1OIEA

5'-nucleotidase (e. coli) with an engineered disulfide bridge (s228c, p513c)
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
525
structure length
519
Chain Sequence
YEQDKTYKITVLHTNDHHGHFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGCNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAVAQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKCGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords PROTEIN USHA
publication title Trapping a 96 Degree Domain Rotation in Two Distinct Conformations by Engineered Disulfide Bridges
pubmed doi rcsb
source organism Escherichia coli
total genus 171
structure length 519
sequence length 525
ec nomenclature ec 3.1.3.5: 5'-nucleotidase.
pdb deposition date 2003-06-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00149 Metallophos Calcineurin-like phosphoesterase
A PF02872 5_nucleotid_C 5'-nucleotidase, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.21.10 Alpha Beta 4-Layer Sandwich Purple Acid Phosphatase; chain A, domain 2 Purple Acid Phosphatase; chain A, domain 2 1oieA01
3.90.780.10 Alpha Beta Alpha-Beta Complex 5'-nucleotidase; domain 2 5'-Nucleotidase, C-terminal domain 1oieA02
4V0WA 3FGAC 2AHDA 2NYMC 3H64A 3ICFA 4KBPA 4TUGA 3PSOA 4H1YP 2BQ8X 2Q8UA 5EQVA 2QJCA 2QFPA 2Z1AA 5HPEA 3K7VC 3AV0A 2Z06A 5F3WA 4FBWA 2IE4C 4DT2A 3PSNA 3C5WC 4H1SA 5IOHA 4UT3A 5INBA 4DSYA 2YVTA 4YKEA 3RL5A 2P6BA 2GJUA 3EGGA 1S3LA 2O8GA 3H61A 3QFNA 5JJTA 1II7A 4F0ZA 2WDCA 1XZWA 2JOGA 2ZBMA 3RQZA 3DW8C 1AUIA 1UTEA 4ZX2A 4JA7A 1XM7A 3QG5C 4V0XA 2R17A 3QFKA 2O8AA 1WAO1 4H2BA 4ORBA 1USHA 1KBPA 4B2OA 3CK2A 2IAEC 1HP1A 3THOB 1OI8A 1SU1A 4NZVA 3V4YA 4O43A 2WDDA 4IYPC 3RL3A 3IVEA 1IT6A 3H62B 4OR9A 3IB8A 3H63A 4MOYA 1OIEA 3GVEA 4MP0A 2BDXA 3E7BA 3LL8A 4UT2A 1OIDA 4LU9A 3RL4A 4O24A 1S3MA 1S3NA 5JPEA 1T70A 3DSDA 3IB7A 1S8EA 4WWLA 1G5BA 1NNWA 1HO5A 4HD0A 4H2FA 4UWQA 3N5UA 5J28A 2KKNA 3H68A 3C9FA 3HVQA 3QFMA 1W24A 3KBPA 4XPNA 1Z2WA 2NYLC 5GTUA 4LACC 1FJMA 3H67A 3AUZA 4ORCA 4MOVA 1MF8A 4H2IA 3H60A 4KKZA 2USHA 3P71C 4V0VA 1T71A 2HY1A 4TUIA 2HYPA 4FBKA 5DNYA 4H2GA 2WDFA 2A22A 4I5NC 4I5LC 4O4KA 2NPPC 2QFRA 2NXFA 3TGHA 3ZU0A 5B8IA 3JYFA 5C1VA 2HYOA 1U32A 4IL1A 3H66A 4ORAA 4ZVZA 2IE3C 5JPFA 3DSCA 3IVDA 1UF3A 3EGHA 1S70A 4LTYA 1QFCA 2WDEA 3E7AA 1M63A 1S95A 4UT3B 1QHWA 3H69A 4FBQA 2XMOA 1V73A 3QFOA 4G9JA 4O5GA 4Q7FA 2Z72A 1WARA 3THNA 4M0VA 3T1IA 1TCOA 3ZTVA 4DHLA 3K7WC 4JA9A 2DFJA 1JK7A 4FCXA 2CV9A 1Z2XA 4J6OA 1HPUA 2BCDA
chains in the Genus database with same CATH superfamily
4V0WA 3FGAC 2AHDA 2NYMC 3H64A 3ICFA 4KBPA 4TUGA 3PSOA 4H1YP 3FLOA 2BQ8X 2Q8UA 5EQVA 2QJCA 2QFPA 2Z1AA 5HPEA 3K7VC 3AV0A 2Z06A 5F3WA 4FBWA 2IE4C 4DT2A 2ZO9B 3C5WC 3PSNA 4H1SA 5IOHA 4UT3A 5INBA 4DSYA 2YVTA 4YKEA 3RL5A 2P6BA 2GJUA 2ZOAA 3EGGA 1S3LA 2O8GA 3H61A 3QFNA 5JJTA 1II7A 4F0ZA 2WDCA 1XZWA 2JOGA 2ZBMA 3RQZA 2DXLA 2YEQA 3DW8C 1AUIA 1UTEA 4ZX2A 4JA7A 1XM7A 3QG5C 4V0XA 2R17A 3QFKA 2O8AA 1WAO1 4H2BA 4ORBA 1USHA 1KBPA 4B2OA 3CK2A 2IAEC 1HP1A 3THOB 1OI8A 1SU1A 4NZVA 3V4YA 4O43A 2WDDA 4IYPC 3RL3A 3IVEA 1IT6A 3H62B 4OR9A 3IB8A 3H63A 4MOYA 1OIEA 3GVEA 4MP0A 2BDXA 3E0JA 3E7BA 3LL8A 1OIDA 2DXNA 4LU9A 4O24A 1S3MA 1S3NA 5JPEA 1T70A 3DSDA 3IB7A 1S8EA 4UT2A 4WWLA 1G5BA 1NNWA 1HO5A 4HD0A 4H2FA 4UWQA 3N5UA 5J28A 2KKNA 3H68A 3C9FA 3HVQA 3QFMA 1W24A 3KBPA 4XPNA 1Z2WA 2NYLC 5GTUA 4LACC 1FJMA 3H67A 3AUZA 4ORCA 3D03A 4MOVA 1MF8A 4H2IA 3H60A 4KKZA 2USHA 3P71C 4V0VA 1T71A 2HY1A 4TUIA 2HYPA 4FBKA 5DNYA 4H2GA 2WDFA 2A22A 4I5NC 4I5LC 4O4KA 2NPPC 2QFRA 2NXFA 3TGHA 3ZU0A 5B8IA 3JYFA 5C1VA 2HYOA 1U32A 4IL1A 3H66A 4ORAA 4ZVZA 2IE3C 5JPFA 3DSCA 3IVDA 1UF3A 3EGHA 1S70A 4LTYA 1QFCA 2WDEA 3E7AA 1M63A 1S95A 4UT3B 1QHWA 3H69A 4FBQA 2XMOA 1V73A 3QFOA 4G9JA 4O5GA 4Q7FA 2Z72A 1WARA 3THNA 4M0VA 3T1IA 1TCOA 3RL4A 3ZTVA 4DHLA 3K7WC 4JA9A 2DFJA 1JK7A 4FCXA 2CV9A 1Z2XA 4J6OA 1HPUA 2BCDA
chains in the Genus database with same CATH topology
4V0WA 3FGAC 2AHDA 2NYMC 3H64A 3ICFA 4KBPA 4TUGA 3PSOA 4H1YP 3FLOA 2BQ8X 2Q8UA 5EQVA 2QJCA 2QFPA 2Z1AA 5HPEA 3K7VC 3AV0A 2Z06A 5F3WA 4FBWA 2IE4C 4DT2A 2ZO9B 3C5WC 3PSNA 4H1SA 5IOHA 4UT3A 5INBA 4DSYA 2YVTA 4YKEA 3RL5A 2P6BA 2GJUA 2ZOAA 3EGGA 1S3LA 2O8GA 3H61A 3QFNA 5JJTA 1II7A 4F0ZA 2WDCA 1XZWA 2JOGA 2ZBMA 3RQZA 2DXLA 2YEQA 3DW8C 1AUIA 1UTEA 4ZX2A 4JA7A 1XM7A 3QG5C 4V0XA 2R17A 3QFKA 2O8AA 1WAO1 4H2BA 4ORBA 1USHA 1KBPA 4B2OA 3CK2A 2IAEC 1HP1A 3THOB 1OI8A 1SU1A 4NZVA 3V4YA 4O43A 2WDDA 4IYPC 3RL3A 3IVEA 1IT6A 3H62B 4OR9A 3IB8A 3H63A 4MOYA 1OIEA 3GVEA 4MP0A 2BDXA 3E0JA 3E7BA 3LL8A 1OIDA 2DXNA 4LU9A 4O24A 1S3MA 1S3NA 5JPEA 1T70A 3DSDA 3IB7A 1S8EA 4UT2A 4WWLA 1G5BA 1NNWA 1HO5A 4HD0A 4H2FA 4UWQA 3N5UA 5J28A 2KKNA 3H68A 3C9FA 3HVQA 3QFMA 1W24A 3KBPA 4XPNA 1Z2WA 2NYLC 5GTUA 4LACC 1FJMA 3H67A 3AUZA 4ORCA 3D03A 4MOVA 1MF8A 4H2IA 3H60A 4KKZA 2USHA 3P71C 4V0VA 1T71A 2HY1A 4TUIA 2HYPA 4FBKA 5DNYA 4H2GA 2WDFA 2A22A 4I5NC 4I5LC 4O4KA 2NPPC 2QFRA 2NXFA 3TGHA 3ZU0A 5B8IA 3JYFA 5C1VA 2HYOA 1U32A 4IL1A 3H66A 4ORAA 4ZVZA 2IE3C 5JPFA 3DSCA 3IVDA 1UF3A 3EGHA 1S70A 4LTYA 1QFCA 2WDEA 3E7AA 1M63A 1S95A 4UT3B 1QHWA 3H69A 4FBQA 2XMOA 1V73A 3QFOA 4G9JA 4O5GA 4Q7FA 2Z72A 1WARA 3THNA 4M0VA 3T1IA 1TCOA 3RL4A 3ZTVA 4DHLA 3K7WC 4JA9A 2DFJA 1JK7A 4FCXA 2CV9A 1Z2XA 4J6OA 1HPUA 2BCDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4V0W A;  3FGA C;  2AHD A;  2NYM C;  3H64 A;  3ICF A;  4KBP A;  4TUG A;  3PSO A;  4H1Y P;  2BQ8 X;  2Q8U A;  5EQV A;  2QJC A;  2QFP A;  2Z1A A;  5HPE A;  3K7V C;  3AV0 A;  2Z06 A;  5F3W A;  4FBW A;  2IE4 C;  4DT2 A;  3PSN A;  3C5W C;  4H1S A;  5IOH A;  4UT3 A;  5INB A;  4DSY A;  2YVT A;  4YKE A;  3RL5 A;  2P6B A;  2GJU A;  3EGG A;  1S3L A;  2O8G A;  3H61 A;  3QFN A;  5JJT A;  1II7 A;  4F0Z A;  2WDC A;  1XZW A;  2JOG A;  2ZBM A;  3RQZ A;  3DW8 C;  1AUI A;  1UTE A;  4ZX2 A;  4JA7 A;  1XM7 A;  3QG5 C;  4V0X A;  2R17 A;  3QFK A;  2O8A A;  1WAO 1;  4H2B A;  4ORB A;  1USH A;  1KBP A;  4B2O A;  3CK2 A;  2IAE C;  1HP1 A;  3THO B;  1OI8 A;  1SU1 A;  4NZV A;  3V4Y A;  4O43 A;  2WDD A;  4IYP C;  3RL3 A;  3IVE A;  1IT6 A;  3H62 B;  4OR9 A;  3IB8 A;  3H63 A;  4MOY A;  1OIE A;  3GVE A;  4MP0 A;  2BDX A;  3E7B A;  3LL8 A;  4UT2 A;  1OID A;  4LU9 A;  3RL4 A;  4O24 A;  1S3M A;  1S3N A;  5JPE A;  1T70 A;  3DSD A;  3IB7 A;  1S8E A;  4WWL A;  1G5B A;  1NNW A;  1HO5 A;  4HD0 A;  4H2F A;  4UWQ A;  3N5U A;  5J28 A;  2KKN A;  3H68 A;  3C9F A;  3HVQ A;  3QFM A;  1W24 A;  3KBP A;  4XPN A;  1Z2W A;  2NYL C;  5GTU A;  4LAC C;  1FJM A;  3H67 A;  3AUZ A;  4ORC A;  4MOV A;  1MF8 A;  4H2I A;  3H60 A;  4KKZ A;  2USH A;  3P71 C;  4V0V A;  1T71 A;  2HY1 A;  4TUI A;  2HYP A;  4FBK A;  5DNY A;  4H2G A;  2WDF A;  2A22 A;  4I5N C;  4I5L C;  4O4K A;  2NPP C;  2QFR A;  2NXF A;  3TGH A;  3ZU0 A;  5B8I A;  3JYF A;  5C1V A;  2HYO A;  1U32 A;  4IL1 A;  3H66 A;  4ORA A;  4ZVZ A;  2IE3 C;  5JPF A;  3DSC A;  3IVD A;  1UF3 A;  3EGH A;  1S70 A;  4LTY A;  1QFC A;  2WDE A;  3E7A A;  1M63 A;  1S95 A;  4UT3 B;  1QHW A;  3H69 A;  4FBQ A;  2XMO A;  1V73 A;  3QFO A;  4G9J A;  4O5G A;  4Q7F A;  2Z72 A;  1WAR A;  3THN A;  4M0V A;  3T1I A;  1TCO A;  3ZTV A;  4DHL A;  3K7W C;  4JA9 A;  2DFJ A;  1JK7 A;  4FCX A;  2CV9 A;  1Z2X A;  4J6O A;  1HPU A;  2BCD A; 
#chains in the Genus database with same CATH topology
 4V0W A;  3FGA C;  2AHD A;  2NYM C;  3H64 A;  3ICF A;  4KBP A;  4TUG A;  3PSO A;  4H1Y P;  3FLO A;  2BQ8 X;  2Q8U A;  5EQV A;  2QJC A;  2QFP A;  2Z1A A;  5HPE A;  3K7V C;  3AV0 A;  2Z06 A;  5F3W A;  4FBW A;  2IE4 C;  4DT2 A;  2ZO9 B;  3C5W C;  3PSN A;  4H1S A;  5IOH A;  4UT3 A;  5INB A;  4DSY A;  2YVT A;  4YKE A;  3RL5 A;  2P6B A;  2GJU A;  2ZOA A;  3EGG A;  1S3L A;  2O8G A;  3H61 A;  3QFN A;  5JJT A;  1II7 A;  4F0Z A;  2WDC A;  1XZW A;  2JOG A;  2ZBM A;  3RQZ A;  2DXL A;  2YEQ A;  3DW8 C;  1AUI A;  1UTE A;  4ZX2 A;  4JA7 A;  1XM7 A;  3QG5 C;  4V0X A;  2R17 A;  3QFK A;  2O8A A;  1WAO 1;  4H2B A;  4ORB A;  1USH A;  1KBP A;  4B2O A;  3CK2 A;  2IAE C;  1HP1 A;  3THO B;  1OI8 A;  1SU1 A;  4NZV A;  3V4Y A;  4O43 A;  2WDD A;  4IYP C;  3RL3 A;  3IVE A;  1IT6 A;  3H62 B;  4OR9 A;  3IB8 A;  3H63 A;  4MOY A;  1OIE A;  3GVE A;  4MP0 A;  2BDX A;  3E0J A;  3E7B A;  3LL8 A;  1OID A;  2DXN A;  4LU9 A;  4O24 A;  1S3M A;  1S3N A;  5JPE A;  1T70 A;  3DSD A;  3IB7 A;  1S8E A;  4UT2 A;  4WWL A;  1G5B A;  1NNW A;  1HO5 A;  4HD0 A;  4H2F A;  4UWQ A;  3N5U A;  5J28 A;  2KKN A;  3H68 A;  3C9F A;  3HVQ A;  3QFM A;  1W24 A;  3KBP A;  4XPN A;  1Z2W A;  2NYL C;  5GTU A;  4LAC C;  1FJM A;  3H67 A;  3AUZ A;  4ORC A;  3D03 A;  4MOV A;  1MF8 A;  4H2I A;  3H60 A;  4KKZ A;  2USH A;  3P71 C;  4V0V A;  1T71 A;  2HY1 A;  4TUI A;  2HYP A;  4FBK A;  5DNY A;  4H2G A;  2WDF A;  2A22 A;  4I5N C;  4I5L C;  4O4K A;  2NPP C;  2QFR A;  2NXF A;  3TGH A;  3ZU0 A;  5B8I A;  3JYF A;  5C1V A;  2HYO A;  1U32 A;  4IL1 A;  3H66 A;  4ORA A;  4ZVZ A;  2IE3 C;  5JPF A;  3DSC A;  3IVD A;  1UF3 A;  3EGH A;  1S70 A;  4LTY A;  1QFC A;  2WDE A;  3E7A A;  1M63 A;  1S95 A;  4UT3 B;  1QHW A;  3H69 A;  4FBQ A;  2XMO A;  1V73 A;  3QFO A;  4G9J A;  4O5G A;  4Q7F A;  2Z72 A;  1WAR A;  3THN A;  4M0V A;  3T1I A;  1TCO A;  3RL4 A;  3ZTV A;  4DHL A;  3K7W C;  4JA9 A;  2DFJ A;  1JK7 A;  4FCX A;  2CV9 A;  1Z2X A;  4J6O A;  1HPU A;  2BCD A; 
#chains in the Genus database with same CATH homology
 4V0W A;  3FGA C;  2AHD A;  2NYM C;  3H64 A;  3ICF A;  4KBP A;  4TUG A;  3PSO A;  4H1Y P;  3FLO A;  2BQ8 X;  2Q8U A;  5EQV A;  2QJC A;  2QFP A;  2Z1A A;  5HPE A;  3K7V C;  3AV0 A;  2Z06 A;  5F3W A;  4FBW A;  2IE4 C;  4DT2 A;  2ZO9 B;  3C5W C;  3PSN A;  4H1S A;  5IOH A;  4UT3 A;  5INB A;  4DSY A;  2YVT A;  4YKE A;  3RL5 A;  2P6B A;  2GJU A;  2ZOA A;  3EGG A;  1S3L A;  2O8G A;  3H61 A;  3QFN A;  5JJT A;  1II7 A;  4F0Z A;  2WDC A;  1XZW A;  2JOG A;  2ZBM A;  3RQZ A;  2DXL A;  2YEQ A;  3DW8 C;  1AUI A;  1UTE A;  4ZX2 A;  4JA7 A;  1XM7 A;  3QG5 C;  4V0X A;  2R17 A;  3QFK A;  2O8A A;  1WAO 1;  4H2B A;  4ORB A;  1USH A;  1KBP A;  4B2O A;  3CK2 A;  2IAE C;  1HP1 A;  3THO B;  1OI8 A;  1SU1 A;  4NZV A;  3V4Y A;  4O43 A;  2WDD A;  4IYP C;  3RL3 A;  3IVE A;  1IT6 A;  3H62 B;  4OR9 A;  3IB8 A;  3H63 A;  4MOY A;  1OIE A;  3GVE A;  4MP0 A;  2BDX A;  3E0J A;  3E7B A;  3LL8 A;  1OID A;  2DXN A;  4LU9 A;  4O24 A;  1S3M A;  1S3N A;  5JPE A;  1T70 A;  3DSD A;  3IB7 A;  1S8E A;  4UT2 A;  4WWL A;  1G5B A;  1NNW A;  1HO5 A;  4HD0 A;  4H2F A;  4UWQ A;  3N5U A;  5J28 A;  2KKN A;  3H68 A;  3C9F A;  3HVQ A;  3QFM A;  1W24 A;  3KBP A;  4XPN A;  1Z2W A;  2NYL C;  5GTU A;  4LAC C;  1FJM A;  3H67 A;  3AUZ A;  4ORC A;  3D03 A;  4MOV A;  1MF8 A;  4H2I A;  3H60 A;  4KKZ A;  2USH A;  3P71 C;  4V0V A;  1T71 A;  2HY1 A;  4TUI A;  2HYP A;  4FBK A;  5DNY A;  4H2G A;  2WDF A;  2A22 A;  4I5N C;  4I5L C;  4O4K A;  2NPP C;  2QFR A;  2NXF A;  3TGH A;  3ZU0 A;  5B8I A;  3JYF A;  5C1V A;  2HYO A;  1U32 A;  4IL1 A;  3H66 A;  4ORA A;  4ZVZ A;  2IE3 C;  5JPF A;  3DSC A;  3IVD A;  1UF3 A;  3EGH A;  1S70 A;  4LTY A;  1QFC A;  2WDE A;  3E7A A;  1M63 A;  1S95 A;  4UT3 B;  1QHW A;  3H69 A;  4FBQ A;  2XMO A;  1V73 A;  3QFO A;  4G9J A;  4O5G A;  4Q7F A;  2Z72 A;  1WAR A;  3THN A;  4M0V A;  3T1I A;  1TCO A;  3RL4 A;  3ZTV A;  4DHL A;  3K7W C;  4JA9 A;  2DFJ A;  1JK7 A;  4FCX A;  2CV9 A;  1Z2X A;  4J6O A;  1HPU A;  2BCD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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