1OB9A

Holliday junction resolving enzyme
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
124
structure length
124
Chain Sequence
GKNAERELVSILRGEGFNAVRIPTSNSSPNPLPDIFATKGNTLLSIECKSTWENKVKVKEHQVRKLLDFLSMFTMKGVPLIAIKFKQVHEWRVLVPEKAEDIIVTIDNSIPIEDLFKILEKRIE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords HOLLIDAY JUNCTION RESOLVASE
publication title Substrate Recognition and Catalysis by the Holliday Junction Resolving Enzyme Hje.
pubmed doi rcsb
source organism Sulfolobus solfataricus
total genus 37
structure length 124
sequence length 124
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2003-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 1ob9A00
2WJ0A 2GW6A 2OKFA 4QBNA 1ZP7A 2GJWA 2FCOA 4QBOA 2VLDA 1HH1A 1A79A 2INBA 3P1ZA 4TKDA 2ZYZA 1Y88A 3P1ZB 1F1ZA 2EO0A 2ZYZB 2WIWA 2OSTA 1RLVA 1RZNA 2WCZA 3FOVA 3AJVA 1T0FA 2CV8A 2WCWA 3IEYA 3AJVB 1Y1OA 1OB8A 1IPIA 3P1YA 1OB9A 4TKKA 1R11A 3DNXA 2WIZA 1XMXA 5FDKA 1R0VA 4QBLA 1GEFA
chains in the Genus database with same CATH superfamily
2WJ0A 2GW6A 2OKFA 4QBNA 1YNMA 1ZP7A 4E6ZA 2FL3A 2GJWA 2FCOA 4QBOA 2VLDA 2Z0RA 1HH1A 4LQEA 1A79A 2INBA 3P1ZA 4TKDA 2ZYZA 1Y88A 3P1ZB 1F1ZA 2EO0A 2ZYZB 2VS1A 2WIWA 1RLVA 2OSTA 1RZNA 2WCZA 2BH2A 3FOVA 2IXSA 3AJVA 4DA2A 1T0FA 4DAPA 2CV8A 2WCWA 3IEYA 3AJVB 1Y1OA 2JJQA 2W8MA 1OB8A 3IF0X 1IPIA 3P1YA 4EV1A 1OB9A 3IEYB 4TKKA 2CZRA 2DBSA 1R11A 3DNXA 2WIZA 1XMXA 4ZQUA 5FDKA 4G6UA 2FKHB 4DAVA 2FKCA 1R0VA 4QBLA 1UWVA 1GEFA 2FLCA 3BT7A 4G6VA
chains in the Genus database with same CATH topology
2WJ0A 2GW6A 2OKFA 4QBNA 1YNMA 1ZP7A 4E6ZA 2FL3A 2GJWA 2FCOA 4QBOA 2VLDA 2Z0RA 1HH1A 4LQEA 1A79A 2INBA 3P1ZA 4TKDA 2ZYZA 1Y88A 3P1ZB 1F1ZA 2EO0A 2ZYZB 2VS1A 2WIWA 1RLVA 2OSTA 1RZNA 2WCZA 2BH2A 3FOVA 2IXSA 3AJVA 4DA2A 1T0FA 4DAPA 2CV8A 2WCWA 3IEYA 3AJVB 1Y1OA 2JJQA 2W8MA 1OB8A 3IF0X 1IPIA 3P1YA 4EV1A 1OB9A 3IEYB 4TKKA 2CZRA 2DBSA 1R11A 3DNXA 2WIZA 1XMXA 4ZQUA 5FDKA 4G6UA 2FKHB 4DAVA 2FKCA 1R0VA 4QBLA 1UWVA 1GEFA 2FLCA 3BT7A 4G6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WJ0 A;  2GW6 A;  2OKF A;  4QBN A;  1ZP7 A;  2GJW A;  2FCO A;  4QBO A;  2VLD A;  1HH1 A;  1A79 A;  2INB A;  3P1Z A;  4TKD A;  2ZYZ A;  1Y88 A;  3P1Z B;  1F1Z A;  2EO0 A;  2ZYZ B;  2WIW A;  2OST A;  1RLV A;  1RZN A;  2WCZ A;  3FOV A;  3AJV A;  1T0F A;  2CV8 A;  2WCW A;  3IEY A;  3AJV B;  1Y1O A;  1OB8 A;  1IPI A;  3P1Y A;  1OB9 A;  4TKK A;  1R11 A;  3DNX A;  2WIZ A;  1XMX A;  5FDK A;  1R0V A;  4QBL A;  1GEF A; 
#chains in the Genus database with same CATH topology
 2WJ0 A;  2GW6 A;  2OKF A;  4QBN A;  1YNM A;  1ZP7 A;  4E6Z A;  2FL3 A;  2GJW A;  2FCO A;  4QBO A;  2VLD A;  2Z0R A;  1HH1 A;  4LQE A;  1A79 A;  2INB A;  3P1Z A;  4TKD A;  2ZYZ A;  1Y88 A;  3P1Z B;  1F1Z A;  2EO0 A;  2ZYZ B;  2VS1 A;  2WIW A;  1RLV A;  2OST A;  1RZN A;  2WCZ A;  2BH2 A;  3FOV A;  2IXS A;  3AJV A;  4DA2 A;  1T0F A;  4DAP A;  2CV8 A;  2WCW A;  3IEY A;  3AJV B;  1Y1O A;  2JJQ A;  2W8M A;  1OB8 A;  3IF0 X;  1IPI A;  3P1Y A;  4EV1 A;  1OB9 A;  3IEY B;  4TKK A;  2CZR A;  2DBS A;  1R11 A;  3DNX A;  2WIZ A;  1XMX A;  4ZQU A;  5FDK A;  4G6U A;  2FKH B;  4DAV A;  2FKC A;  1R0V A;  4QBL A;  1UWV A;  1GEF A;  2FLC A;  3BT7 A;  4G6V A; 
#chains in the Genus database with same CATH homology
 2WJ0 A;  2GW6 A;  2OKF A;  4QBN A;  1YNM A;  1ZP7 A;  4E6Z A;  2FL3 A;  2GJW A;  2FCO A;  4QBO A;  2VLD A;  2Z0R A;  1HH1 A;  4LQE A;  1A79 A;  2INB A;  3P1Z A;  4TKD A;  2ZYZ A;  1Y88 A;  3P1Z B;  1F1Z A;  2EO0 A;  2ZYZ B;  2VS1 A;  2WIW A;  1RLV A;  2OST A;  1RZN A;  2WCZ A;  2BH2 A;  3FOV A;  2IXS A;  3AJV A;  4DA2 A;  1T0F A;  4DAP A;  2CV8 A;  2WCW A;  3IEY A;  3AJV B;  1Y1O A;  2JJQ A;  2W8M A;  1OB8 A;  3IF0 X;  1IPI A;  3P1Y A;  4EV1 A;  1OB9 A;  3IEY B;  4TKK A;  2CZR A;  2DBS A;  1R11 A;  3DNX A;  2WIZ A;  1XMX A;  4ZQU A;  5FDK A;  4G6U A;  2FKH B;  4DAV A;  2FKC A;  1R0V A;  4QBL A;  1UWV A;  1GEF A;  2FLC A;  3BT7 A;  4G6V A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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