1O9AA

Solution structure of the complex of 1f12f1 from fibronectin with b3 from fnbb from s. dysgalactiae
Total Genus 8
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
8
sequence length
93
structure length
93
Chain Sequence
SKPGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCESKPEAEETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords FIBRONECTIN
publication title Pathogenic bacteria attach to human fibronectin through a tandem beta-zipper.
pubmed doi rcsb
source organism Homo sapiens
total genus 8
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2002-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1o9aA02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1o9aA01
1FBRA 4LOTA 1C1ZA 2XWBF 3M7PA 2RKYA 4K12A 2KMSA 2XRBA 3ZD2A 4JHSA 3R62A 4C16A 2XQWC 1VVCA 5HYUB 4J38B 4YNXA 4A5WB 1SRZA 1E8BA 1CKLA 2WIIC 3OEDC 3O8EB 2EC3A 2IZ3A 3T5OA 4KKDA 1GHQB 4LOSA 4PZ5A 1Z92B 2CKUA 4B2SA 3ERBA 1QO6A 4B2RA 2XRDA 1ZJKA 3EJHA 1OJVA 1HFHA 2MCYA 2UWNA 2YBYA 2G7IA 1QGBA 3OP8A 2RL0A 2W80A 3ZD1A 2CG6A 2RLPA 1HFIA 5HZPB 2JGWA 4AYDA 2JRAA 3IU3I 5HYPA 3RJ3D 1PPQA 2IZ4A 2MCZA 1E88A 1GKGA 3INBC 1MD8A 3TVJA 4DJZA 4WJG2 1OK9A 1VVDA 2A55A 3CALA 1E5GA 1H2PP 4AYIA 1G4FA 1U5MA 1OJYA 1NWVA 4AYMA 3ZRZA 2LOJA 1GKNA 1LY2A 2KRIA 1H03P 2XWJI 2BZMA 2YRAA 1OK2A 4FXGG 1QUBA 1OJWA 3SW0X 3GXEA 4F4OC 1UOTP 2RLQA 3KZJA 1TPGA 1TPNA 2JGXA 1TPMA 4AYEA 1H2QP 1OK3A 1MD7A 4ZH1D 1GPZA 3KXVA 4MUCA 5I0QB 5FO8C 1G4GA 1HCCA 3MQLA 2B5ID 2W81A 1ELVA 1SS2A 1Q3XA 3IX0A 3OXUD 5HYTB 4CSYA 2CG7A 5JPMG 1H04P 1OK1A 2EHFA 1O9AA 2QY0A 2V8EA 4ONTD 3GOVA 3L89M 2O39C 2ERJA 2RKZA 3NFPI 4IGDA
chains in the Genus database with same CATH superfamily
1FBRA 4LOTA 1C1ZA 2XWBF 3CI0J 3ZLDA 3M7PA 2RKYA 4K12A 2KMSA 2XRBA 4MSLA 3ZD2A 4JHSA 3R62A 4C16A 2XQWC 1VVCA 5HYUB 4J38B 4YNXA 4A5WB 1SRZA 1E8BA 1CKLA 2I2LA 2WIIC 3OEDC 3O8EB 2EC3A 2IZ3A 3T5OA 4KKDA 3FGTA 1GHQB 4LOSA 4PZ5A 1Z92B 4PO7A 2CKUA 4B2SA 3K3TA 3ERBA 1QO6A 3F6KA 2Y8TA 4B2RA 2XRDA 1ZJKA 3EJHA 1OJVA 5DN5A 1HFHA 2MCYA 2UWNA 2YBYA 2G7IA 1QGBA 3OP8A 2RL0A 2W80A 3ZD1A 2CG6A 2RLPA 1HFIA 5HZPB 2JGWA 4AYDA 2JRAA 3IU3I 5HYPA 3RJ3D 3VWOA 1PPQA 2IZ4A 2MCZA 1E88A 1GKGA 3INBC 1MD8A 3TVJA 4DJZA 4WJG2 1OK9A 1VVDA 2A55A 3CALA 4APLA 1E5GA 1H2PP 4AYIA 2ZYCA 1G4FA 1U5MA 1OJYA 1NWVA 4AYMA 3ZRZA 2LOJA 1GKNA 1LY2A 2KRIA 1H03P 2XWJI 2BZMA 1RLHA 2YRAA 1OK2A 4FXGG 4YIZA 1QUBA 1OJWA 2Y8SA 3NJAA 3SW0X 3GXEA 4BWCA 4F4OC 1UOTP 2RLQA 3KZJA 1TPGA 2X2ZA 1TPNA 2JGXA 1TPMA 4AYEA 1H2QP 1OK3A 1MD7A 4ZH1D 1GPZA 3KXVA 4MUCA 4N7EA 5I0QB 3ZLEA 5FO8C 3WSXA 1G4GA 1HCCA 3MQLA 2B5ID 2W81A 1ELVA 1SS2A 1Q3XA 3IX0A 3OXUD 5HYTB 4CSYA 2CG7A 5JPMG 1H04P 1OK1A 2EHFA 1O9AA 2QY0A 3WSYA 2V8EA 4ONTD 3GOVA 3L89M 5DN4A 2O39C 2ERJA 2RKZA 2Y8RA 3FGRA 3NFPI 4IGDA
chains in the Genus database with same CATH topology
1FBRA 4LOTA 1C1ZA 2XWBF 3M7PA 2RKYA 4K12A 2KMSA 2XRBA 3ZD2A 4JHSA 3R62A 4C16A 2XQWC 1VVCA 5HYUB 4J38B 4YNXA 4A5WB 1SRZA 1E8BA 1CKLA 2WIIC 3OEDC 3O8EB 2EC3A 2IZ3A 3T5OA 4KKDA 1GHQB 4LOSA 4PZ5A 1Z92B 2CKUA 4B2SA 3ERBA 1QO6A 4B2RA 2XRDA 1ZJKA 3EJHA 1OJVA 1HFHA 2MCYA 2UWNA 2YBYA 2G7IA 1QGBA 3OP8A 2RL0A 2W80A 3ZD1A 2CG6A 2RLPA 1HFIA 5HZPB 2JGWA 4AYDA 2JRAA 3IU3I 5HYPA 3RJ3D 1PPQA 2IZ4A 2MCZA 1E88A 1GKGA 3INBC 1MD8A 3TVJA 4DJZA 4WJG2 1OK9A 1VVDA 2A55A 3CALA 1E5GA 1H2PP 4AYIA 1G4FA 1U5MA 1OJYA 1NWVA 4AYMA 3ZRZA 2LOJA 1GKNA 1LY2A 2KRIA 1H03P 2XWJI 2BZMA 2YRAA 1OK2A 4FXGG 1QUBA 1OJWA 3SW0X 3GXEA 4F4OC 1UOTP 2RLQA 3KZJA 1TPGA 1TPNA 2JGXA 1TPMA 4AYEA 1H2QP 1OK3A 1MD7A 4ZH1D 1GPZA 3KXVA 4MUCA 5I0QB 5FO8C 1G4GA 1HCCA 3MQLA 2B5ID 2W81A 1ELVA 1SS2A 1Q3XA 3IX0A 3OXUD 5HYTB 4CSYA 2CG7A 5JPMG 1H04P 1OK1A 2EHFA 1O9AA 2QY0A 2V8EA 4ONTD 3GOVA 3L89M 2O39C 2ERJA 2RKZA 3NFPI 4IGDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FBR A;  4LOT A;  1C1Z A;  2XWB F;  3M7P A;  2RKY A;  4K12 A;  2KMS A;  2XRB A;  3ZD2 A;  4JHS A;  3R62 A;  4C16 A;  2XQW C;  1VVC A;  5HYU B;  4J38 B;  4YNX A;  4A5W B;  1SRZ A;  1E8B A;  1CKL A;  2WII C;  3OED C;  3O8E B;  2EC3 A;  2IZ3 A;  3T5O A;  4KKD A;  1GHQ B;  4LOS A;  4PZ5 A;  1Z92 B;  2CKU A;  4B2S A;  3ERB A;  1QO6 A;  4B2R A;  2XRD A;  1ZJK A;  3EJH A;  1OJV A;  1HFH A;  2MCY A;  2UWN A;  2YBY A;  2G7I A;  1QGB A;  3OP8 A;  2RL0 A;  2W80 A;  3ZD1 A;  2CG6 A;  2RLP A;  1HFI A;  5HZP B;  2JGW A;  4AYD A;  2JRA A;  3IU3 I;  5HYP A;  3RJ3 D;  1PPQ A;  2IZ4 A;  2MCZ A;  1E88 A;  1GKG A;  3INB C;  1MD8 A;  3TVJ A;  4DJZ A;  4WJG 2;  1OK9 A;  1VVD A;  2A55 A;  3CAL A;  1E5G A;  1H2P P;  4AYI A;  1G4F A;  1U5M A;  1OJY A;  1NWV A;  4AYM A;  3ZRZ A;  2LOJ A;  1GKN A;  1LY2 A;  2KRI A;  1H03 P;  2XWJ I;  2BZM A;  2YRA A;  1OK2 A;  4FXG G;  1QUB A;  1OJW A;  3SW0 X;  3GXE A;  4F4O C;  1UOT P;  2RLQ A;  3KZJ A;  1TPG A;  1TPN A;  2JGX A;  1TPM A;  4AYE A;  1H2Q P;  1OK3 A;  1MD7 A;  4ZH1 D;  1GPZ A;  3KXV A;  4MUC A;  5I0Q B;  5FO8 C;  1G4G A;  1HCC A;  3MQL A;  2B5I D;  2W81 A;  1ELV A;  1SS2 A;  1Q3X A;  3IX0 A;  3OXU D;  5HYT B;  4CSY A;  2CG7 A;  5JPM G;  1H04 P;  1OK1 A;  2EHF A;  1O9A A;  2QY0 A;  2V8E A;  4ONT D;  3GOV A;  3L89 M;  2O39 C;  2ERJ A;  2RKZ A;  3NFP I;  4IGD A; 
#chains in the Genus database with same CATH topology
 1FBR A;  4LOT A;  1C1Z A;  2XWB F;  3CI0 J;  3ZLD A;  3M7P A;  2RKY A;  4K12 A;  2KMS A;  2XRB A;  4MSL A;  3ZD2 A;  4JHS A;  3R62 A;  4C16 A;  2XQW C;  1VVC A;  5HYU B;  4J38 B;  4YNX A;  4A5W B;  1SRZ A;  1E8B A;  1CKL A;  2I2L A;  2WII C;  3OED C;  3O8E B;  2EC3 A;  2IZ3 A;  3T5O A;  4KKD A;  3FGT A;  1GHQ B;  4LOS A;  4PZ5 A;  1Z92 B;  4PO7 A;  2CKU A;  4B2S A;  3K3T A;  3ERB A;  1QO6 A;  3F6K A;  2Y8T A;  4B2R A;  2XRD A;  1ZJK A;  3EJH A;  1OJV A;  5DN5 A;  1HFH A;  2MCY A;  2UWN A;  2YBY A;  2G7I A;  1QGB A;  3OP8 A;  2RL0 A;  2W80 A;  3ZD1 A;  2CG6 A;  2RLP A;  1HFI A;  5HZP B;  2JGW A;  4AYD A;  2JRA A;  3IU3 I;  5HYP A;  3RJ3 D;  3VWO A;  1PPQ A;  2IZ4 A;  2MCZ A;  1E88 A;  1GKG A;  3INB C;  1MD8 A;  3TVJ A;  4DJZ A;  4WJG 2;  1OK9 A;  1VVD A;  2A55 A;  3CAL A;  4APL A;  1E5G A;  1H2P P;  4AYI A;  2ZYC A;  1G4F A;  1U5M A;  1OJY A;  1NWV A;  4AYM A;  3ZRZ A;  2LOJ A;  1GKN A;  1LY2 A;  2KRI A;  1H03 P;  2XWJ I;  2BZM A;  1RLH A;  2YRA A;  1OK2 A;  4FXG G;  4YIZ A;  1QUB A;  1OJW A;  2Y8S A;  3NJA A;  3SW0 X;  3GXE A;  4BWC A;  4F4O C;  1UOT P;  2RLQ A;  3KZJ A;  1TPG A;  2X2Z A;  1TPN A;  2JGX A;  1TPM A;  4AYE A;  1H2Q P;  1OK3 A;  1MD7 A;  4ZH1 D;  1GPZ A;  3KXV A;  4MUC A;  4N7E A;  5I0Q B;  3ZLE A;  5FO8 C;  3WSX A;  1G4G A;  1HCC A;  3MQL A;  2B5I D;  2W81 A;  1ELV A;  1SS2 A;  1Q3X A;  3IX0 A;  3OXU D;  5HYT B;  4CSY A;  2CG7 A;  5JPM G;  1H04 P;  1OK1 A;  2EHF A;  1O9A A;  2QY0 A;  3WSY A;  2V8E A;  4ONT D;  3GOV A;  3L89 M;  5DN4 A;  2O39 C;  2ERJ A;  2RKZ A;  2Y8R A;  3FGR A;  3NFP I;  4IGD A; 
#chains in the Genus database with same CATH homology
 1FBR A;  4LOT A;  1C1Z A;  2XWB F;  3M7P A;  2RKY A;  4K12 A;  2KMS A;  2XRB A;  3ZD2 A;  4JHS A;  3R62 A;  4C16 A;  2XQW C;  1VVC A;  5HYU B;  4J38 B;  4YNX A;  4A5W B;  1SRZ A;  1E8B A;  1CKL A;  2WII C;  3OED C;  3O8E B;  2EC3 A;  2IZ3 A;  3T5O A;  4KKD A;  1GHQ B;  4LOS A;  4PZ5 A;  1Z92 B;  2CKU A;  4B2S A;  3ERB A;  1QO6 A;  4B2R A;  2XRD A;  1ZJK A;  3EJH A;  1OJV A;  1HFH A;  2MCY A;  2UWN A;  2YBY A;  2G7I A;  1QGB A;  3OP8 A;  2RL0 A;  2W80 A;  3ZD1 A;  2CG6 A;  2RLP A;  1HFI A;  5HZP B;  2JGW A;  4AYD A;  2JRA A;  3IU3 I;  5HYP A;  3RJ3 D;  1PPQ A;  2IZ4 A;  2MCZ A;  1E88 A;  1GKG A;  3INB C;  1MD8 A;  3TVJ A;  4DJZ A;  4WJG 2;  1OK9 A;  1VVD A;  2A55 A;  3CAL A;  1E5G A;  1H2P P;  4AYI A;  1G4F A;  1U5M A;  1OJY A;  1NWV A;  4AYM A;  3ZRZ A;  2LOJ A;  1GKN A;  1LY2 A;  2KRI A;  1H03 P;  2XWJ I;  2BZM A;  2YRA A;  1OK2 A;  4FXG G;  1QUB A;  1OJW A;  3SW0 X;  3GXE A;  4F4O C;  1UOT P;  2RLQ A;  3KZJ A;  1TPG A;  1TPN A;  2JGX A;  1TPM A;  4AYE A;  1H2Q P;  1OK3 A;  1MD7 A;  4ZH1 D;  1GPZ A;  3KXV A;  4MUC A;  5I0Q B;  5FO8 C;  1G4G A;  1HCC A;  3MQL A;  2B5I D;  2W81 A;  1ELV A;  1SS2 A;  1Q3X A;  3IX0 A;  3OXU D;  5HYT B;  4CSY A;  2CG7 A;  5JPM G;  1H04 P;  1OK1 A;  2EHF A;  1O9A A;  2QY0 A;  2V8E A;  4ONT D;  3GOV A;  3L89 M;  2O39 C;  2ERJ A;  2RKZ A;  3NFP I;  4IGD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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