1OIIA

Crystal structure of the alkylsulfatase atsk, a non-heme fe(ii) alphaketoglutarate dependent dioxygenase in complex with iron and alphaketoglutarate
Total Genus 80
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
80
sequence length
288
structure length
253
Chain Sequence
LELDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQSQEGFAKLLGEPVPVVDGTRYLLQLDRANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKLWAVHSNEVYETEHPVVRVHPISGERALQLGHFVKRIKGYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDVAIWDNRATQHYAVDDYGTQPRIVRRVTLAGEVPVGVDGQLSRTTRK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PUTATIVE ALKYLSULFATASE ATSK
publication title Crystal Structure of the Alkylsulfatase Atsk: Insights Into the Catalytic Mechanism of the Fe(II) Alpha-Ketoglutarate-Dependent Dioxygenase Superfamily
pubmed doi rcsb
total genus 80
structure length 253
sequence length 288
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1oiiA00
2WBPA 1NX8A 5J92A 1GY9A 1OIHA 4BGKA 1Y0ZA 4M27A 4C5WA 3O2GA 4M2EA 1DS0A 4M26A 1DRTA 1OTJA 1VZ4A 1GQWA 1OIIA 2R6SA 1NX4A 1DRYA 5KEUA 4CWDA 3V15A 1DS1A 3MS5A 4BHIA 4C8RA 2OG5A 1GVGA 4J5IA 4CVYA 4NE0A 2OG6A 2WBQA 4BG1A 2WBOA 3EATX 4OJ8A 3PVJA 4M2GA 4BHFA 4BGMA 1OIJC 2OG7A 1OIJA 1OIJB 1VZ5A 4M2FA 3R1JA 1JR7A 4M25A 4Y0EA 4FFAA 3V17A 2Q4AA 1OS7A 4M2CA 4BHGA 5HSXA 3SWTA 4YLMX 4M23A 3N6WA 4M2IA 1OIKA
chains in the Genus database with same CATH superfamily
2WBPA 1NX8A 5J92A 1GY9A 1OIHA 4BGKA 1PG6A 1YOXA 1Y0ZA 4M27A 4C5WA 3O2GA 4M2EA 1DS0A 4M26A 1DRTA 1OTJA 1VZ4A 1GQWA 1OIIA 2R6SA 1NX4A 1DRYA 5KEUA 4CWDA 3V15A 1DS1A 3MS5A 4BHIA 4C8RA 2OG5A 1GVGA 4J5IA 4CVYA 4NE0A 2OG6A 2WBQA 4BG1A 2WBOA 3EATX 4OJ8A 3PVJA 4M2GA 4BHFA 4BGMA 1OIJC 2OG7A 1OIJA 1OIJB 1VZ5A 4M2FA 3R1JA 1JR7A 4M25A 4Y0EA 4FFAA 3V17A 2Q4AA 1OS7A 4M2CA 4BHGA 5HSXA 3SWTA 4YLMX 4M23A 3N6WA 4M2IA 1OIKA
chains in the Genus database with same CATH topology
2WBPA 1NX8A 1OIHA 1Y0ZA 3O2GA 2YDEA 2CGOA 1OIIA 3V15A 4BHIA 2CGNA 2OG5A 4J5IA 4CVYA 2OG6A 1H2NA 4OJ8A 3KCXA 3R1JA 1JR7A 1YCIA 2Q4AA 2Y0IA 4M2CA 5HSXA 4BIOA 3N6WA 2XUMA 1GY9A 3OD4A 3P3NA 2YC0A 4M27A 2R6SA 4CWDA 1NX4A 4NE0A 2WBQA 4BG1A 1IZ3A 3EATX 1OIJC 3V17A 3D8CA 4BHGA 2WA3A 1H2MA 3SWTA 4M2IA 1H2LA 5J92A 1MZEA 4M2EA 1VZ4A 2WA4A 4C8RA 4AI8A 2ILMA 2WBOA 3PVJA 1OIJA 1OIJB 1VZ5A 4M2FA 1MZFA 4M25A 4Y0EA 4FFAA 2W0XA 4YLMX 4B7EA 4Z2WA 4BGKA 4B7KA 4JAAA 4C5WA 4M26A 1DS0A 1DRTA 1OTJA 1GQWA 5KEUA 1DRYA 1DS1A 3MS5A 1H2KA 4NR1A 4Z1VA 1GVGA 4BGMA 4M2GA 4BHFA 2OG7A 5JWPA 3KCYA 1OS7A 3P3PA 4M23A 1OIKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WBP A;  1NX8 A;  5J92 A;  1GY9 A;  1OIH A;  4BGK A;  1Y0Z A;  4M27 A;  4C5W A;  3O2G A;  4M2E A;  1DS0 A;  4M26 A;  1DRT A;  1OTJ A;  1VZ4 A;  1GQW A;  1OII A;  2R6S A;  1NX4 A;  1DRY A;  5KEU A;  4CWD A;  3V15 A;  1DS1 A;  3MS5 A;  4BHI A;  4C8R A;  2OG5 A;  1GVG A;  4J5I A;  4CVY A;  4NE0 A;  2OG6 A;  2WBQ A;  4BG1 A;  2WBO A;  3EAT X;  4OJ8 A;  3PVJ A;  4M2G A;  4BHF A;  4BGM A;  1OIJ C;  2OG7 A;  1OIJ A;  1OIJ B;  1VZ5 A;  4M2F A;  3R1J A;  1JR7 A;  4M25 A;  4Y0E A;  4FFA A;  3V17 A;  2Q4A A;  1OS7 A;  4M2C A;  4BHG A;  5HSX A;  3SWT A;  4YLM X;  4M23 A;  3N6W A;  4M2I A;  1OIK A; 
#chains in the Genus database with same CATH topology
 2WBP A;  1NX8 A;  5J92 A;  1GY9 A;  1OIH A;  4BGK A;  1PG6 A;  1YOX A;  1Y0Z A;  4M27 A;  4C5W A;  3O2G A;  4M2E A;  1DS0 A;  4M26 A;  1DRT A;  1OTJ A;  1VZ4 A;  1GQW A;  1OII A;  2R6S A;  1NX4 A;  1DRY A;  5KEU A;  4CWD A;  3V15 A;  1DS1 A;  3MS5 A;  4BHI A;  4C8R A;  2OG5 A;  1GVG A;  4J5I A;  4CVY A;  4NE0 A;  2OG6 A;  2WBQ A;  4BG1 A;  2WBO A;  3EAT X;  4OJ8 A;  3PVJ A;  4M2G A;  4BHF A;  4BGM A;  1OIJ C;  2OG7 A;  1OIJ A;  1OIJ B;  1VZ5 A;  4M2F A;  3R1J A;  1JR7 A;  4M25 A;  4Y0E A;  4FFA A;  3V17 A;  2Q4A A;  1OS7 A;  4M2C A;  4BHG A;  5HSX A;  3SWT A;  4YLM X;  4M23 A;  3N6W A;  4M2I A;  1OIK A; 
#chains in the Genus database with same CATH homology
 2WBP A;  1NX8 A;  1OIH A;  1Y0Z A;  3O2G A;  2YDE A;  2CGO A;  1OII A;  3V15 A;  4BHI A;  2CGN A;  2OG5 A;  4J5I A;  4CVY A;  2OG6 A;  1H2N A;  4OJ8 A;  3KCX A;  3R1J A;  1JR7 A;  1YCI A;  2Q4A A;  2Y0I A;  4M2C A;  5HSX A;  4BIO A;  3N6W A;  2XUM A;  1GY9 A;  3OD4 A;  3P3N A;  2YC0 A;  4M27 A;  2R6S A;  4CWD A;  1NX4 A;  4NE0 A;  2WBQ A;  4BG1 A;  1IZ3 A;  3EAT X;  1OIJ C;  3V17 A;  3D8C A;  4BHG A;  2WA3 A;  1H2M A;  3SWT A;  4M2I A;  1H2L A;  5J92 A;  1MZE A;  4M2E A;  1VZ4 A;  2WA4 A;  4C8R A;  4AI8 A;  2ILM A;  2WBO A;  3PVJ A;  1OIJ A;  1OIJ B;  1VZ5 A;  4M2F A;  1MZF A;  4M25 A;  4Y0E A;  4FFA A;  2W0X A;  4YLM X;  4B7E A;  4Z2W A;  4BGK A;  4B7K A;  4JAA A;  4C5W A;  4M26 A;  1DS0 A;  1DRT A;  1OTJ A;  1GQW A;  5KEU A;  1DRY A;  1DS1 A;  3MS5 A;  1H2K A;  4NR1 A;  4Z1V A;  1GVG A;  4BGM A;  4M2G A;  4BHF A;  2OG7 A;  5JWP A;  3KCY A;  1OS7 A;  3P3P A;  4M23 A;  1OIK A; 
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