1OBIA

Crystal structure of the g130a mutant of malonamidase e2 from bradyrhizobium japonicum
Total Genus 152
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
152
sequence length
412
structure length
412
Chain Sequence
MISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSARAQASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFASRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVHEAWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Amidase
molecule keywords MALONAMIDASE E2
publication title Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad
pubmed doi rcsb
source organism Bradyrhizobium japonicum
total genus 152
structure length 412
sequence length 412
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-01-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01425 Amidase Amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1300.10 Alpha Beta Alpha-Beta Complex Amidase signature (AS) enzymes Amidase signature (AS) domain 1obiA00
3K84A 4YJIA 4N0HA 1OCLA 1OCMA 1O9PA 2WJ1A 3A1KA 2DQNA 3A2QA 4DO3A 2GI3A 1O9OA 3H0MA 3A1IA 1OCHA 3AL0A 4ISSA 4GYSA 3IP4A 3K83A 4GYRA 1OCKA 4HBPA 1MT5A 2WAPA 5EWQA 1O9NA 1O9QA 3PR0A 2WJ2A 3KFUE 4J5PA 3QKVA 1OBIA 2VYAA 2G5HA 2G5IA 3LJ6A 1OBJA 1OBKA 3K7FA 3H0RA 4YJ6A 3QK5A 3A2PA 3PPMA 3OJ8A 4WJ3A 2F2AA 1M22A 1OBLA 3QJ9A 2DC0A 4ISTA 5AC3A 1M21A 4N0IA 2DF4A 3H0LA 3QJ8A 3LJ7A 4CP8A
chains in the Genus database with same CATH superfamily
3K84A 4YJIA 4N0HA 1OCLA 1OCMA 1O9PA 2WJ1A 3A1KA 2DQNA 3A2QA 4DO3A 2GI3A 1O9OA 3H0MA 3A1IA 1OCHA 3AL0A 4ISSA 4GYSA 3IP4A 3K83A 4GYRA 1OCKA 4HBPA 1MT5A 2WAPA 5EWQA 1O9NA 1O9QA 3PR0A 2WJ2A 3KFUE 4J5PA 3QKVA 1OBIA 2VYAA 2G5HA 2G5IA 3LJ6A 1OBJA 1OBKA 3K7FA 3H0RA 4YJ6A 3QK5A 3A2PA 3PPMA 3OJ8A 4WJ3A 2F2AA 1M22A 1OBLA 3QJ9A 2DC0A 4ISTA 5AC3A 1M21A 4N0IA 2DF4A 3H0LA 3QJ8A 3LJ7A 4CP8A
chains in the Genus database with same CATH topology
3K84A 4YJIA 4N0HA 1OCLA 1OCMA 1O9PA 2WJ1A 3A1KA 2DQNA 3A2QA 4DO3A 2GI3A 1O9OA 3H0MA 3A1IA 1OCHA 3AL0A 4ISSA 4GYSA 3IP4A 3K83A 4GYRA 1OCKA 4HBPA 1MT5A 2WAPA 5EWQA 1O9NA 1O9QA 3PR0A 2WJ2A 3KFUE 4J5PA 3QKVA 1OBIA 2VYAA 2G5HA 2G5IA 3LJ6A 1OBJA 1OBKA 3K7FA 3H0RA 4YJ6A 3QK5A 3A2PA 3PPMA 3OJ8A 4WJ3A 2F2AA 1M22A 1OBLA 3QJ9A 2DC0A 4ISTA 5AC3A 1M21A 4N0IA 2DF4A 3H0LA 3QJ8A 3LJ7A 4CP8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3K84 A;  4YJI A;  4N0H A;  1OCL A;  1OCM A;  1O9P A;  2WJ1 A;  3A1K A;  2DQN A;  3A2Q A;  4DO3 A;  2GI3 A;  1O9O A;  3H0M A;  3A1I A;  1OCH A;  3AL0 A;  4ISS A;  4GYS A;  3IP4 A;  3K83 A;  4GYR A;  1OCK A;  4HBP A;  1MT5 A;  2WAP A;  5EWQ A;  1O9N A;  1O9Q A;  3PR0 A;  2WJ2 A;  3KFU E;  4J5P A;  3QKV A;  1OBI A;  2VYA A;  2G5H A;  2G5I A;  3LJ6 A;  1OBJ A;  1OBK A;  3K7F A;  3H0R A;  4YJ6 A;  3QK5 A;  3A2P A;  3PPM A;  3OJ8 A;  4WJ3 A;  2F2A A;  1M22 A;  1OBL A;  3QJ9 A;  2DC0 A;  4IST A;  5AC3 A;  1M21 A;  4N0I A;  2DF4 A;  3H0L A;  3QJ8 A;  3LJ7 A;  4CP8 A; 
#chains in the Genus database with same CATH topology
 3K84 A;  4YJI A;  4N0H A;  1OCL A;  1OCM A;  1O9P A;  2WJ1 A;  3A1K A;  2DQN A;  3A2Q A;  4DO3 A;  2GI3 A;  1O9O A;  3H0M A;  3A1I A;  1OCH A;  3AL0 A;  4ISS A;  4GYS A;  3IP4 A;  3K83 A;  4GYR A;  1OCK A;  4HBP A;  1MT5 A;  2WAP A;  5EWQ A;  1O9N A;  1O9Q A;  3PR0 A;  2WJ2 A;  3KFU E;  4J5P A;  3QKV A;  1OBI A;  2VYA A;  2G5H A;  2G5I A;  3LJ6 A;  1OBJ A;  1OBK A;  3K7F A;  3H0R A;  4YJ6 A;  3QK5 A;  3A2P A;  3PPM A;  3OJ8 A;  4WJ3 A;  2F2A A;  1M22 A;  1OBL A;  3QJ9 A;  2DC0 A;  4IST A;  5AC3 A;  1M21 A;  4N0I A;  2DF4 A;  3H0L A;  3QJ8 A;  3LJ7 A;  4CP8 A; 
#chains in the Genus database with same CATH homology
 3K84 A;  4YJI A;  4N0H A;  1OCL A;  1OCM A;  1O9P A;  2WJ1 A;  3A1K A;  2DQN A;  3A2Q A;  4DO3 A;  2GI3 A;  1O9O A;  3H0M A;  3A1I A;  1OCH A;  3AL0 A;  4ISS A;  4GYS A;  3IP4 A;  3K83 A;  4GYR A;  1OCK A;  4HBP A;  1MT5 A;  2WAP A;  5EWQ A;  1O9N A;  1O9Q A;  3PR0 A;  2WJ2 A;  3KFU E;  4J5P A;  3QKV A;  1OBI A;  2VYA A;  2G5H A;  2G5I A;  3LJ6 A;  1OBJ A;  1OBK A;  3K7F A;  3H0R A;  4YJ6 A;  3QK5 A;  3A2P A;  3PPM A;  3OJ8 A;  4WJ3 A;  2F2A A;  1M22 A;  1OBL A;  3QJ9 A;  2DC0 A;  4IST A;  5AC3 A;  1M21 A;  4N0I A;  2DF4 A;  3H0L A;  3QJ8 A;  3LJ7 A;  4CP8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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