1OH2P

Sucrose-specific porin, with bound sucrose molecules
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
413
structure length
413
Chain Sequence
SGFEFHGYARSGVIMNDSGASTKSGAYITPAGETGGAIGRLGNQADTYVEMNLEHKQTLDNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKWNDGLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFAGPLQMMVSGLRAKDNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRDGSSKTALLYGHGLGAEVKGIGSDGALRPGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRYADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQAVNGSFYKLTFAPTFKVGSIGDFFSRPEIRFYTSWMDWSKKLNNYASDDALGSDGFNSGGEWSFGVQMETWF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Membrane protein
molecule keywords Sucrose porin
publication title Sucrose-Specific Porin, with Bound Sucrose Molecules
rcsb
source organism Salmonella typhimurium
total genus 105
structure length 413
sequence length 413
chains with identical sequence R
ec nomenclature
pdb deposition date 2003-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF02264 LamB LamB porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.10 Mainly Beta Beta Barrel Maltoporin; Chain A Porin, LamB type 1oh2P00
1MPRA 1OH2Q 1MPQA 1MALA 1MPMA 1MPOA 1OH2P 1A0SP 1AF6A 2MPRA 1A0TP 1MPNA
chains in the Genus database with same CATH superfamily
2GSKA 1MPRA 1QFFA 1NQGA 2GRXA 1MPQA 4B7OA 2W77A 1QKCA 1FI1A 1OH2P 3EFMA 2HDIA 1PNZA 2W6UA 1FEPA 2MPRA 3DDRA 4AIQA 2IAHA 3CSLA 1PO0A 1QJQA 2W78A 3QLBA 1MPMA 2GUFA 2YSUA 2W76A 1A0SP 1AF6A 5FOKA 1BY5A 1NQEA 3V8XA 4CU4A 1BY3A 1UJWA 1QFGA 4AIPA 2W75A 1KMPA 1MPNA 1FCPA 2W16A 1OH2Q 3RGNA 1MPOA 3M8DA 3FHHA 2W6TA 1NQHA 2FCPA 1NQFA 2O5PA 1MALA 4EPAA 3RGMA 1XKWA 1XKHA 1KMOA 2HDFA 3V89A 1A0TP 3CSNA 3M8BA 1PO3A
chains in the Genus database with same CATH topology
1MPRA 1OH2Q 1MPQA 1MALA 1MPMA 1MPOA 1OH2P 1A0SP 1AF6A 2MPRA 1A0TP 1MPNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MPR A;  1OH2 Q;  1MPQ A;  1MAL A;  1MPM A;  1MPO A;  1OH2 P;  1A0S P;  1AF6 A;  2MPR A;  1A0T P;  1MPN A; 
#chains in the Genus database with same CATH topology
 2GSK A;  1MPR A;  1QFF A;  1NQG A;  2GRX A;  1MPQ A;  4B7O A;  2W77 A;  1QKC A;  1FI1 A;  1OH2 P;  3EFM A;  2HDI A;  1PNZ A;  2W6U A;  1FEP A;  2MPR A;  3DDR A;  4AIQ A;  2IAH A;  3CSL A;  1PO0 A;  1QJQ A;  2W78 A;  3QLB A;  1MPM A;  2GUF A;  2YSU A;  2W76 A;  1A0S P;  1AF6 A;  5FOK A;  1BY5 A;  1NQE A;  3V8X A;  4CU4 A;  1BY3 A;  1UJW A;  1QFG A;  4AIP A;  2W75 A;  1KMP A;  1MPN A;  1FCP A;  2W16 A;  1OH2 Q;  3RGN A;  1MPO A;  3M8D A;  3FHH A;  2W6T A;  1NQH A;  2FCP A;  1NQF A;  2O5P A;  1MAL A;  4EPA A;  3RGM A;  1XKW A;  1XKH A;  1KMO A;  2HDF A;  3V89 A;  1A0T P;  3CSN A;  3M8B A;  1PO3 A; 
#chains in the Genus database with same CATH homology
 1MPR A;  1OH2 Q;  1MPQ A;  1MAL A;  1MPM A;  1MPO A;  1OH2 P;  1A0S P;  1AF6 A;  2MPR A;  1A0T P;  1MPN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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