1OCCL

Structure of bovine heart cytochrome c oxidase at the fully oxidized state
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
47
structure length
47
Chain Sequence
SHYEEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFFIVRHQLLKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A.
pubmed rcsb
molecule tags Oxidoreductase (cytochrome(c)-oxygen)
molecule keywords CYTOCHROME C OXIDASE
total genus 13
structure length 47
sequence length 47
chains with identical sequence Y
ec nomenclature
pdb deposition date 1996-04-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.49.10 Few Secondary Structures Irregular Cytochrome C Oxidase; Chain L Cytochrome c oxidase subunit VIIc 1occL00
2Y69L 1OCOL 3ASNL 5B1AL 2OCCL 3ABML 1OCZL 2EINL 3AG1L 5B1BL 3WG7L 2EILL 2ZXWL 3X2QL 1V54L 3AG4L 2EIKL 2DYRL 2EIML 2DYSL 1OCRL 5IY5L 3AG2L 3ASOL 1V55L 3AG3L 5B3SL 3ABKL 2EIJL 1OCCL 3ABLL
chains in the Genus database with same CATH superfamily
2Y69L 1OCOL 3ASNL 5B1AL 2OCCL 3ABML 1OCZL 2EINL 3AG1L 5B1BL 3WG7L 2EILL 2ZXWL 3X2QL 1V54L 3AG4L 2EIKL 2DYRL 2EIML 2DYSL 1OCRL 5IY5L 3AG2L 3ASOL 1V55L 3AG3L 5B3SL 3ABKL 2EIJL 1OCCL 3ABLL
chains in the Genus database with same CATH topology
2Y69L 1OCOL 3ASNL 5B1AL 2OCCL 3ABML 1OCZL 2EINL 3AG1L 5B1BL 3WG7L 2EILL 2ZXWL 3X2QL 1V54L 3AG4L 2EIKL 2DYRL 2EIML 2DYSL 1OCRL 5IY5L 3AG2L 3ASOL 1V55L 3AG3L 5B3SL 3ABKL 2EIJL 1OCCL 3ABLL
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2Y69 L;  1OCO L;  3ASN L;  5B1A L;  2OCC L;  3ABM L;  1OCZ L;  2EIN L;  3AG1 L;  5B1B L;  3WG7 L;  2EIL L;  2ZXW L;  3X2Q L;  1V54 L;  3AG4 L;  2EIK L;  2DYR L;  2EIM L;  2DYS L;  1OCR L;  5IY5 L;  3AG2 L;  3ASO L;  1V55 L;  3AG3 L;  5B3S L;  3ABK L;  2EIJ L;  1OCC L;  3ABL L; 
#chains in the Genus database with same CATH topology
 2Y69 L;  1OCO L;  3ASN L;  5B1A L;  2OCC L;  3ABM L;  1OCZ L;  2EIN L;  3AG1 L;  5B1B L;  3WG7 L;  2EIL L;  2ZXW L;  3X2Q L;  1V54 L;  3AG4 L;  2EIK L;  2DYR L;  2EIM L;  2DYS L;  1OCR L;  5IY5 L;  3AG2 L;  3ASO L;  1V55 L;  3AG3 L;  5B3S L;  3ABK L;  2EIJ L;  1OCC L;  3ABL L; 
#chains in the Genus database with same CATH homology
 2Y69 L;  1OCO L;  3ASN L;  5B1A L;  2OCC L;  3ABM L;  1OCZ L;  2EIN L;  3AG1 L;  5B1B L;  3WG7 L;  2EIL L;  2ZXW L;  3X2Q L;  1V54 L;  3AG4 L;  2EIK L;  2DYR L;  2EIM L;  2DYS L;  1OCR L;  5IY5 L;  3AG2 L;  3ASO L;  1V55 L;  3AG3 L;  5B3S L;  3ABK L;  2EIJ L;  1OCC L;  3ABL L;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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