1OIKA

Crystal structure of the alkylsulfatase atsk, a non-heme fe(ii) alphaketoglutarate dependent dioxygenase in complex with fe, alphaketoglutarate and 2-ethyl-1-hexanesulfuric acid
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
287
structure length
240
Chain Sequence
LELDVHPVAGRIGAEIRGVKLSPDLDAATVEAIQAALVRHKVIFFRGQTHLDDQSQEGFAKLLGEPVAHRANSWHTDVTFVEAYPKASILRSVVAPASGGDTVWANTAAAYQELPEPLRELADKLWAVHSNRYETEHPVVRVHPISGERALQLGHFVKRIKGYSLADSQHLFAVLQGHVTRLENTVRWRWEAGDVAIWDNRATQHYAVDDYGTQPRIVRRVTLAGEVPVGVDGQLSRTTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords PUTATIVE ALKYLSULFATASE ATSK
publication title Crystal Structure of the Alkylsulfatase Atsk: Insights Into the Catalytic Mechanism of the Fe(II) Alpha-Ketoglutarate-Dependent Dioxygenase Superfamily
pubmed doi rcsb
total genus 77
structure length 240
sequence length 287
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1oikA00
4NE0A 1DRTA 1OTJA 2WBQA 4M26A 1NX4A 4M2FA 4M2IA 2OG6A 1OS7A 2OG5A 4C5WA 3SWTA 4M2EA 2Q4AA 1NX8A 4C8RA 1JR7A 2R6SA 1VZ5A 4M27A 3V17A 4BG1A 4Y0EA 4BHIA 4M2GA 1DRYA 4FFAA 3R1JA 4OJ8A 1VZ4A 4YLMX 3MS5A 4BGMA 1GQWA 3PVJA 1Y0ZA 4CWDA 4BGKA 3EATX 3V15A 2OG7A 4J5IA 4M2CA 1OIJC 2WBPA 4BHGA 1OIKA 1OIIA 1GVGA 4CVYA 1DS1A 5KEUA 4BHFA 4M23A 3O2GA 4M25A 5HSXA 5J92A 2WBOA 1DS0A 3N6WA 1OIJB 1OIHA 1GY9A 1OIJA
chains in the Genus database with same CATH superfamily
4NE0A 1DRTA 1OTJA 2WBQA 4M26A 1NX4A 4M2FA 4M2IA 2OG6A 1OS7A 2OG5A 4C5WA 3SWTA 4M2EA 2Q4AA 1NX8A 4C8RA 1JR7A 2R6SA 1VZ5A 4M27A 3V17A 4BG1A 4Y0EA 4BHIA 4M2GA 1DRYA 4FFAA 3R1JA 1YOXA 4OJ8A 1VZ4A 4YLMX 3MS5A 4BGMA 1GQWA 3PVJA 1Y0ZA 4CWDA 4BGKA 3EATX 3V15A 2OG7A 4J5IA 4M2CA 1PG6A 1OIJC 2WBPA 4BHGA 1OIKA 1OIIA 1GVGA 4CVYA 1DS1A 5KEUA 4BHFA 4M23A 3O2GA 4M25A 5HSXA 5J92A 2WBOA 1DS0A 3N6WA 1OIJB 1OIHA 1GY9A 1OIJA
chains in the Genus database with same CATH topology
1H2MA 4M26A 1NX4A 2OG6A 1OS7A 3V17A 5JWPA 1VZ4A 4YLMX 4BGKA 4BIOA 1MZFA 4BHGA 1OIKA 2CGNA 1GVGA 4CVYA 4B7EA 3N6WA 1OIHA 3D8CA 1H2KA 4NE0A 2XUMA 4M2IA 3SWTA 4C5WA 4C8RA 1VZ5A 4BG1A 4BHIA 2ILMA 4OJ8A 4JAAA 1IZ3A 4NR1A 3V15A 1DS1A 3KCXA 3O2GA 5J92A 1DS0A 1OIJB 1DRTA 1H2LA 1OTJA 2WBQA 1YCIA 2OG5A 4B7KA 4AI8A 2Q4AA 1NX8A 2R6SA 2WA4A 4BGMA 1GQWA 3PVJA 1Y0ZA 2OG7A 4M2CA 5KEUA 4M23A 4M25A 3OD4A 2WBOA 3P3PA 1GY9A 1OIJA 2CGOA 4M2FA 3KCYA 1MZEA 4M2EA 1JR7A 4M27A 4Y0EA 4M2GA 1DRYA 4FFAA 3R1JA 2YDEA 3P3NA 4Z1VA 1H2NA 3MS5A 4CWDA 3EATX 4J5IA 1OIJC 2WA3A 2WBPA 4Z2WA 1OIIA 2YC0A 4BHFA 5HSXA 2W0XA 2Y0IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NE0 A;  1DRT A;  1OTJ A;  2WBQ A;  4M26 A;  1NX4 A;  4M2F A;  4M2I A;  2OG6 A;  1OS7 A;  2OG5 A;  4C5W A;  3SWT A;  4M2E A;  2Q4A A;  1NX8 A;  4C8R A;  1JR7 A;  2R6S A;  1VZ5 A;  4M27 A;  3V17 A;  4BG1 A;  4Y0E A;  4BHI A;  4M2G A;  1DRY A;  4FFA A;  3R1J A;  4OJ8 A;  1VZ4 A;  4YLM X;  3MS5 A;  4BGM A;  1GQW A;  3PVJ A;  1Y0Z A;  4CWD A;  4BGK A;  3EAT X;  3V15 A;  2OG7 A;  4J5I A;  4M2C A;  1OIJ C;  2WBP A;  4BHG A;  1OIK A;  1OII A;  1GVG A;  4CVY A;  1DS1 A;  5KEU A;  4BHF A;  4M23 A;  3O2G A;  4M25 A;  5HSX A;  5J92 A;  2WBO A;  1DS0 A;  3N6W A;  1OIJ B;  1OIH A;  1GY9 A;  1OIJ A; 
#chains in the Genus database with same CATH topology
 4NE0 A;  1DRT A;  1OTJ A;  2WBQ A;  4M26 A;  1NX4 A;  4M2F A;  4M2I A;  2OG6 A;  1OS7 A;  2OG5 A;  4C5W A;  3SWT A;  4M2E A;  2Q4A A;  1NX8 A;  4C8R A;  1JR7 A;  2R6S A;  1VZ5 A;  4M27 A;  3V17 A;  4BG1 A;  4Y0E A;  4BHI A;  4M2G A;  1DRY A;  4FFA A;  3R1J A;  1YOX A;  4OJ8 A;  1VZ4 A;  4YLM X;  3MS5 A;  4BGM A;  1GQW A;  3PVJ A;  1Y0Z A;  4CWD A;  4BGK A;  3EAT X;  3V15 A;  2OG7 A;  4J5I A;  4M2C A;  1PG6 A;  1OIJ C;  2WBP A;  4BHG A;  1OIK A;  1OII A;  1GVG A;  4CVY A;  1DS1 A;  5KEU A;  4BHF A;  4M23 A;  3O2G A;  4M25 A;  5HSX A;  5J92 A;  2WBO A;  1DS0 A;  3N6W A;  1OIJ B;  1OIH A;  1GY9 A;  1OIJ A; 
#chains in the Genus database with same CATH homology
 1H2M A;  4M26 A;  1NX4 A;  2OG6 A;  1OS7 A;  3V17 A;  5JWP A;  1VZ4 A;  4YLM X;  4BGK A;  4BIO A;  1MZF A;  4BHG A;  1OIK A;  2CGN A;  1GVG A;  4CVY A;  4B7E A;  3N6W A;  1OIH A;  3D8C A;  1H2K A;  4NE0 A;  2XUM A;  4M2I A;  3SWT A;  4C5W A;  4C8R A;  1VZ5 A;  4BG1 A;  4BHI A;  2ILM A;  4OJ8 A;  4JAA A;  1IZ3 A;  4NR1 A;  3V15 A;  1DS1 A;  3KCX A;  3O2G A;  5J92 A;  1DS0 A;  1OIJ B;  1DRT A;  1H2L A;  1OTJ A;  2WBQ A;  1YCI A;  2OG5 A;  4B7K A;  4AI8 A;  2Q4A A;  1NX8 A;  2R6S A;  2WA4 A;  4BGM A;  1GQW A;  3PVJ A;  1Y0Z A;  2OG7 A;  4M2C A;  5KEU A;  4M23 A;  4M25 A;  3OD4 A;  2WBO A;  3P3P A;  1GY9 A;  1OIJ A;  2CGO A;  4M2F A;  3KCY A;  1MZE A;  4M2E A;  1JR7 A;  4M27 A;  4Y0E A;  4M2G A;  1DRY A;  4FFA A;  3R1J A;  2YDE A;  3P3N A;  4Z1V A;  1H2N A;  3MS5 A;  4CWD A;  3EAT X;  4J5I A;  1OIJ C;  2WA3 A;  2WBP A;  4Z2W A;  1OII A;  2YC0 A;  4BHF A;  5HSX A;  2W0X A;  2Y0I A; 
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