1OIJC

Crystal structure of the alkylsulfatase atsk, a non-heme fe(ii) alphaketoglutarate dependent dioxygenase in complex with alphaketoglutarate
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
287
structure length
238
Chain Sequence
LELDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQSQEGFAKLLGEPVRANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKLWAVHSNEYETEHPVVRVHPISGERALQLGHFVKRIKGYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDVAIWDNRATQHYAVDDYGTQPRIVRRVTLAGEVPVGVDGYLSRTTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PUTATIVE ALKYLSULFATASE ATSK
publication title Crystal Structure of the Alkylsulfatase Atsk: Insights Into the Catalytic Mechanism of the Fe(II) Alpha-Ketoglutarate-Dependent Dioxygenase Superfamily
pubmed doi rcsb
total genus 77
structure length 238
sequence length 287
ec nomenclature
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1oijC00
1OIJB 4CVYA 4BHGA 4BHFA 1DRYA 1GVGA 1NX4A 2Q4AA 5KEUA 3R1JA 4M2EA 4Y0EA 3V15A 1VZ5A 2OG6A 3MS5A 4FFAA 2R6SA 1OIKA 1JR7A 1OTJA 5J92A 4BG1A 5HSXA 1OIJA 1OS7A 1OIIA 4M26A 4M25A 1DS1A 1VZ4A 1OIHA 4M27A 4M2GA 1NX8A 2WBPA 4BGMA 1OIJC 3N6WA 4M23A 3EATX 4OJ8A 4M2FA 2OG7A 1GY9A 4C8RA 1GQWA 4CWDA 4BHIA 4C5WA 3PVJA 4J5IA 3V17A 2OG5A 2WBOA 1Y0ZA 4BGKA 4M2CA 4YLMX 3SWTA 1DRTA 1DS0A 2WBQA 3O2GA 4M2IA 4NE0A
chains in the Genus database with same CATH superfamily
1OIJB 4CVYA 4BHGA 4BHFA 1DRYA 1GVGA 1NX4A 2Q4AA 5KEUA 3R1JA 4M2EA 4Y0EA 3V15A 1VZ5A 2OG6A 3MS5A 4FFAA 2R6SA 1OIKA 1JR7A 1OTJA 5J92A 4BG1A 5HSXA 1OIJA 1OS7A 1OIIA 4M26A 4M25A 1DS1A 1VZ4A 1OIHA 4M27A 4M2GA 1NX8A 2WBPA 4BGMA 1OIJC 3N6WA 4M23A 1PG6A 3EATX 4M2FA 4OJ8A 2OG7A 1GY9A 4C8RA 1GQWA 4CWDA 4BHIA 4C5WA 3PVJA 4J5IA 3V17A 1YOXA 2OG5A 1Y0ZA 2WBOA 4M2CA 4YLMX 4BGKA 1DRTA 1DS0A 2WBQA 3O2GA 4M2IA 3SWTA 4NE0A
chains in the Genus database with same CATH topology
4AI8A 4BHFA 2Q4AA 5KEUA 1VZ5A 2OG6A 4FFAA 1OIKA 1JR7A 5J92A 2W0XA 1IZ3A 1OIJA 1OIIA 4M26A 4M25A 1MZFA 2Y0IA 1H2KA 4M27A 4B7EA 2WBPA 4M23A 1GY9A 2WBOA 4M2CA 1DRTA 3R1JA 4Y0EA 5HSXA 3MS5A 4BG1A 2R6SA 1OTJA 4JAAA 3D8CA 4M2GA 1NX8A 1H2LA 4BGMA 1OIJC 3N6WA 3EATX 2OG7A 4C8RA 1GQWA 3SWTA 2OG5A 4BGKA 4YLMX 1DS0A 3V17A 2ILMA 2CGNA 1OIJB 4CVYA 4BHGA 1DRYA 2WA3A 1GVGA 3KCXA 2YDEA 5JWPA 1MZEA 1OIHA 4BIOA 1H2MA 4OJ8A 4M2FA 4NR1A 4BHIA 4C5WA 3P3NA 1Y0ZA 4Z2WA 2WBQA 4M2IA 2XUMA 3KCYA 2CGOA 4B7KA 1NX4A 4M2EA 1OS7A 3P3PA 4Z1VA 3OD4A 1DS1A 1VZ4A 2WA4A 1H2NA 2YC0A 4CWDA 3PVJA 4J5IA 3V15A 3O2GA 1YCIA 4NE0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OIJ B;  4CVY A;  4BHG A;  4BHF A;  1DRY A;  1GVG A;  1NX4 A;  2Q4A A;  5KEU A;  3R1J A;  4M2E A;  4Y0E A;  3V15 A;  1VZ5 A;  2OG6 A;  3MS5 A;  4FFA A;  2R6S A;  1OIK A;  1JR7 A;  1OTJ A;  5J92 A;  4BG1 A;  5HSX A;  1OIJ A;  1OS7 A;  1OII A;  4M26 A;  4M25 A;  1DS1 A;  1VZ4 A;  1OIH A;  4M27 A;  4M2G A;  1NX8 A;  2WBP A;  4BGM A;  1OIJ C;  3N6W A;  4M23 A;  3EAT X;  4OJ8 A;  4M2F A;  2OG7 A;  1GY9 A;  4C8R A;  1GQW A;  4CWD A;  4BHI A;  4C5W A;  3PVJ A;  4J5I A;  3V17 A;  2OG5 A;  2WBO A;  1Y0Z A;  4BGK A;  4M2C A;  4YLM X;  3SWT A;  1DRT A;  1DS0 A;  2WBQ A;  3O2G A;  4M2I A;  4NE0 A; 
#chains in the Genus database with same CATH topology
 1OIJ B;  4CVY A;  4BHG A;  4BHF A;  1DRY A;  1GVG A;  1NX4 A;  2Q4A A;  5KEU A;  3R1J A;  4M2E A;  4Y0E A;  3V15 A;  1VZ5 A;  2OG6 A;  3MS5 A;  4FFA A;  2R6S A;  1OIK A;  1JR7 A;  1OTJ A;  5J92 A;  4BG1 A;  5HSX A;  1OIJ A;  1OS7 A;  1OII A;  4M26 A;  4M25 A;  1DS1 A;  1VZ4 A;  1OIH A;  4M27 A;  4M2G A;  1NX8 A;  2WBP A;  4BGM A;  1OIJ C;  3N6W A;  4M23 A;  1PG6 A;  3EAT X;  4M2F A;  4OJ8 A;  2OG7 A;  1GY9 A;  4C8R A;  1GQW A;  4CWD A;  4BHI A;  4C5W A;  3PVJ A;  4J5I A;  3V17 A;  1YOX A;  2OG5 A;  1Y0Z A;  2WBO A;  4M2C A;  4YLM X;  4BGK A;  1DRT A;  1DS0 A;  2WBQ A;  3O2G A;  4M2I A;  3SWT A;  4NE0 A; 
#chains in the Genus database with same CATH homology
 4AI8 A;  4BHF A;  2Q4A A;  5KEU A;  1VZ5 A;  2OG6 A;  4FFA A;  1OIK A;  1JR7 A;  5J92 A;  2W0X A;  1IZ3 A;  1OIJ A;  1OII A;  4M26 A;  4M25 A;  1MZF A;  2Y0I A;  1H2K A;  4M27 A;  4B7E A;  2WBP A;  4M23 A;  1GY9 A;  2WBO A;  4M2C A;  1DRT A;  3R1J A;  4Y0E A;  5HSX A;  3MS5 A;  4BG1 A;  2R6S A;  1OTJ A;  4JAA A;  3D8C A;  4M2G A;  1NX8 A;  1H2L A;  4BGM A;  1OIJ C;  3N6W A;  3EAT X;  2OG7 A;  4C8R A;  1GQW A;  3SWT A;  2OG5 A;  4BGK A;  4YLM X;  1DS0 A;  3V17 A;  2ILM A;  2CGN A;  1OIJ B;  4CVY A;  4BHG A;  1DRY A;  2WA3 A;  1GVG A;  3KCX A;  2YDE A;  5JWP A;  1MZE A;  1OIH A;  4BIO A;  1H2M A;  4OJ8 A;  4M2F A;  4NR1 A;  4BHI A;  4C5W A;  3P3N A;  1Y0Z A;  4Z2W A;  2WBQ A;  4M2I A;  2XUM A;  3KCY A;  2CGO A;  4B7K A;  1NX4 A;  4M2E A;  1OS7 A;  3P3P A;  4Z1V A;  3OD4 A;  1DS1 A;  1VZ4 A;  2WA4 A;  1H2N A;  2YC0 A;  4CWD A;  3PVJ A;  4J5I A;  3V15 A;  3O2G A;  1YCI A;  4NE0 A; 
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