1O7PA

Naphthalene 1,2-dioxygenase, product complex
Total Genus 159
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
447
structure length
447
Chain Sequence
MNYNNKILVSESGLSQKHLIHGDEELFQHELKTIFARNWLFLTHDSLIPAPGDYVTAKMGIDEVIVSRQNDGSIRAFLNVCRHRGKTLVSVEAGNAKGFVCSYHGWGFGSNGELQSVPFEKDLYGESLNKKCLGLKEVARVESFHGFIYGCFDQEAPPLMDYLGDAAWYLEPMFKHSGGLELVGPPGKVVIKANWKAPAENFVGDAYHVGWTHASSLRSGESIFSSLAGNAALPPEGAGLQMTSKYGSGMGVLWDGYSGVHSADLVPELMAFGGAKQERLNKEIGDVRARIYRSHLNCTVFPNNSMLTCSGVFKVWNPIDANTTEVWTYAIVEKDMPEDLKRRLADSVQRTFGPAGFWESDDNDNMETASQNGKKYQSRDSDLLSNLGFGEDVYGDAVYPGVVGKSAIGETSYRGFYRAYQAHVSSSNWAEFEHASSTWHTELTKTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords NAPHTHALENE 1,2-DIOXYGENASE ALPHA SUBUNIT
publication title Crystal Structure of Naphthalene Dioxygenase: Side-on Binding of Dioxygen to Iron
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Oxidoreductase
total genus 159
structure length 447
sequence length 447
ec nomenclature ec 1.14.12.12: Naphthalene 1,2-dioxygenase.
pdb deposition date 2002-11-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00355 Rieske Rieske [2Fe-2S] domain
A PF00848 Ring_hydroxyl_A Ring hydroxylating alpha subunit (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.102.10.10 Mainly Beta 3-layer Sandwich Rieske Iron-sulfur Protein Rieske [2Fe-2S] iron-sulphur domain 1o7pA02
3.90.380.10 Alpha Beta Alpha-Beta Complex Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 1o7pA01
3H1LE 2HMJA 4NBBD 1O7HA 2BMOA 2ZYLA 3L71E 2CKFA 2NVFA 1WW9A 3VMIA 1SQBE 4HJLA 4NBED 3GZXA 3GB4A 1EG9A 3GCEA 3DQYA 1NTME 5KKZC 2YFJA 4P1CH 3TGUE 1O7PA 5KLVE 4HM0A 2XSOA 4HM2A 4QDFB 5AEWA 2GBWA 3L75E 4HM1A 2FYNC 5CXMA 2B24A 1Z03A 2DE6A 2HMMA 1RFSA 1SQXE 3CWBE 2A06E 4HKVA 1L0LE 2HMKA 1P84E 1JM1A 3H1IE 1SQPE 1ULJA 3CXHE 2NVEA 2XRXA 1O7MA 3AZCA 3L74E 2BCCE 3VCPA 1G8JB 2XSHA 4HM8A 4QDFA 4NB8A 2Q3WA 2HMLA 3BCCE 4NBCA 3GTSA 4HM4A 1NTZE 3VCAA 3CX5E 4H13D 3VMGD 1Z02A 3VMHA 2FYUE 3GTEA 2QJKC 4NBGA 1Q90C 4NB9D 2HMOA 4NBHA 1PP9E 3C0DA 4HM7A 1VCKA 2DE7D 3L72E 2YFLA 2DE6D 1BE3E 3H1HE 4H0LD 4NBDA 1O7GA 1O7WA 4QUQA 1L0NE 1ULIA 5BOKA 2JO6A 4HM5A 4NBBA 2IBZE 1KYOE 2JZAA 1FQTA 4NB8D 4OGQD 4NBEA 1SJGA 3VMID 4NBCD 1VF5D 1UUWA 3GKEA 3VMHD 4EMJB 3GZYA 4HM6A 2E74D 4NBFA 4H44D 4QDCA 4NBGD 4QURA 3D89A 2BMRA 3H1KE 1SQQE 5HL4A 2E75D 2NUMA 4P1BH 3N0QA 4QDDA 2QPZA 2YFIA 2NWFA 2YVJB 4NBAA 1NYKA 2QJYC 1BCCE 4PD4E 1EZVE 3GL0A 2DE5A 3GKQA 1PPJE 2B1XA 1NU1E 2I7FA 2D2CD 4AIVA 2E4QA 1UUVA 2QJPC 3FOUA 1G8KB 3VMGA 2E76D 4PV1D 1KB9E 3EQQA 4NBFD 4QUPA 2GBXA 3GOBA 4U3FE 3H1JE 4NB9A 1Z01A 1ZRTE 2XR8A 1O7NA 2HMNA 2DE7A 5KLIC 4QCKA 4NBHD 4AAYB 3EN1A 1WQLA 4NBAD 2NVGA 2BMQA 3L73E 4NBDD 1RIEA 2YIUC 2NUKA 3GCFA 3GL2A 2DE5D 2E4PA 4HM3A 1NDOA 3L70E 2ZT9D 1NTKE 1SQVE 1VM9A 5AEUA
chains in the Genus database with same CATH superfamily
3H1LE 2HMJA 4NBBD 1O7HA 2BMOA 2ZYLA 3L71E 2CKFA 2NVFA 1WW9A 3VMIA 1SQBE 4HJLA 4NBED 3GZXA 3GB4A 1EG9A 3GCEA 3DQYA 1NTME 5KKZC 2YFJA 4P1CH 3TGUE 1O7PA 5KLVE 4HM0A 2XSOA 4HM2A 4QDFB 5AEWA 2GBWA 3L75E 4HM1A 2FYNC 5CXMA 2B24A 1Z03A 2DE6A 2HMMA 1RFSA 1SQXE 3CWBE 2A06E 4HKVA 1L0LE 2HMKA 1P84E 1JM1A 3H1IE 1SQPE 1ULJA 3CXHE 2NVEA 2XRXA 1O7MA 3AZCA 3L74E 2BCCE 3VCPA 1G8JB 2XSHA 4HM8A 4QDFA 4NB8A 2Q3WA 2HMLA 3BCCE 4NBCA 3GTSA 4HM4A 1NTZE 3VCAA 3CX5E 4H13D 3VMGD 1Z02A 3VMHA 2FYUE 3GTEA 2QJKC 4NBGA 1Q90C 4NB9D 2HMOA 4NBHA 1PP9E 3C0DA 4HM7A 1VCKA 2DE7D 3L72E 2YFLA 2DE6D 1BE3E 3H1HE 4H0LD 4NBDA 1O7GA 1O7WA 4QUQA 1L0NE 1ULIA 5BOKA 2JO6A 4HM5A 4NBBA 2IBZE 1KYOE 2JZAA 1FQTA 4NB8D 4OGQD 4NBEA 1SJGA 3VMID 4NBCD 1VF5D 1UUWA 3GKEA 3VMHD 4EMJB 3GZYA 4HM6A 2E74D 4NBFA 4H44D 4QDCA 4NBGD 4QURA 3D89A 2BMRA 3H1KE 1SQQE 5HL4A 2E75D 2NUMA 4P1BH 3N0QA 4QDDA 2QPZA 2YFIA 2NWFA 2YVJB 4NBAA 1NYKA 2QJYC 1BCCE 4PD4E 1EZVE 3GL0A 2DE5A 3GKQA 1PPJE 2B1XA 1NU1E 2I7FA 2D2CD 4AIVA 2E4QA 1UUVA 2QJPC 3FOUA 1G8KB 3VMGA 2E76D 4PV1D 1KB9E 3EQQA 4NBFD 4QUPA 2GBXA 3GOBA 4U3FE 3H1JE 4NB9A 1Z01A 1ZRTE 2XR8A 1O7NA 2HMNA 2DE7A 5KLIC 4QCKA 4NBHD 4AAYB 3EN1A 1WQLA 4NBAD 2NVGA 2BMQA 3L73E 4NBDD 1RIEA 2YIUC 2NUKA 3GCFA 3GL2A 2DE5D 2E4PA 4HM3A 1NDOA 3L70E 2ZT9D 1NTKE 1SQVE 1VM9A 5AEUA
chains in the Genus database with same CATH topology
3H1LE 2HMJA 4NBBD 1O7HA 2BMOA 2ZYLA 3L71E 2CKFA 2NVFA 1WW9A 3VMIA 1SQBE 4HJLA 4NBED 3GZXA 3GB4A 1EG9A 3GCEA 3DQYA 1NTME 5KKZC 2YFJA 4P1CH 3TGUE 1O7PA 5KLVE 4HM0A 2XSOA 4HM2A 4QDFB 5AEWA 2GBWA 3L75E 4HM1A 2FYNC 5CXMA 2B24A 1Z03A 2DE6A 2HMMA 1RFSA 1SQXE 3CWBE 2A06E 4HKVA 1L0LE 2HMKA 1P84E 1JM1A 3H1IE 1SQPE 1ULJA 3CXHE 2NVEA 2XRXA 1O7MA 3AZCA 3L74E 2BCCE 3VCPA 1G8JB 2XSHA 4HM8A 4QDFA 4NB8A 2Q3WA 2HMLA 3BCCE 4NBCA 3GTSA 4HM4A 1NTZE 3VCAA 3CX5E 4H13D 3VMGD 1Z02A 3VMHA 2FYUE 3GTEA 2QJKC 4NBGA 1Q90C 4NB9D 2HMOA 4NBHA 1PP9E 3C0DA 4HM7A 1VCKA 2DE7D 3L72E 2YFLA 2DE6D 1BE3E 3H1HE 4H0LD 4NBDA 1O7GA 1O7WA 4QUQA 1L0NE 1ULIA 5BOKA 2JO6A 4HM5A 4NBBA 2IBZE 1KYOE 2JZAA 1FQTA 4NB8D 4OGQD 4NBEA 1SJGA 3VMID 4NBCD 1VF5D 1UUWA 3GKEA 3VMHD 4EMJB 3GZYA 4HM6A 2E74D 4NBFA 4H44D 4QDCA 4NBGD 4QURA 3D89A 2BMRA 3H1KE 1SQQE 5HL4A 2E75D 2NUMA 4P1BH 3N0QA 4QDDA 2QPZA 2YFIA 2NWFA 2YVJB 4NBAA 1NYKA 2QJYC 1BCCE 4PD4E 1EZVE 3GL0A 2DE5A 3GKQA 1PPJE 2B1XA 1NU1E 2I7FA 2D2CD 4AIVA 2E4QA 1UUVA 2QJPC 3FOUA 1G8KB 3VMGA 2E76D 4PV1D 1KB9E 3EQQA 4NBFD 4QUPA 2GBXA 3GOBA 4U3FE 3H1JE 4NB9A 1Z01A 1ZRTE 2XR8A 1O7NA 2HMNA 2DE7A 5KLIC 4QCKA 4NBHD 4AAYB 3EN1A 1WQLA 4NBAD 2NVGA 2BMQA 3L73E 4NBDD 1RIEA 2YIUC 2NUKA 3GCFA 3GL2A 2DE5D 2E4PA 4HM3A 1NDOA 3L70E 2ZT9D 1NTKE 1SQVE 1VM9A 5AEUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3H1L E;  2HMJ A;  4NBB D;  1O7H A;  2BMO A;  2ZYL A;  3L71 E;  2CKF A;  2NVF A;  1WW9 A;  3VMI A;  1SQB E;  4HJL A;  4NBE D;  3GZX A;  3GB4 A;  1EG9 A;  3GCE A;  3DQY A;  1NTM E;  5KKZ C;  2YFJ A;  4P1C H;  3TGU E;  1O7P A;  5KLV E;  4HM0 A;  2XSO A;  4HM2 A;  4QDF B;  5AEW A;  2GBW A;  3L75 E;  4HM1 A;  2FYN C;  5CXM A;  2B24 A;  1Z03 A;  2DE6 A;  2HMM A;  1RFS A;  1SQX E;  3CWB E;  2A06 E;  4HKV A;  1L0L E;  2HMK A;  1P84 E;  1JM1 A;  3H1I E;  1SQP E;  1ULJ A;  3CXH E;  2NVE A;  2XRX A;  1O7M A;  3AZC A;  3L74 E;  2BCC E;  3VCP A;  1G8J B;  2XSH A;  4HM8 A;  4QDF A;  4NB8 A;  2Q3W A;  2HML A;  3BCC E;  4NBC A;  3GTS A;  4HM4 A;  1NTZ E;  3VCA A;  3CX5 E;  4H13 D;  3VMG D;  1Z02 A;  3VMH A;  2FYU E;  3GTE A;  2QJK C;  4NBG A;  1Q90 C;  4NB9 D;  2HMO A;  4NBH A;  1PP9 E;  3C0D A;  4HM7 A;  1VCK A;  2DE7 D;  3L72 E;  2YFL A;  2DE6 D;  1BE3 E;  3H1H E;  4H0L D;  4NBD A;  1O7G A;  1O7W A;  4QUQ A;  1L0N E;  1ULI A;  5BOK A;  2JO6 A;  4HM5 A;  4NBB A;  2IBZ E;  1KYO E;  2JZA A;  1FQT A;  4NB8 D;  4OGQ D;  4NBE A;  1SJG A;  3VMI D;  4NBC D;  1VF5 D;  1UUW A;  3GKE A;  3VMH D;  4EMJ B;  3GZY A;  4HM6 A;  2E74 D;  4NBF A;  4H44 D;  4QDC A;  4NBG D;  4QUR A;  3D89 A;  2BMR A;  3H1K E;  1SQQ E;  5HL4 A;  2E75 D;  2NUM A;  4P1B H;  3N0Q A;  4QDD A;  2QPZ A;  2YFI A;  2NWF A;  2YVJ B;  4NBA A;  1NYK A;  2QJY C;  1BCC E;  4PD4 E;  1EZV E;  3GL0 A;  2DE5 A;  3GKQ A;  1PPJ E;  2B1X A;  1NU1 E;  2I7F A;  2D2C D;  4AIV A;  2E4Q A;  1UUV A;  2QJP C;  3FOU A;  1G8K B;  3VMG A;  2E76 D;  4PV1 D;  1KB9 E;  3EQQ A;  4NBF D;  4QUP A;  2GBX A;  3GOB A;  4U3F E;  3H1J E;  4NB9 A;  1Z01 A;  1ZRT E;  2XR8 A;  1O7N A;  2HMN A;  2DE7 A;  5KLI C;  4QCK A;  4NBH D;  4AAY B;  3EN1 A;  1WQL A;  4NBA D;  2NVG A;  2BMQ A;  3L73 E;  4NBD D;  1RIE A;  2YIU C;  2NUK A;  3GCF A;  3GL2 A;  2DE5 D;  2E4P A;  4HM3 A;  1NDO A;  3L70 E;  2ZT9 D;  1NTK E;  1SQV E;  1VM9 A;  5AEU A; 
#chains in the Genus database with same CATH topology
 3H1L E;  2HMJ A;  4NBB D;  1O7H A;  2BMO A;  2ZYL A;  3L71 E;  2CKF A;  2NVF A;  1WW9 A;  3VMI A;  1SQB E;  4HJL A;  4NBE D;  3GZX A;  3GB4 A;  1EG9 A;  3GCE A;  3DQY A;  1NTM E;  5KKZ C;  2YFJ A;  4P1C H;  3TGU E;  1O7P A;  5KLV E;  4HM0 A;  2XSO A;  4HM2 A;  4QDF B;  5AEW A;  2GBW A;  3L75 E;  4HM1 A;  2FYN C;  5CXM A;  2B24 A;  1Z03 A;  2DE6 A;  2HMM A;  1RFS A;  1SQX E;  3CWB E;  2A06 E;  4HKV A;  1L0L E;  2HMK A;  1P84 E;  1JM1 A;  3H1I E;  1SQP E;  1ULJ A;  3CXH E;  2NVE A;  2XRX A;  1O7M A;  3AZC A;  3L74 E;  2BCC E;  3VCP A;  1G8J B;  2XSH A;  4HM8 A;  4QDF A;  4NB8 A;  2Q3W A;  2HML A;  3BCC E;  4NBC A;  3GTS A;  4HM4 A;  1NTZ E;  3VCA A;  3CX5 E;  4H13 D;  3VMG D;  1Z02 A;  3VMH A;  2FYU E;  3GTE A;  2QJK C;  4NBG A;  1Q90 C;  4NB9 D;  2HMO A;  4NBH A;  1PP9 E;  3C0D A;  4HM7 A;  1VCK A;  2DE7 D;  3L72 E;  2YFL A;  2DE6 D;  1BE3 E;  3H1H E;  4H0L D;  4NBD A;  1O7G A;  1O7W A;  4QUQ A;  1L0N E;  1ULI A;  5BOK A;  2JO6 A;  4HM5 A;  4NBB A;  2IBZ E;  1KYO E;  2JZA A;  1FQT A;  4NB8 D;  4OGQ D;  4NBE A;  1SJG A;  3VMI D;  4NBC D;  1VF5 D;  1UUW A;  3GKE A;  3VMH D;  4EMJ B;  3GZY A;  4HM6 A;  2E74 D;  4NBF A;  4H44 D;  4QDC A;  4NBG D;  4QUR A;  3D89 A;  2BMR A;  3H1K E;  1SQQ E;  5HL4 A;  2E75 D;  2NUM A;  4P1B H;  3N0Q A;  4QDD A;  2QPZ A;  2YFI A;  2NWF A;  2YVJ B;  4NBA A;  1NYK A;  2QJY C;  1BCC E;  4PD4 E;  1EZV E;  3GL0 A;  2DE5 A;  3GKQ A;  1PPJ E;  2B1X A;  1NU1 E;  2I7F A;  2D2C D;  4AIV A;  2E4Q A;  1UUV A;  2QJP C;  3FOU A;  1G8K B;  3VMG A;  2E76 D;  4PV1 D;  1KB9 E;  3EQQ A;  4NBF D;  4QUP A;  2GBX A;  3GOB A;  4U3F E;  3H1J E;  4NB9 A;  1Z01 A;  1ZRT E;  2XR8 A;  1O7N A;  2HMN A;  2DE7 A;  5KLI C;  4QCK A;  4NBH D;  4AAY B;  3EN1 A;  1WQL A;  4NBA D;  2NVG A;  2BMQ A;  3L73 E;  4NBD D;  1RIE A;  2YIU C;  2NUK A;  3GCF A;  3GL2 A;  2DE5 D;  2E4P A;  4HM3 A;  1NDO A;  3L70 E;  2ZT9 D;  1NTK E;  1SQV E;  1VM9 A;  5AEU A; 
#chains in the Genus database with same CATH homology
 3H1L E;  2HMJ A;  4NBB D;  1O7H A;  2BMO A;  2ZYL A;  3L71 E;  2CKF A;  2NVF A;  1WW9 A;  3VMI A;  1SQB E;  4HJL A;  4NBE D;  3GZX A;  3GB4 A;  1EG9 A;  3GCE A;  3DQY A;  1NTM E;  5KKZ C;  2YFJ A;  4P1C H;  3TGU E;  1O7P A;  5KLV E;  4HM0 A;  2XSO A;  4HM2 A;  4QDF B;  5AEW A;  2GBW A;  3L75 E;  4HM1 A;  2FYN C;  5CXM A;  2B24 A;  1Z03 A;  2DE6 A;  2HMM A;  1RFS A;  1SQX E;  3CWB E;  2A06 E;  4HKV A;  1L0L E;  2HMK A;  1P84 E;  1JM1 A;  3H1I E;  1SQP E;  1ULJ A;  3CXH E;  2NVE A;  2XRX A;  1O7M A;  3AZC A;  3L74 E;  2BCC E;  3VCP A;  1G8J B;  2XSH A;  4HM8 A;  4QDF A;  4NB8 A;  2Q3W A;  2HML A;  3BCC E;  4NBC A;  3GTS A;  4HM4 A;  1NTZ E;  3VCA A;  3CX5 E;  4H13 D;  3VMG D;  1Z02 A;  3VMH A;  2FYU E;  3GTE A;  2QJK C;  4NBG A;  1Q90 C;  4NB9 D;  2HMO A;  4NBH A;  1PP9 E;  3C0D A;  4HM7 A;  1VCK A;  2DE7 D;  3L72 E;  2YFL A;  2DE6 D;  1BE3 E;  3H1H E;  4H0L D;  4NBD A;  1O7G A;  1O7W A;  4QUQ A;  1L0N E;  1ULI A;  5BOK A;  2JO6 A;  4HM5 A;  4NBB A;  2IBZ E;  1KYO E;  2JZA A;  1FQT A;  4NB8 D;  4OGQ D;  4NBE A;  1SJG A;  3VMI D;  4NBC D;  1VF5 D;  1UUW A;  3GKE A;  3VMH D;  4EMJ B;  3GZY A;  4HM6 A;  2E74 D;  4NBF A;  4H44 D;  4QDC A;  4NBG D;  4QUR A;  3D89 A;  2BMR A;  3H1K E;  1SQQ E;  5HL4 A;  2E75 D;  2NUM A;  4P1B H;  3N0Q A;  4QDD A;  2QPZ A;  2YFI A;  2NWF A;  2YVJ B;  4NBA A;  1NYK A;  2QJY C;  1BCC E;  4PD4 E;  1EZV E;  3GL0 A;  2DE5 A;  3GKQ A;  1PPJ E;  2B1X A;  1NU1 E;  2I7F A;  2D2C D;  4AIV A;  2E4Q A;  1UUV A;  2QJP C;  3FOU A;  1G8K B;  3VMG A;  2E76 D;  4PV1 D;  1KB9 E;  3EQQ A;  4NBF D;  4QUP A;  2GBX A;  3GOB A;  4U3F E;  3H1J E;  4NB9 A;  1Z01 A;  1ZRT E;  2XR8 A;  1O7N A;  2HMN A;  2DE7 A;  5KLI C;  4QCK A;  4NBH D;  4AAY B;  3EN1 A;  1WQL A;  4NBA D;  2NVG A;  2BMQ A;  3L73 E;  4NBD D;  1RIE A;  2YIU C;  2NUK A;  3GCF A;  3GL2 A;  2DE5 D;  2E4P A;  4HM3 A;  1NDO A;  3L70 E;  2ZT9 D;  1NTK E;  1SQV E;  1VM9 A;  5AEU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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