBAA 3GZYA 1SQQE 5KKZC 2HMNA 4HKVA 4PD4E 5KLVE 3GKQA 3TGUE 3GTSA 2YVJB 1WQLA 3GL2A 2NVEA 3EQQA 4NBHA 1NTKE 1O7NA 2NVFA 4NBAD 3BCCE 2HMOA 1PPJE 1O7WA 2FYNC 2ZYLA 5BOKA 1O7PA 5KLIC 2YFLA 3GZXA 2XRXA 2A06E 4NBHD 2Q3WA 4QUPA 2QJKC 3H1KE 2I7FA 1VM9A 4QDFB 4HM1A 1NDOA 4NBGA 4NBFA 2FYUE 3GKEA 4HM8A 2HMMA 3L71E 4U3FE 3VMIA 1EZVE 4H0LD 5CXMA 1NYKA 2B1XA 1RIEA 3CWBE 2GBXA 2HMJA 4NBGD 1G8KB 4NBFD 2QJPC 3FOUA 3CXHE 4NBCA 4NBDA 3N0QA 3VMID 1JM1A 2JZAA 2YFIA 4HM2A 3GCFA 1ULJA 4QDDA 2NUKA 4NBBA 3C0DA 3GCEA 4HM4A 4QUQA 4P1BH 2D2CD 4NBCD 3EN1A 1Q90C 4NBDD 2JO6A 2NWFA 1VF5D 2HMLA 1NU1E 1PP9E 4NBBD 2BMQA 3D89A 2ZT9D 2XSHA 1L0LE 3VCPA 4NB8A 1VCKA 1SQBE 4AAYB 1O7MA 2E4PA 4HJLA 3GTEA 1BCCE 4PV1D 2E4QA 3CX5E 4QDCA 4HM6A 1WW9A 4HM3A 1Z03A 3VMHA 2DE5A 2E76D 4NB8D 2XSOA 4NBEA 3L74E 4AIVA 1SJGA 3H1IE 3GL0A 1KYOE 1O7GA 4QURA 5HL4A 3AZCA 1L0NE 1NTZE 3DQYA 2YFJA 1RFSA 3VMGA 3VMHD 2DE5D
chains in the Genus database with same CATH topology
4NBED 4HM0A 4H13D 1G8JB 1ULIA 2CKFA 4QCKA 3VMGD 3L72E 2BMOA 2DE7A 2IBZE 2HMKA 5AEWA 3GOBA 1Z02A 1UUVA 2DE6A 4NB9A 2NVGA 2BCCE 3GB4A 3H1JE 3L75E 2BMRA 1ZRTE 4HM7A 2QJYC 3VCAA 2DE7D 2YIUC 1SQXE 1O7HA 2B24A 1BE3E 1SQPE 2DE6D 1Z01A 1UUWA 4HM5A 4QDFA 2GBWA 5AEUA 4NB9D 2QPZA 3L70E 1FQTA 1SQVE 1P84E 4OGQD 3H1LE 2XR8A 2NUMA 1NTME 4P1CH 2E74D 2E75D 4H44D 1KB9E 1EG9A 3L73E 4EMJB 3H1HE 4NBAA 3GZYA 1SQQE 5KKZC 2HMNA 4HKVA 4PD4E 5KLVE 3GKQA 3TGUE 3GTSA 2YVJB 1WQLA 3GL2A 2NVEA 3EQQA 4NBHA 1NTKE 1O7NA 2NVFA 4NBAD 3BCCE 2HMOA 1PPJE 1O7WA 2FYNC 2ZYLA 5BOKA 1O7PA 5KLIC 2YFLA 3GZXA 2XRXA 2A06E 4NBHD 2Q3WA 4QUPA 2QJKC 3H1KE 2I7FA 1VM9A 4QDFB 4HM1A 1NDOA 4NBGA 4NBFA 2FYUE 3GKEA 4HM8A 2HMMA 3L71E 4U3FE 3VMIA 1EZVE 4H0LD 5CXMA 1NYKA 2B1XA 1RIEA 3CWBE 2GBXA 2HMJA 4NBGD 1G8KB 4NBFD 2QJPC 3FOUA 3CXHE 4NBCA 4NBDA 3N0QA 3VMID 1JM1A 2JZAA 2YFIA 4HM2A 3GCFA 1ULJA 4QDDA 2NUKA 4NBBA 3C0DA 3GCEA 4HM4A 4QUQA 4P1BH 2D2CD 4NBCD 3EN1A 1Q90C 4NBDD 2JO6A 2NWFA 1VF5D 2HMLA 1NU1E 1PP9E 4NBBD 2BMQA 3D89A 2ZT9D 2XSHA 1L0LE 3VCPA 4NB8A 1VCKA 1SQBE 4AAYB 1O7MA 2E4PA 4HJLA 3GTEA 1BCCE 4PV1D 2E4QA 3CX5E 4QDCA 4HM6A 1WW9A 4HM3A 1Z03A 3VMHA 2DE5A 2E76D 4NB8D 2XSOA 4NBEA 3L74E 4AIVA 1SJGA 3H1IE 3GL0A 1KYOE 1O7GA 4QURA 5HL4A 3AZCA 1L0NE 1NTZE 3DQYA 2YFJA 1RFSA 3VMGA 3VMHD 2DE5D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NBE D;  4HM0 A;  4H13 D;  1G8J B;  1ULI A;  2CKF A;  4QCK A;  3VMG D;  3L72 E;  2BMO A;  2DE7 A;  2IBZ E;  2HMK A;  5AEW A;  3GOB A;  1Z02 A;  1UUV A;  2DE6 A;  4NB9 A;  2NVG A;  2BCC E;  3GB4 A;  3H1J E;  3L75 E;  2BMR A;  1ZRT E;  4HM7 A;  2QJY C;  3VCA A;  2DE7 D;  2YIU C;  1SQX E;  1O7H A;  2B24 A;  1BE3 E;  1SQP E;  2DE6 D;  1Z01 A;  1UUW A;  4HM5 A;  4QDF A;  2GBW A;  5AEU A;  4NB9 D;  2QPZ A;  3L70 E;  1FQT A;  1SQV E;  1P84 E;  4OGQ D;  3H1L E;  2XR8 A;  2NUM A;  1NTM E;  4P1C H;  2E74 D;  2E75 D;  4H44 D;  1KB9 E;  1EG9 A;  3L73 E;  4EMJ B;  3H1H E;  4NBA A;  3GZY A;  1SQQ E;  5KKZ C;  2HMN A;  4HKV A;  4PD4 E;  5KLV E;  3GKQ A;  3TGU E;  3GTS A;  2YVJ B;  1WQL A;  3GL2 A;  2NVE A;  3EQQ A;  4NBH A;  1NTK E;  1O7N A;  2NVF A;  4NBA D;  3BCC E;  2HMO A;  1PPJ E;  1O7W A;  2FYN C;  2ZYL A;  5BOK A;  1O7P A;  5KLI C;  2YFL A;  3GZX A;  2XRX A;  2A06 E;  4NBH D;  2Q3W A;  4QUP A;  2QJK C;  3H1K E;  2I7F A;  1VM9 A;  4QDF B;  4HM1 A;  1NDO A;  4NBG A;  4NBF A;  2FYU E;  3GKE A;  4HM8 A;  2HMM A;  3L71 E;  4U3F E;  3VMI A;  1EZV E;  4H0L D;  5CXM A;  1NYK A;  2B1X A;  1RIE A;  3CWB E;  2GBX A;  2HMJ A;  4NBG D;  1G8K B;  4NBF D;  2QJP C;  3FOU A;  3CXH E;  4NBC A;  4NBD A;  3N0Q A;  3VMI D;  1JM1 A;  2JZA A;  2YFI A;  4HM2 A;  3GCF A;  1ULJ A;  4QDD A;  2NUK A;  4NBB A;  3C0D A;  3GCE A;  4HM4 A;  4QUQ A;  4P1B H;  2D2C D;  4NBC D;  3EN1 A;  1Q90 C;  4NBD D;  2JO6 A;  2NWF A;  1VF5 D;  2HML A;  1NU1 E;  1PP9 E;  4NBB D;  2BMQ A;  3D89 A;  2ZT9 D;  2XSH A;  1L0L E;  3VCP A;  4NB8 A;  1VCK A;  1SQB E;  4AAY B;  1O7M A;  2E4P A;  4HJL A;  3GTE A;  1BCC E;  4PV1 D;  2E4Q A;  3CX5 E;  4QDC A;  4HM6 A;  1WW9 A;  4HM3 A;  1Z03 A;  3VMH A;  2DE5 A;  2E76 D;  4NB8 D;  2XSO A;  4NBE A;  3L74 E;  4AIV A;  1SJG A;  3H1I E;  3GL0 A;  1KYO E;  1O7G A;  4QUR A;  5HL4 A;  3AZC A;  1L0N E;  1NTZ E;  3DQY A;  2YFJ A;  1RFS A;  3VMG A;  3VMH D;  2DE5 D; 
#chains in the Genus database with same CATH topology
 4NBE D;  4HM0 A;  4H13 D;  1G8J B;  1ULI A;  2CKF A;  4QCK A;  3VMG D;  3L72 E;  2BMO A;  2DE7 A;  2IBZ E;  2HMK A;  5AEW A;  3GOB A;  1Z02 A;  1UUV A;  2DE6 A;  4NB9 A;  2NVG A;  2BCC E;  3GB4 A;  3H1J E;  3L75 E;  2BMR A;  1ZRT E;  4HM7 A;  2QJY C;  3VCA A;  2DE7 D;  2YIU C;  1SQX E;  1O7H A;  2B24 A;  1BE3 E;  1SQP E;  2DE6 D;  1Z01 A;  1UUW A;  4HM5 A;  4QDF A;  2GBW A;  5AEU A;  4NB9 D;  2QPZ A;  3L70 E;  1FQT A;  1SQV E;  1P84 E;  4OGQ D;  3H1L E;  2XR8 A;  2NUM A;  1NTM E;  4P1C H;  2E74 D;  2E75 D;  4H44 D;  1KB9 E;  1EG9 A;  3L73 E;  4EMJ B;  3H1H E;  4NBA A;  3GZY A;  1SQQ E;  5KKZ C;  2HMN A;  4HKV A;  4PD4 E;  5KLV E;  3GKQ A;  3TGU E;  3GTS A;  2YVJ B;  1WQL A;  3GL2 A;  2NVE A;  3EQQ A;  4NBH A;  1NTK E;  1O7N A;  2NVF A;  4NBA D;  3BCC E;  2HMO A;  1PPJ E;  1O7W A;  2FYN C;  2ZYL A;  5BOK A;  1O7P A;  5KLI C;  2YFL A;  3GZX A;  2XRX A;  2A06 E;  4NBH D;  2Q3W A;  4QUP A;  2QJK C;  3H1K E;  2I7F A;  1VM9 A;  4QDF B;  4HM1 A;  1NDO A;  4NBG A;  4NBF A;  2FYU E;  3GKE A;  4HM8 A;  2HMM A;  3L71 E;  4U3F E;  3VMI A;  1EZV E;  4H0L D;  5CXM A;  1NYK A;  2B1X A;  1RIE A;  3CWB E;  2GBX A;  2HMJ A;  4NBG D;  1G8K B;  4NBF D;  2QJP C;  3FOU A;  3CXH E;  4NBC A;  4NBD A;  3N0Q A;  3VMI D;  1JM1 A;  2JZA A;  2YFI A;  4HM2 A;  3GCF A;  1ULJ A;  4QDD A;  2NUK A;  4NBB A;  3C0D A;  3GCE A;  4HM4 A;  4QUQ A;  4P1B H;  2D2C D;  4NBC D;  3EN1 A;  1Q90 C;  4NBD D;  2JO6 A;  2NWF A;  1VF5 D;  2HML A;  1NU1 E;  1PP9 E;  4NBB D;  2BMQ A;  3D89 A;  2ZT9 D;  2XSH A;  1L0L E;  3VCP A;  4NB8 A;  1VCK A;  1SQB E;  4AAY B;  1O7M A;  2E4P A;  4HJL A;  3GTE A;  1BCC E;  4PV1 D;  2E4Q A;  3CX5 E;  4QDC A;  4HM6 A;  1WW9 A;  4HM3 A;  1Z03 A;  3VMH A;  2DE5 A;  2E76 D;  4NB8 D;  2XSO A;  4NBE A;  3L74 E;  4AIV A;  1SJG A;  3H1I E;  3GL0 A;  1KYO E;  1O7G A;  4QUR A;  5HL4 A;  3AZC A;  1L0N E;  1NTZ E;  3DQY A;  2YFJ A;  1RFS A;  3VMG A;  3VMH D;  2DE5 D; 
#chains in the Genus database with same CATH homology
 4NBE D;  4HM0 A;  4H13 D;  1G8J B;  1ULI A;  2CKF A;  4QCK A;  3VMG D;  3L72 E;  2BMO A;  2DE7 A;  2IBZ E;  2HMK A;  5AEW A;  3GOB A;  1Z02 A;  1UUV A;  2DE6 A;  4NB9 A;  2NVG A;  2BCC E;  3GB4 A;  3H1J E;  3L75 E;  2BMR A;  1ZRT E;  4HM7 A;  2QJY C;  3VCA A;  2DE7 D;  2YIU C;  1SQX E;  1O7H A;  2B24 A;  1BE3 E;  1SQP E;  2DE6 D;  1Z01 A;  1UUW A;  4HM5 A;  4QDF A;  2GBW A;  5AEU A;  4NB9 D;  2QPZ A;  3L70 E;  1FQT A;  1SQV E;  1P84 E;  4OGQ D;  3H1L E;  2XR8 A;  2NUM A;  1NTM E;  4P1C H;  2E74 D;  2E75 D;  4H44 D;  1KB9 E;  1EG9 A;  3L73 E;  4EMJ B;  3H1H E;  4NBA A;  3GZY A;  1SQQ E;  5KKZ C;  2HMN A;  4HKV A;  4PD4 E;  5KLV E;  3GKQ A;  3TGU E;  3GTS A;  2YVJ B;  1WQL A;  3GL2 A;  2NVE A;  3EQQ A;  4NBH A;  1NTK E;  1O7N A;  2NVF A;  4NBA D;  3BCC E;  2HMO A;  1PPJ E;  1O7W A;  2FYN C;  2ZYL A;  5BOK A;  1O7P A;  5KLI C;  2YFL A;  3GZX A;  2XRX A;  2A06 E;  4NBH D;  2Q3W A;  4QUP A;  2QJK C;  3H1K E;  2I7F A;  1VM9 A;  4QDF B;  4HM1 A;  1NDO A;  4NBG A;  4NBF A;  2FYU E;  3GKE A;  4HM8 A;  2HMM A;  3L71 E;  4U3F E;  3VMI A;  1EZV E;  4H0L D;  5CXM A;  1NYK A;  2B1X A;  1RIE A;  3CWB E;  2GBX A;  2HMJ A;  4NBG D;  1G8K B;  4NBF D;  2QJP C;  3FOU A;  3CXH E;  4NBC A;  4NBD A;  3N0Q A;  3VMI D;  1JM1 A;  2JZA A;  2YFI A;  4HM2 A;  3GCF A;  1ULJ A;  4QDD A;  2NUK A;  4NBB A;  3C0D A;  3GCE A;  4HM4 A;  4QUQ A;  4P1B H;  2D2C D;  4NBC D;  3EN1 A;  1Q90 C;  4NBD D;  2JO6 A;  2NWF A;  1VF5 D;  2HML A;  1NU1 E;  1PP9 E;  4NBB D;  2BMQ A;  3D89 A;  2ZT9 D;  2XSH A;  1L0L E;  3VCP A;  4NB8 A;  1VCK A;  1SQB E;  4AAY B;  1O7M A;  2E4P A;  4HJL A;  3GTE A;  1BCC E;  4PV1 D;  2E4Q A;  3CX5 E;  4QDC A;  4HM6 A;  1WW9 A;  4HM3 A;  1Z03 A;  3VMH A;  2DE5 A;  2E76 D;  4NB8 D;  2XSO A;  4NBE A;  3L74 E;  4AIV A;  1SJG A;  3H1I E;  3GL0 A;  1KYO E;  1O7G A;  4QUR A;  5HL4 A;  3AZC A;  1L0N E;  1NTZ E;  3DQY A;  2YFJ A;  1RFS A;  3VMG A;  3VMH D;  2DE5 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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