1OI8A

5'-nucleotidase (e. coli) with an engineered disulfide bridge (p90c, l424c)
Total Genus 177
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
177
sequence length
525
structure length
525
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVCESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVCKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Escherichia coli
publication title Trapping a 96 Degree Domain Rotation in Two Distinct Conformations by Engineered Disulfide Bridges
pubmed doi rcsb
molecule keywords PROTEIN USHA
total genus 177
structure length 525
sequence length 525
chains with identical sequence B
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2003-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1oi8A01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1oi8A02
3KBPA 2O8GA 4FBQA 4ORCA 3AUZA 3FGAC 3AV0A 3E7AA 3H69A 4UT3A 3IB7A 1S3LA 3TGHA 1S3MA 4H1YP 2A22A 1WAO1 5DNYA 4FBWA 4V0WA 1S95A 3EGGA 4FCXA 4I5NC 3P71C 3H64A 3RL5A 4DT2A 4V0XA 4MP0A 1IT6A 1OI8A 4M0VA 3QFKA 4H1SA 3ICFA 2NYMC 3JYFA 2NYLC 3RL3A 4UWQA 1W24A 2IE4C 5J28A 1XZWA 3PSOA 2P6BA 1UF3A 3H68A 3C5WC 5JPFA 1XM7A 3DSCA 4YKEA 5HPEA 4LACC 2Q8UA 3DSDA 4B2OA 4V0VA 1AUIA 1M63A 4J6OA 3H63A 1FJMA 3QFNA 3PSNA 3ZTVA 4H2IA 1V73A 1NNWA 2O8AA 2WDDA 3RL4A 1JK7A 5EQVA 5F3WA 4DHLA 1HP1A 2BCDA 3THNA 1QFCA 2Z72A 4O43A 4WWLA 3C9FA 4ZX2A 5IOHA 1S70A 3N5UA 4TUGA 4Q7FA 4H2BA 4XPNA 3E7BA 4O5GA 3HVQA 4LU9A 2IAEC 4I5LC 5GTUA 1MF8A 4LTYA 3K7VC 2NPPC 4DSYA 1TCOA 4HD0A 2HYPA 4MOYA 3H67A 1USHA 2WDCA 5C1VA 4TUIA 1QHWA 2DFJA 2CV9A 1HPUA 2HY1A 3IVEA 3IB8A 4JA9A 4UT3B 3T1IA 2AHDA 2XMOA 1HO5A 3K7WC 5INBA 4F0ZA 2GJUA 4G9JA 4IL1A 2USHA 1II7A 4IYPC 1OIEA 1S8EA 4KKZA 5JJTA 2QFPA 4NZVA 2KKNA 1OIDA 3DW8C 3CK2A 4H2FA 3QG5C 4OR9A 1S3NA 2BQ8X 3ZU0A 4KBPA 1Z2XA 3H60A 1Z2WA 3V4YA 3QFMA 1KBPA 3THOB 2Z1AA 3QFOA 3H61A 4MOVA 2QFRA 1UTEA 3H66A 4FBKA 4O4KA 1T71A 2YVTA 3H62B 2R17A 4JA7A 4ORAA 1WARA 2IE3C 2WDEA 1G5BA 4O24A 4ZVZA 4UT2A 5JPEA 4ORBA 3LL8A 2BDXA 2QJCA 1SU1A 2NXFA 3IVDA 2WDFA 3RQZA 3EGHA 2JOGA 2HYOA 2Z06A 4H2GA 5B8IA 2ZBMA 1U32A 3GVEA 1T70A
chains in the Genus database with same CATH superfamily
3KBPA 2O8GA 4FBQA 4ORCA 3AUZA 3FGAC 3AV0A 3E7AA 2ZOAA 3H69A 4UT3A 3IB7A 1S3LA 3TGHA 1S3MA 4H1YP 2YEQA 2A22A 1WAO1 3E0JA 5DNYA 4FBWA 4V0WA 1S95A 3EGGA 4FCXA 4I5NC 3P71C 3H64A 3RL5A 4DT2A 4V0XA 4MP0A 1IT6A 1OI8A 4M0VA 3QFKA 4H1SA 3ICFA 2NYMC 3JYFA 2NYLC 3RL3A 4UWQA 1W24A 2IE4C 5J28A 1XZWA 2DXLA 2P6BA 1UF3A 3H68A 3PSOA 3C5WC 3D03A 5JPFA 1XM7A 3DSCA 4YKEA 5HPEA 4LACC 2Q8UA 3DSDA 4B2OA 3FLOA 4V0VA 1AUIA 1M63A 4J6OA 2DXNA 3H63A 1FJMA 3QFNA 3PSNA 3ZTVA 4H2IA 1V73A 1NNWA 2O8AA 2WDDA 3RL4A 1JK7A 5EQVA 5F3WA 4DHLA 1HP1A 2BCDA 3THNA 1QFCA 2Z72A 4O43A 4WWLA 3C9FA 4ZX2A 5IOHA 1S70A 3N5UA 4TUGA 4Q7FA 4H2BA 4XPNA 3E7BA 4O5GA 3HVQA 4LU9A 2IAEC 4I5LC 5GTUA 1MF8A 4LTYA 3K7VC 2NPPC 4DSYA 2ZO9B 1TCOA 4HD0A 2HYPA 4MOYA 3H67A 1USHA 2WDCA 5C1VA 4TUIA 1QHWA 2DFJA 2CV9A 1HPUA 2HY1A 3IVEA 3IB8A 4JA9A 4UT3B 3T1IA 2AHDA 2XMOA 1HO5A 3K7WC 5INBA 4F0ZA 2GJUA 4G9JA 4IL1A 2USHA 1II7A 4IYPC 1OIEA 1S8EA 4KKZA 5JJTA 2QFPA 4NZVA 2KKNA 1OIDA 3DW8C 3CK2A 4H2FA 3QG5C 4OR9A 1S3NA 2BQ8X 3ZU0A 4KBPA 1Z2XA 3H60A 1Z2WA 3V4YA 3QFMA 1KBPA 3THOB 2Z1AA 3QFOA 3H61A 4MOVA 2QFRA 1UTEA 3H66A 4FBKA 4O4KA 1T71A 2YVTA 3H62B 2R17A 4JA7A 4ORAA 1WARA 2IE3C 2WDEA 1G5BA 4O24A 4ZVZA 4UT2A 5JPEA 4ORBA 3LL8A 2BDXA 2QJCA 1SU1A 2NXFA 3IVDA 2WDFA 3RQZA 3EGHA 2JOGA 2HYOA 2Z06A 4H2GA 5B8IA 2ZBMA 1U32A 3GVEA 1T70A
chains in the Genus database with same CATH topology
3KBPA 2O8GA 4FBQA 4ORCA 3AUZA 3FGAC 3AV0A 3E7AA 2ZOAA 3H69A 4UT3A 3IB7A 1S3LA 3TGHA 1S3MA 4H1YP 2YEQA 2A22A 1WAO1 3E0JA 5DNYA 4FBWA 4V0WA 1S95A 3EGGA 4FCXA 4I5NC 3P71C 3H64A 3RL5A 4DT2A 4V0XA 4MP0A 1IT6A 1OI8A 4M0VA 3QFKA 4H1SA 3ICFA 2NYMC 3JYFA 2NYLC 3RL3A 4UWQA 1W24A 2IE4C 5J28A 1XZWA 2DXLA 2P6BA 1UF3A 3H68A 3PSOA 3C5WC 3D03A 5JPFA 1XM7A 3DSCA 4YKEA 5HPEA 4LACC 2Q8UA 3DSDA 4B2OA 3FLOA 4V0VA 1AUIA 1M63A 4J6OA 2DXNA 3H63A 1FJMA 3QFNA 3PSNA 3ZTVA 4H2IA 1V73A 1NNWA 2O8AA 2WDDA 3RL4A 1JK7A 5EQVA 5F3WA 4DHLA 1HP1A 2BCDA 3THNA 1QFCA 2Z72A 4O43A 4WWLA 3C9FA 4ZX2A 5IOHA 1S70A 3N5UA 4TUGA 4Q7FA 4H2BA 4XPNA 3E7BA 4O5GA 3HVQA 4LU9A 2IAEC 4I5LC 5GTUA 1MF8A 4LTYA 3K7VC 2NPPC 4DSYA 2ZO9B 1TCOA 4HD0A 2HYPA 4MOYA 3H67A 1USHA 2WDCA 5C1VA 4TUIA 1QHWA 2DFJA 2CV9A 1HPUA 2HY1A 3IVEA 3IB8A 4JA9A 4UT3B 3T1IA 2AHDA 2XMOA 1HO5A 3K7WC 5INBA 4F0ZA 2GJUA 4G9JA 4IL1A 2USHA 1II7A 4IYPC 1OIEA 1S8EA 4KKZA 5JJTA 2QFPA 4NZVA 2KKNA 1OIDA 3DW8C 3CK2A 4H2FA 3QG5C 4OR9A 1S3NA 2BQ8X 3ZU0A 4KBPA 1Z2XA 3H60A 1Z2WA 3V4YA 3QFMA 1KBPA 3THOB 2Z1AA 3QFOA 3H61A 4MOVA 2QFRA 1UTEA 3H66A 4FBKA 4O4KA 1T71A 2YVTA 3H62B 2R17A 4JA7A 4ORAA 1WARA 2IE3C 2WDEA 1G5BA 4O24A 4ZVZA 4UT2A 5JPEA 4ORBA 3LL8A 2BDXA 2QJCA 1SU1A 2NXFA 3IVDA 2WDFA 3RQZA 3EGHA 2JOGA 2HYOA 2Z06A 4H2GA 5B8IA 2ZBMA 1U32A 3GVEA 1T70A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KBP A;  2O8G A;  4FBQ A;  4ORC A;  3AUZ A;  3FGA C;  3AV0 A;  3E7A A;  3H69 A;  4UT3 A;  3IB7 A;  1S3L A;  3TGH A;  1S3M A;  4H1Y P;  2A22 A;  1WAO 1;  5DNY A;  4FBW A;  4V0W A;  1S95 A;  3EGG A;  4FCX A;  4I5N C;  3P71 C;  3H64 A;  3RL5 A;  4DT2 A;  4V0X A;  4MP0 A;  1IT6 A;  1OI8 A;  4M0V A;  3QFK A;  4H1S A;  3ICF A;  2NYM C;  3JYF A;  2NYL C;  3RL3 A;  4UWQ A;  1W24 A;  2IE4 C;  5J28 A;  1XZW A;  3PSO A;  2P6B A;  1UF3 A;  3H68 A;  3C5W C;  5JPF A;  1XM7 A;  3DSC A;  4YKE A;  5HPE A;  4LAC C;  2Q8U A;  3DSD A;  4B2O A;  4V0V A;  1AUI A;  1M63 A;  4J6O A;  3H63 A;  1FJM A;  3QFN A;  3PSN A;  3ZTV A;  4H2I A;  1V73 A;  1NNW A;  2O8A A;  2WDD A;  3RL4 A;  1JK7 A;  5EQV A;  5F3W A;  4DHL A;  1HP1 A;  2BCD A;  3THN A;  1QFC A;  2Z72 A;  4O43 A;  4WWL A;  3C9F A;  4ZX2 A;  5IOH A;  1S70 A;  3N5U A;  4TUG A;  4Q7F A;  4H2B A;  4XPN A;  3E7B A;  4O5G A;  3HVQ A;  4LU9 A;  2IAE C;  4I5L C;  5GTU A;  1MF8 A;  4LTY A;  3K7V C;  2NPP C;  4DSY A;  1TCO A;  4HD0 A;  2HYP A;  4MOY A;  3H67 A;  1USH A;  2WDC A;  5C1V A;  4TUI A;  1QHW A;  2DFJ A;  2CV9 A;  1HPU A;  2HY1 A;  3IVE A;  3IB8 A;  4JA9 A;  4UT3 B;  3T1I A;  2AHD A;  2XMO A;  1HO5 A;  3K7W C;  5INB A;  4F0Z A;  2GJU A;  4G9J A;  4IL1 A;  2USH A;  1II7 A;  4IYP C;  1OIE A;  1S8E A;  4KKZ A;  5JJT A;  2QFP A;  4NZV A;  2KKN A;  1OID A;  3DW8 C;  3CK2 A;  4H2F A;  3QG5 C;  4OR9 A;  1S3N A;  2BQ8 X;  3ZU0 A;  4KBP A;  1Z2X A;  3H60 A;  1Z2W A;  3V4Y A;  3QFM A;  1KBP A;  3THO B;  2Z1A A;  3QFO A;  3H61 A;  4MOV A;  2QFR A;  1UTE A;  3H66 A;  4FBK A;  4O4K A;  1T71 A;  2YVT A;  3H62 B;  2R17 A;  4JA7 A;  4ORA A;  1WAR A;  2IE3 C;  2WDE A;  1G5B A;  4O24 A;  4ZVZ A;  4UT2 A;  5JPE A;  4ORB A;  3LL8 A;  2BDX A;  2QJC A;  1SU1 A;  2NXF A;  3IVD A;  2WDF A;  3RQZ A;  3EGH A;  2JOG A;  2HYO A;  2Z06 A;  4H2G A;  5B8I A;  2ZBM A;  1U32 A;  3GVE A;  1T70 A; 
#chains in the Genus database with same CATH topology
 3KBP A;  2O8G A;  4FBQ A;  4ORC A;  3AUZ A;  3FGA C;  3AV0 A;  3E7A A;  2ZOA A;  3H69 A;  4UT3 A;  3IB7 A;  1S3L A;  3TGH A;  1S3M A;  4H1Y P;  2YEQ A;  2A22 A;  1WAO 1;  3E0J A;  5DNY A;  4FBW A;  4V0W A;  1S95 A;  3EGG A;  4FCX A;  4I5N C;  3P71 C;  3H64 A;  3RL5 A;  4DT2 A;  4V0X A;  4MP0 A;  1IT6 A;  1OI8 A;  4M0V A;  3QFK A;  4H1S A;  3ICF A;  2NYM C;  3JYF A;  2NYL C;  3RL3 A;  4UWQ A;  1W24 A;  2IE4 C;  5J28 A;  1XZW A;  2DXL A;  2P6B A;  1UF3 A;  3H68 A;  3PSO A;  3C5W C;  3D03 A;  5JPF A;  1XM7 A;  3DSC A;  4YKE A;  5HPE A;  4LAC C;  2Q8U A;  3DSD A;  4B2O A;  3FLO A;  4V0V A;  1AUI A;  1M63 A;  4J6O A;  2DXN A;  3H63 A;  1FJM A;  3QFN A;  3PSN A;  3ZTV A;  4H2I A;  1V73 A;  1NNW A;  2O8A A;  2WDD A;  3RL4 A;  1JK7 A;  5EQV A;  5F3W A;  4DHL A;  1HP1 A;  2BCD A;  3THN A;  1QFC A;  2Z72 A;  4O43 A;  4WWL A;  3C9F A;  4ZX2 A;  5IOH A;  1S70 A;  3N5U A;  4TUG A;  4Q7F A;  4H2B A;  4XPN A;  3E7B A;  4O5G A;  3HVQ A;  4LU9 A;  2IAE C;  4I5L C;  5GTU A;  1MF8 A;  4LTY A;  3K7V C;  2NPP C;  4DSY A;  2ZO9 B;  1TCO A;  4HD0 A;  2HYP A;  4MOY A;  3H67 A;  1USH A;  2WDC A;  5C1V A;  4TUI A;  1QHW A;  2DFJ A;  2CV9 A;  1HPU A;  2HY1 A;  3IVE A;  3IB8 A;  4JA9 A;  4UT3 B;  3T1I A;  2AHD A;  2XMO A;  1HO5 A;  3K7W C;  5INB A;  4F0Z A;  2GJU A;  4G9J A;  4IL1 A;  2USH A;  1II7 A;  4IYP C;  1OIE A;  1S8E A;  4KKZ A;  5JJT A;  2QFP A;  4NZV A;  2KKN A;  1OID A;  3DW8 C;  3CK2 A;  4H2F A;  3QG5 C;  4OR9 A;  1S3N A;  2BQ8 X;  3ZU0 A;  4KBP A;  1Z2X A;  3H60 A;  1Z2W A;  3V4Y A;  3QFM A;  1KBP A;  3THO B;  2Z1A A;  3QFO A;  3H61 A;  4MOV A;  2QFR A;  1UTE A;  3H66 A;  4FBK A;  4O4K A;  1T71 A;  2YVT A;  3H62 B;  2R17 A;  4JA7 A;  4ORA A;  1WAR A;  2IE3 C;  2WDE A;  1G5B A;  4O24 A;  4ZVZ A;  4UT2 A;  5JPE A;  4ORB A;  3LL8 A;  2BDX A;  2QJC A;  1SU1 A;  2NXF A;  3IVD A;  2WDF A;  3RQZ A;  3EGH A;  2JOG A;  2HYO A;  2Z06 A;  4H2G A;  5B8I A;  2ZBM A;  1U32 A;  3GVE A;  1T70 A; 
#chains in the Genus database with same CATH homology
 3KBP A;  2O8G A;  4FBQ A;  4ORC A;  3AUZ A;  3FGA C;  3AV0 A;  3E7A A;  2ZOA A;  3H69 A;  4UT3 A;  3IB7 A;  1S3L A;  3TGH A;  1S3M A;  4H1Y P;  2YEQ A;  2A22 A;  1WAO 1;  3E0J A;  5DNY A;  4FBW A;  4V0W A;  1S95 A;  3EGG A;  4FCX A;  4I5N C;  3P71 C;  3H64 A;  3RL5 A;  4DT2 A;  4V0X A;  4MP0 A;  1IT6 A;  1OI8 A;  4M0V A;  3QFK A;  4H1S A;  3ICF A;  2NYM C;  3JYF A;  2NYL C;  3RL3 A;  4UWQ A;  1W24 A;  2IE4 C;  5J28 A;  1XZW A;  2DXL A;  2P6B A;  1UF3 A;  3H68 A;  3PSO A;  3C5W C;  3D03 A;  5JPF A;  1XM7 A;  3DSC A;  4YKE A;  5HPE A;  4LAC C;  2Q8U A;  3DSD A;  4B2O A;  3FLO A;  4V0V A;  1AUI A;  1M63 A;  4J6O A;  2DXN A;  3H63 A;  1FJM A;  3QFN A;  3PSN A;  3ZTV A;  4H2I A;  1V73 A;  1NNW A;  2O8A A;  2WDD A;  3RL4 A;  1JK7 A;  5EQV A;  5F3W A;  4DHL A;  1HP1 A;  2BCD A;  3THN A;  1QFC A;  2Z72 A;  4O43 A;  4WWL A;  3C9F A;  4ZX2 A;  5IOH A;  1S70 A;  3N5U A;  4TUG A;  4Q7F A;  4H2B A;  4XPN A;  3E7B A;  4O5G A;  3HVQ A;  4LU9 A;  2IAE C;  4I5L C;  5GTU A;  1MF8 A;  4LTY A;  3K7V C;  2NPP C;  4DSY A;  2ZO9 B;  1TCO A;  4HD0 A;  2HYP A;  4MOY A;  3H67 A;  1USH A;  2WDC A;  5C1V A;  4TUI A;  1QHW A;  2DFJ A;  2CV9 A;  1HPU A;  2HY1 A;  3IVE A;  3IB8 A;  4JA9 A;  4UT3 B;  3T1I A;  2AHD A;  2XMO A;  1HO5 A;  3K7W C;  5INB A;  4F0Z A;  2GJU A;  4G9J A;  4IL1 A;  2USH A;  1II7 A;  4IYP C;  1OIE A;  1S8E A;  4KKZ A;  5JJT A;  2QFP A;  4NZV A;  2KKN A;  1OID A;  3DW8 C;  3CK2 A;  4H2F A;  3QG5 C;  4OR9 A;  1S3N A;  2BQ8 X;  3ZU0 A;  4KBP A;  1Z2X A;  3H60 A;  1Z2W A;  3V4Y A;  3QFM A;  1KBP A;  3THO B;  2Z1A A;  3QFO A;  3H61 A;  4MOV A;  2QFR A;  1UTE A;  3H66 A;  4FBK A;  4O4K A;  1T71 A;  2YVT A;  3H62 B;  2R17 A;  4JA7 A;  4ORA A;  1WAR A;  2IE3 C;  2WDE A;  1G5B A;  4O24 A;  4ZVZ A;  4UT2 A;  5JPE A;  4ORB A;  3LL8 A;  2BDX A;  2QJC A;  1SU1 A;  2NXF A;  3IVD A;  2WDF A;  3RQZ A;  3EGH A;  2JOG A;  2HYO A;  2Z06 A;  4H2G A;  5B8I A;  2ZBM A;  1U32 A;  3GVE A;  1T70 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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