1OB8A

Holliday junction resolving enzyme
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
124
structure length
119
Chain Sequence
GKNAERELVSILRGEGFNAVRIPTNPLPDIFATKGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMKGVPLIAIKFKQVHEWRVLVPEKAEDIIVTIDNSIPIEDLFKILEKRIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HOLLIDAY-JUNCTION RESOLVASE
publication title Substrate Recognition and Catalysis by the Holliday Junction Resolving Enzyme Hje.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 39
structure length 119
sequence length 124
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2003-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 1ob8A00
2FCOA 2OKFA 1F1ZA 1RZNA 3FOVA 3IEYA 2ZYZA 2CV8A 1IPIA 3AJVA 2GW6A 1Y88A 5FDKA 3P1YA 2WIZA 3P1ZB 1HH1A 2WCWA 4QBNA 4TKKA 1RLVA 1R11A 2VLDA 2ZYZB 4TKDA 1R0VA 1T0FA 1GEFA 2INBA 3AJVB 1OB9A 2GJWA 2WCZA 1ZP7A 2WJ0A 2WIWA 3P1ZA 2OSTA 1Y1OA 4QBOA 4QBLA 1OB8A 3DNXA 1XMXA 2EO0A 1A79A
chains in the Genus database with same CATH superfamily
2FCOA 2OKFA 2OSTA 1F1ZA 1RZNA 2DBSA 3FOVA 2ZYZA 3IEYA 4ZQUA 2CZRA 4G6UA 2CV8A 1IPIA 3AJVA 2GW6A 2FKHB 2FKCA 1Y88A 5FDKA 3P1YA 4DAVA 2WIZA 3P1ZB 4DA2A 2Z0RA 4QBLA 1HH1A 2WCWA 4QBNA 4TKKA 3IF0X 1RLVA 2VS1A 3IEYB 1YNMA 2FLCA 1R11A 4E6ZA 2VLDA 2ZYZB 4TKDA 3BT7A 1R0VA 1T0FA 1GEFA 2IXSA 2INBA 3AJVB 1OB9A 2GJWA 4DAPA 2WCZA 1ZP7A 2WJ0A 2W8MA 2FL3A 4G6VA 4LQEA 2WIWA 3P1ZA 2BH2A 4EV1A 1Y1OA 1UWVA 4QBOA 1OB8A 3DNXA 1XMXA 2EO0A 1A79A 2JJQA
chains in the Genus database with same CATH topology
2FCOA 2OKFA 2OSTA 1F1ZA 1RZNA 2DBSA 3FOVA 2ZYZA 3IEYA 4ZQUA 2CZRA 4G6UA 2CV8A 1IPIA 3AJVA 2GW6A 2FKHB 2FKCA 1Y88A 5FDKA 3P1YA 4DAVA 2WIZA 3P1ZB 4DA2A 2Z0RA 4QBLA 1HH1A 2WCWA 4QBNA 4TKKA 3IF0X 1RLVA 2VS1A 3IEYB 1YNMA 2FLCA 1R11A 4E6ZA 2VLDA 2ZYZB 4TKDA 3BT7A 1R0VA 1T0FA 1GEFA 2IXSA 2INBA 3AJVB 1OB9A 2GJWA 4DAPA 2WCZA 1ZP7A 2WJ0A 2W8MA 2FL3A 4G6VA 4LQEA 2WIWA 3P1ZA 2BH2A 4EV1A 1Y1OA 1UWVA 4QBOA 1OB8A 3DNXA 1XMXA 2EO0A 1A79A 2JJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FCO A;  2OKF A;  1F1Z A;  1RZN A;  3FOV A;  3IEY A;  2ZYZ A;  2CV8 A;  1IPI A;  3AJV A;  2GW6 A;  1Y88 A;  5FDK A;  3P1Y A;  2WIZ A;  3P1Z B;  1HH1 A;  2WCW A;  4QBN A;  4TKK A;  1RLV A;  1R11 A;  2VLD A;  2ZYZ B;  4TKD A;  1R0V A;  1T0F A;  1GEF A;  2INB A;  3AJV B;  1OB9 A;  2GJW A;  2WCZ A;  1ZP7 A;  2WJ0 A;  2WIW A;  3P1Z A;  2OST A;  1Y1O A;  4QBO A;  4QBL A;  1OB8 A;  3DNX A;  1XMX A;  2EO0 A;  1A79 A; 
#chains in the Genus database with same CATH topology
 2FCO A;  2OKF A;  2OST A;  1F1Z A;  1RZN A;  2DBS A;  3FOV A;  2ZYZ A;  3IEY A;  4ZQU A;  2CZR A;  4G6U A;  2CV8 A;  1IPI A;  3AJV A;  2GW6 A;  2FKH B;  2FKC A;  1Y88 A;  5FDK A;  3P1Y A;  4DAV A;  2WIZ A;  3P1Z B;  4DA2 A;  2Z0R A;  4QBL A;  1HH1 A;  2WCW A;  4QBN A;  4TKK A;  3IF0 X;  1RLV A;  2VS1 A;  3IEY B;  1YNM A;  2FLC A;  1R11 A;  4E6Z A;  2VLD A;  2ZYZ B;  4TKD A;  3BT7 A;  1R0V A;  1T0F A;  1GEF A;  2IXS A;  2INB A;  3AJV B;  1OB9 A;  2GJW A;  4DAP A;  2WCZ A;  1ZP7 A;  2WJ0 A;  2W8M A;  2FL3 A;  4G6V A;  4LQE A;  2WIW A;  3P1Z A;  2BH2 A;  4EV1 A;  1Y1O A;  1UWV A;  4QBO A;  1OB8 A;  3DNX A;  1XMX A;  2EO0 A;  1A79 A;  2JJQ A; 
#chains in the Genus database with same CATH homology
 2FCO A;  2OKF A;  2OST A;  1F1Z A;  1RZN A;  2DBS A;  3FOV A;  2ZYZ A;  3IEY A;  4ZQU A;  2CZR A;  4G6U A;  2CV8 A;  1IPI A;  3AJV A;  2GW6 A;  2FKH B;  2FKC A;  1Y88 A;  5FDK A;  3P1Y A;  4DAV A;  2WIZ A;  3P1Z B;  4DA2 A;  2Z0R A;  4QBL A;  1HH1 A;  2WCW A;  4QBN A;  4TKK A;  3IF0 X;  1RLV A;  2VS1 A;  3IEY B;  1YNM A;  2FLC A;  1R11 A;  4E6Z A;  2VLD A;  2ZYZ B;  4TKD A;  3BT7 A;  1R0V A;  1T0F A;  1GEF A;  2IXS A;  2INB A;  3AJV B;  1OB9 A;  2GJW A;  4DAP A;  2WCZ A;  1ZP7 A;  2WJ0 A;  2W8M A;  2FL3 A;  4G6V A;  4LQE A;  2WIW A;  3P1Z A;  2BH2 A;  4EV1 A;  1Y1O A;  1UWV A;  4QBO A;  1OB8 A;  3DNX A;  1XMX A;  2EO0 A;  1A79 A;  2JJQ A; 
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