1OHUA

Structure of caenorhabditis elegans ced-9
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
171
structure length
165
Chain Sequence
NDWEEPRLDIEGFVVDYFTHRIRQNGMEWFGAPGLPSGVQPEHEMMRVMGTIFEKKHAENFETFSEQLLAVPRISFSLYQDVVRTVGNPMSYGRLIGLISFGGFVAAKMMESVELQGQVRNLFVYTSLFIKTRIRNNWKEHNRSWDDFMTLGKQMKEDYERAEAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords APOPTOSIS REGULATOR CED-9
publication title Unique Structural Features of a Bcl-2 Family Protein Ced-9 and Biophysical Characterization of Ced-9/Egl-1 Interactions
pubmed doi rcsb
source organism Caenorhabditis elegans
total genus 49
structure length 165
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family
A PF02180 BH4 Bcl-2 homology region 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.437.10 Mainly Alpha Orthogonal Bundle Apoptosis Regulator Bcl-x Blc2-like 1ohuA00
2O2NA 4HW2A 4OYDA 4G35A 4HW4A 3CVAX 1WSXA 1YSWA 4K5BC 4HW3A 2VOIA 2IMSA 1O0LA 2VOGA 4B4SA 1R2GA 3IHCA 1LXLA 2MHSA 4ZBIA 3KZ0A 2O2MA 4BD7A 5IEZA 4YK9A 2BZWA 3ILCA 3IIHA 4ZIHA 4BD8A 1YSNA 5JSBA 1YSGA 4ZIEA 1GJHA 5C3FA 2XPXA 4U2VA 2ME8A 4ZBFA 2B48A 2XA0A 2VM6A 2YV6A 1F16A 2V6QA 2K7WA 3DVUA 3MQPA 3PK1A 1K3KA 5FC4A 3I1HA 4BD6A 1G5MA 1MAZA 2ABOA 3WIYA 2MEJA 4BD2A 3WIXA 1R2DA 4U2UA 3MK8A 2O21A 1R2HA 2O22A 2NLAA 2RODA 4BPIA 2M5BA 2IMTA 1R2EA 3IHEA 2W3LA 1AF3A 2JCNA 2KUAA 3IO9A 4YJ4A 2O2FA 3KJ0A 4ZEQA 3KJ1A 1BXLA 4S0PA 4OQ6A 1PQ0A 1MK3A 2ROCA 3BL2A 4BDUA 1Q59A 5IF4A 4BPJA 1OHUA 4QVXA 5KTGA 3IIGA 1G5JA 4S0OA 3KJ2A 5C6HA 1TY4A 2JM6B 1R2IA 3IHDA 2NL9A 4OQ5A 3D7VA 5FDOA 4ZIFA 5FDRA 4QNQA 5KU9A 1DDBA 3QBRA 2PQKA 2WH6A 1YSIA 5FMIA 4ZIIA 4ZIGA 2A5YA 2BIDA 2KBWA 1ZY3A 4WMRA 2VOHA 2VOFA 2LR1A 4MI8A 1PQ1A
chains in the Genus database with same CATH superfamily
2O2NA 4HW2A 4OYDA 3JRVA 4G35A 4HW4A 3CVAX 4UF1A 1WSXA 1YSWA 4K5BC 4HW3A 2VOIA 2IMSA 1O0LA 2O42A 2VOGA 4B4SA 1R2GA 3IHCA 1LXLA 2MHSA 4ZBIA 3KZ0A 2O2MA 4BD7A 5IEZA 4YK9A 2BZWA 3ILCA 3IIHA 4ZIHA 4D2LA 4BD8A 4M0SA 1YSNA 5JSBA 1YSGA 4ZIEA 1GJHA 5C3FA 2XPXA 4U2VA 2ME8A 2K36A 4ZBFA 4BBDA 2B48A 2XA0A 2VM6A 2YV6A 4BBCA 1F16A 2JBXA 2V6QA 2K7WA 3DVUA 3MQPA 3PK1A 2VTYA 1K3KA 5FC4A 3I1HA 4BD6A 1G5MA 1MAZA 2ABOA 3WIYA 2MEJA 4BD2A 3WIXA 1R2DA 4U2UA 3MK8A 2O21A 1R2HA 2O22A 2NLAA 2RODA 2VVWA 4LQKA 4BPIA 2M5BA 2IMTA 2VVXA 1R2EA 3IHEA 2W3LA 1AF3A 2JCNA 2KUAA 3IO9A 4YJ4A 4UF2A 2O2FA 3KJ0A 4ZEQA 3KJ1A 1BXLA 4S0PA 4OQ6A 1PQ0A 2I39A 1MK3A 2ROCA 3BL2A 4BDUA 1Q59A 5IF4A 4BPJA 4UF3A 1OHUA 4QVXA 5KTGA 3IIGA 1G5JA 4S0OA 3KJ2A 5C6HA 1TY4A 2JM6B 1R2IA 3IHDA 2NL9A 4OQ5A 4BBBA 3D7VA 5FDOA 4ZIFA 5FDRA 2JBYA 4QNQA 2VVYA 5KU9A 1DDBA 3QBRA 2PQKA 2WH6A 4D2MA 1YSIA 5FMIA 2UXEA 4ZIIA 4ZIGA 2A5YA 2BIDA 2KBWA 1ZY3A 4WMRA 2VOHA 2VOFA 2LR1A 4MI8A 1PQ1A
chains in the Genus database with same CATH topology
2O2NA 4HW2A 4OYDA 4G35A 4HW4A 3CVAX 1WSXA 1YSWA 4K5BC 4HW3A 2VOIA 2IMSA 1O0LA 2VOGA 4B4SA 1R2GA 3IHCA 1LXLA 2MHSA 4ZBIA 3KZ0A 2O2MA 4BD7A 5IEZA 4YK9A 2BZWA 3ILCA 3IIHA 4ZIHA 4BD8A 1YSNA 5JSBA 1YSGA 4ZIEA 1GJHA 5C3FA 2XPXA 4U2VA 2ME8A 4ZBFA 2B48A 2XA0A 2VM6A 2YV6A 1F16A 2V6QA 2K7WA 3DVUA 3MQPA 3PK1A 1K3KA 5FC4A 3I1HA 4BD6A 1G5MA 1MAZA 2ABOA 3WIYA 2MEJA 4BD2A 3WIXA 1R2DA 4U2UA 3MK8A 2O21A 1R2HA 2O22A 2NLAA 2RODA 4BPIA 2M5BA 2IMTA 1R2EA 3IHEA 2W3LA 1AF3A 2JCNA 2KUAA 3IO9A 4YJ4A 2O2FA 3KJ0A 4ZEQA 3KJ1A 1BXLA 4S0PA 4OQ6A 1PQ0A 1MK3A 2ROCA 3BL2A 4BDUA 1Q59A 5IF4A 4BPJA 1OHUA 4QVXA 5KTGA 3IIGA 1G5JA 4S0OA 3KJ2A 5C6HA 1TY4A 2JM6B 1R2IA 3IHDA 2NL9A 4OQ5A 3D7VA 5FDOA 4ZIFA 5FDRA 4QNQA 5KU9A 1DDBA 3QBRA 2PQKA 2WH6A 1YSIA 5FMIA 4ZIIA 4ZIGA 2A5YA 2BIDA 2KBWA 1ZY3A 4WMRA 2VOHA 2VOFA 2LR1A 4MI8A 1PQ1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O2N A;  4HW2 A;  4OYD A;  4G35 A;  4HW4 A;  3CVA X;  1WSX A;  1YSW A;  4K5B C;  4HW3 A;  2VOI A;  2IMS A;  1O0L A;  2VOG A;  4B4S A;  1R2G A;  3IHC A;  1LXL A;  2MHS A;  4ZBI A;  3KZ0 A;  2O2M A;  4BD7 A;  5IEZ A;  4YK9 A;  2BZW A;  3ILC A;  3IIH A;  4ZIH A;  4BD8 A;  1YSN A;  5JSB A;  1YSG A;  4ZIE A;  1GJH A;  5C3F A;  2XPX A;  4U2V A;  2ME8 A;  4ZBF A;  2B48 A;  2XA0 A;  2VM6 A;  2YV6 A;  1F16 A;  2V6Q A;  2K7W A;  3DVU A;  3MQP A;  3PK1 A;  1K3K A;  5FC4 A;  3I1H A;  4BD6 A;  1G5M A;  1MAZ A;  2ABO A;  3WIY A;  2MEJ A;  4BD2 A;  3WIX A;  1R2D A;  4U2U A;  3MK8 A;  2O21 A;  1R2H A;  2O22 A;  2NLA A;  2ROD A;  4BPI A;  2M5B A;  2IMT A;  1R2E A;  3IHE A;  2W3L A;  1AF3 A;  2JCN A;  2KUA A;  3IO9 A;  4YJ4 A;  2O2F A;  3KJ0 A;  4ZEQ A;  3KJ1 A;  1BXL A;  4S0P A;  4OQ6 A;  1PQ0 A;  1MK3 A;  2ROC A;  3BL2 A;  4BDU A;  1Q59 A;  5IF4 A;  4BPJ A;  1OHU A;  4QVX A;  5KTG A;  3IIG A;  1G5J A;  4S0O A;  3KJ2 A;  5C6H A;  1TY4 A;  2JM6 B;  1R2I A;  3IHD A;  2NL9 A;  4OQ5 A;  3D7V A;  5FDO A;  4ZIF A;  5FDR A;  4QNQ A;  5KU9 A;  1DDB A;  3QBR A;  2PQK A;  2WH6 A;  1YSI A;  5FMI A;  4ZII A;  4ZIG A;  2A5Y A;  2BID A;  2KBW A;  1ZY3 A;  4WMR A;  2VOH A;  2VOF A;  2LR1 A;  4MI8 A;  1PQ1 A; 
#chains in the Genus database with same CATH topology
 2O2N A;  4HW2 A;  4OYD A;  3JRV A;  4G35 A;  4HW4 A;  3CVA X;  4UF1 A;  1WSX A;  1YSW A;  4K5B C;  4HW3 A;  2VOI A;  2IMS A;  1O0L A;  2O42 A;  2VOG A;  4B4S A;  1R2G A;  3IHC A;  1LXL A;  2MHS A;  4ZBI A;  3KZ0 A;  2O2M A;  4BD7 A;  5IEZ A;  4YK9 A;  2BZW A;  3ILC A;  3IIH A;  4ZIH A;  4D2L A;  4BD8 A;  4M0S A;  1YSN A;  5JSB A;  1YSG A;  4ZIE A;  1GJH A;  5C3F A;  2XPX A;  4U2V A;  2ME8 A;  2K36 A;  4ZBF A;  4BBD A;  2B48 A;  2XA0 A;  2VM6 A;  2YV6 A;  4BBC A;  1F16 A;  2JBX A;  2V6Q A;  2K7W A;  3DVU A;  3MQP A;  3PK1 A;  2VTY A;  1K3K A;  5FC4 A;  3I1H A;  4BD6 A;  1G5M A;  1MAZ A;  2ABO A;  3WIY A;  2MEJ A;  4BD2 A;  3WIX A;  1R2D A;  4U2U A;  3MK8 A;  2O21 A;  1R2H A;  2O22 A;  2NLA A;  2ROD A;  2VVW A;  4LQK A;  4BPI A;  2M5B A;  2IMT A;  2VVX A;  1R2E A;  3IHE A;  2W3L A;  1AF3 A;  2JCN A;  2KUA A;  3IO9 A;  4YJ4 A;  4UF2 A;  2O2F A;  3KJ0 A;  4ZEQ A;  3KJ1 A;  1BXL A;  4S0P A;  4OQ6 A;  1PQ0 A;  2I39 A;  1MK3 A;  2ROC A;  3BL2 A;  4BDU A;  1Q59 A;  5IF4 A;  4BPJ A;  4UF3 A;  1OHU A;  4QVX A;  5KTG A;  3IIG A;  1G5J A;  4S0O A;  3KJ2 A;  5C6H A;  1TY4 A;  2JM6 B;  1R2I A;  3IHD A;  2NL9 A;  4OQ5 A;  4BBB A;  3D7V A;  5FDO A;  4ZIF A;  5FDR A;  2JBY A;  4QNQ A;  2VVY A;  5KU9 A;  1DDB A;  3QBR A;  2PQK A;  2WH6 A;  4D2M A;  1YSI A;  5FMI A;  2UXE A;  4ZII A;  4ZIG A;  2A5Y A;  2BID A;  2KBW A;  1ZY3 A;  4WMR A;  2VOH A;  2VOF A;  2LR1 A;  4MI8 A;  1PQ1 A; 
#chains in the Genus database with same CATH homology
 2O2N A;  4HW2 A;  4OYD A;  4G35 A;  4HW4 A;  3CVA X;  1WSX A;  1YSW A;  4K5B C;  4HW3 A;  2VOI A;  2IMS A;  1O0L A;  2VOG A;  4B4S A;  1R2G A;  3IHC A;  1LXL A;  2MHS A;  4ZBI A;  3KZ0 A;  2O2M A;  4BD7 A;  5IEZ A;  4YK9 A;  2BZW A;  3ILC A;  3IIH A;  4ZIH A;  4BD8 A;  1YSN A;  5JSB A;  1YSG A;  4ZIE A;  1GJH A;  5C3F A;  2XPX A;  4U2V A;  2ME8 A;  4ZBF A;  2B48 A;  2XA0 A;  2VM6 A;  2YV6 A;  1F16 A;  2V6Q A;  2K7W A;  3DVU A;  3MQP A;  3PK1 A;  1K3K A;  5FC4 A;  3I1H A;  4BD6 A;  1G5M A;  1MAZ A;  2ABO A;  3WIY A;  2MEJ A;  4BD2 A;  3WIX A;  1R2D A;  4U2U A;  3MK8 A;  2O21 A;  1R2H A;  2O22 A;  2NLA A;  2ROD A;  4BPI A;  2M5B A;  2IMT A;  1R2E A;  3IHE A;  2W3L A;  1AF3 A;  2JCN A;  2KUA A;  3IO9 A;  4YJ4 A;  2O2F A;  3KJ0 A;  4ZEQ A;  3KJ1 A;  1BXL A;  4S0P A;  4OQ6 A;  1PQ0 A;  1MK3 A;  2ROC A;  3BL2 A;  4BDU A;  1Q59 A;  5IF4 A;  4BPJ A;  1OHU A;  4QVX A;  5KTG A;  3IIG A;  1G5J A;  4S0O A;  3KJ2 A;  5C6H A;  1TY4 A;  2JM6 B;  1R2I A;  3IHD A;  2NL9 A;  4OQ5 A;  3D7V A;  5FDO A;  4ZIF A;  5FDR A;  4QNQ A;  5KU9 A;  1DDB A;  3QBR A;  2PQK A;  2WH6 A;  1YSI A;  5FMI A;  4ZII A;  4ZIG A;  2A5Y A;  2BID A;  2KBW A;  1ZY3 A;  4WMR A;  2VOH A;  2VOF A;  2LR1 A;  4MI8 A;  1PQ1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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