1OHZB

Cohesin-dockerin complex from the cellulosome of clostridium thermocellum
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
56
structure length
56
Chain Sequence
GDVNGDGTINSTDLTMLKRSVLRAITLTDDAKARADVDKNGSINSTDVLLLSRYLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords CELLULOSOMAL SCAFFOLDING PROTEIN A
publication title Cellulosome Assembly Revealed by the Crystal Structure of the Cohesin-Dockerin Complex
pubmed doi rcsb
source organism Clostridium thermocellum
total genus 18
structure length 56
sequence length 56
ec nomenclature ec 3.2.1.8: Endo-1,4-beta-xylanase.
pdb deposition date 2003-06-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00404 Dockerin_1 Dockerin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1330.10 Mainly Alpha Orthogonal Bundle Type 1 dockerin domain Dockerin domain 1ohzB00
2MTEA 5G5DB 4IU3B 2OZNB 5K39B 3KCPA 2CCLB 2VN6B 4WI0B 4DH2B 2B59B 2Y3NB 4UYPB 4FL4C 3UL4B 2JNKA 4FL4A 1DAQA 4IU2B 1DAVA 1OHZB 4U3SB 2VN5B 4WKZA 5LXVB 4UYQB
chains in the Genus database with same CATH superfamily
2MTEA 5G5DB 4IU3B 2OZNB 5K39B 3KCPA 2CCLB 2VN6B 4WI0B 4DH2B 2B59B 2Y3NB 4UYPB 4FL4C 3UL4B 2JNKA 4FL4A 1DAQA 4IU2B 1DAVA 1OHZB 4U3SB 2VN5B 4WKZA 5LXVB 4UYQB
chains in the Genus database with same CATH topology
2MTEA 5G5DB 4IU3B 2OZNB 5K39B 3KCPA 2CCLB 2VN6B 4WI0B 4DH2B 2B59B 2Y3NB 4UYPB 4FL4C 3UL4B 2JNKA 4FL4A 1DAQA 4IU2B 1DAVA 1OHZB 4U3SB 2VN5B 4WKZA 5LXVB 4UYQB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2MTE A;  5G5D B;  4IU3 B;  2OZN B;  5K39 B;  3KCP A;  2CCL B;  2VN6 B;  4WI0 B;  4DH2 B;  2B59 B;  2Y3N B;  4UYP B;  4FL4 C;  3UL4 B;  2JNK A;  4FL4 A;  1DAQ A;  4IU2 B;  1DAV A;  1OHZ B;  4U3S B;  2VN5 B;  4WKZ A;  5LXV B;  4UYQ B; 
#chains in the Genus database with same CATH topology
 2MTE A;  5G5D B;  4IU3 B;  2OZN B;  5K39 B;  3KCP A;  2CCL B;  2VN6 B;  4WI0 B;  4DH2 B;  2B59 B;  2Y3N B;  4UYP B;  4FL4 C;  3UL4 B;  2JNK A;  4FL4 A;  1DAQ A;  4IU2 B;  1DAV A;  1OHZ B;  4U3S B;  2VN5 B;  4WKZ A;  5LXV B;  4UYQ B; 
#chains in the Genus database with same CATH homology
 2MTE A;  5G5D B;  4IU3 B;  2OZN B;  5K39 B;  3KCP A;  2CCL B;  2VN6 B;  4WI0 B;  4DH2 B;  2B59 B;  2Y3N B;  4UYP B;  4FL4 C;  3UL4 B;  2JNK A;  4FL4 A;  1DAQ A;  4IU2 B;  1DAV A;  1OHZ B;  4U3S B;  2VN5 B;  4WKZ A;  5LXV B;  4UYQ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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