1OJQA

The crystal structure of c3stau2 from s. aureus
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
212
structure length
212
Chain Sequence
AETKNFTDLVEATKWGNSLIKSAKYSSKDKMAIYNYTKNSSPINTPLRSANGDVNKLSENIQEQVRQLDSTISKSVTPDSVYVYRLLNLDYLSSITGFTREDLHMLQQTNNGQYNEALVSKLNNLMNSRIYRENGYSSTQLVSGAALAGRPIELKLELPKGTKAAYIDSKELTAYPGQQEVLLPRGTEYAVGSVKLSDNKRKIIITAVVFKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ADP-RIBOSYLTRANSFERASE
publication title The Crystal Structure of C3Stau2 from Staphylococcus Aureus and its Complex with Nad
pubmed doi rcsb
source organism Staphylococcus aureus
molecule tags Transferase
total genus 69
structure length 212
sequence length 212
ec nomenclature
pdb deposition date 2003-07-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03496 ADPrib_exo_Tox ADP-ribosyltransferase exoenzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.176.10 Alpha Beta Alpha-Beta Complex Toxin ADP-ribosyltransferase; Chain A, domain 1 Toxin ADP-ribosyltransferase; Chain A, domain 1 1ojqA00
5BWMB 4H0XA 2C8CA 4PKRA 4H0TA 5H04A 4DV8A 1OG1A 5H03A 4FMLA 1UZIA 1PWVA 1GIQA 1PWPA 4XM8A 5DZQA 1J7NA 1OG3A 4GF1A 4H03A 1OJQA 2WN6A 4PKUA 4FK7A 1R45A 2J3XA 2A78B 1G24A 1PWWA 1GXZA 2C8BX 4PKTA 1GY0A 4FXQA 2C8DA 3NTSA 4PKVA 4TR5A 3U0JA 1ZXVA 2C8EE 2C8AA 1PWQA 2A9KB 1QS1A 5D1TA 2C8GA 1OJZA 3BUZA 4WF6A 1YQYA 5D1SA 1QS2A 4PKWA 4H0VA 2GWLA 4XM7A 1PWUA 4PKQA 4PKSA 4XSHB 2WN4A 3BW8A 2WN7A 2C89A 4XSGB 1OG4A 1GIRA 4ELNA 1JKYA 2WN5A 5D1UA 5GTTA 2J3VA 1GZEA 4H0YA 2J3ZA 2WN8A 4GY2A 1GXYA 1GZFA 1R4BA 2C8FE 2GWMA 2BOVB 2C8HA 4XM6A
chains in the Genus database with same CATH superfamily
5BWMB 4H0XA 2C8CA 4PKRA 4H0TA 5H04A 4DV8A 1OG1A 5H03A 4FMLA 1UZIA 1PWVA 1GIQA 1PWPA 4XM8A 5DZQA 1J7NA 1OG3A 4GF1A 4H03A 1OJQA 2WN6A 4PKUA 4FK7A 1R45A 2J3XA 2A78B 1G24A 1PWWA 1GXZA 2C8BX 4PKTA 1GY0A 4FXQA 2C8DA 3NTSA 4PKVA 4TR5A 3U0JA 1ZXVA 2C8EE 2C8AA 1PWQA 2A9KB 1QS1A 5D1TA 2C8GA 1OJZA 3BUZA 4WF6A 1YQYA 5D1SA 1QS2A 4PKWA 4H0VA 2GWLA 4XM7A 1PWUA 4PKQA 4PKSA 4XSHB 2WN4A 3BW8A 2WN7A 2C89A 4XSGB 1OG4A 1GIRA 4ELNA 1JKYA 2WN5A 5D1UA 5GTTA 2J3VA 1GZEA 4H0YA 2J3ZA 2WN8A 4GY2A 1GXYA 1GZFA 1R4BA 2C8FE 2GWMA 2BOVB 2C8HA 4XM6A
chains in the Genus database with same CATH topology
5BWMB 4H0XA 2C8CA 4PKRA 4H0TA 5H04A 4DV8A 1OG1A 5H03A 4FMLA 1UZIA 1PWVA 1GIQA 1PWPA 4XM8A 5DZQA 1J7NA 1OG3A 4GF1A 4H03A 1OJQA 2WN6A 4PKUA 4FK7A 1R45A 2J3XA 2A78B 1G24A 1PWWA 1GXZA 2C8BX 4PKTA 1GY0A 4FXQA 2C8DA 3NTSA 4PKVA 4TR5A 3U0JA 1ZXVA 2C8EE 2C8AA 1PWQA 2A9KB 1QS1A 5D1TA 2C8GA 1OJZA 3BUZA 4WF6A 1YQYA 5D1SA 1QS2A 4PKWA 4H0VA 2GWLA 4XM7A 1PWUA 4PKQA 4PKSA 4XSHB 2WN4A 3BW8A 2WN7A 2C89A 4XSGB 1OG4A 1GIRA 4ELNA 1JKYA 2WN5A 5D1UA 5GTTA 2J3VA 1GZEA 4H0YA 2J3ZA 2WN8A 4GY2A 1GXYA 1GZFA 1R4BA 2C8FE 2GWMA 2BOVB 2C8HA 4XM6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BWM B;  4H0X A;  2C8C A;  4PKR A;  4H0T A;  5H04 A;  4DV8 A;  1OG1 A;  5H03 A;  4FML A;  1UZI A;  1PWV A;  1GIQ A;  1PWP A;  4XM8 A;  5DZQ A;  1J7N A;  1OG3 A;  4GF1 A;  4H03 A;  1OJQ A;  2WN6 A;  4PKU A;  4FK7 A;  1R45 A;  2J3X A;  2A78 B;  1G24 A;  1PWW A;  1GXZ A;  2C8B X;  4PKT A;  1GY0 A;  4FXQ A;  2C8D A;  3NTS A;  4PKV A;  4TR5 A;  3U0J A;  1ZXV A;  2C8E E;  2C8A A;  1PWQ A;  2A9K B;  1QS1 A;  5D1T A;  2C8G A;  1OJZ A;  3BUZ A;  4WF6 A;  1YQY A;  5D1S A;  1QS2 A;  4PKW A;  4H0V A;  2GWL A;  4XM7 A;  1PWU A;  4PKQ A;  4PKS A;  4XSH B;  2WN4 A;  3BW8 A;  2WN7 A;  2C89 A;  4XSG B;  1OG4 A;  1GIR A;  4ELN A;  1JKY A;  2WN5 A;  5D1U A;  5GTT A;  2J3V A;  1GZE A;  4H0Y A;  2J3Z A;  2WN8 A;  4GY2 A;  1GXY A;  1GZF A;  1R4B A;  2C8F E;  2GWM A;  2BOV B;  2C8H A;  4XM6 A; 
#chains in the Genus database with same CATH topology
 5BWM B;  4H0X A;  2C8C A;  4PKR A;  4H0T A;  5H04 A;  4DV8 A;  1OG1 A;  5H03 A;  4FML A;  1UZI A;  1PWV A;  1GIQ A;  1PWP A;  4XM8 A;  5DZQ A;  1J7N A;  1OG3 A;  4GF1 A;  4H03 A;  1OJQ A;  2WN6 A;  4PKU A;  4FK7 A;  1R45 A;  2J3X A;  2A78 B;  1G24 A;  1PWW A;  1GXZ A;  2C8B X;  4PKT A;  1GY0 A;  4FXQ A;  2C8D A;  3NTS A;  4PKV A;  4TR5 A;  3U0J A;  1ZXV A;  2C8E E;  2C8A A;  1PWQ A;  2A9K B;  1QS1 A;  5D1T A;  2C8G A;  1OJZ A;  3BUZ A;  4WF6 A;  1YQY A;  5D1S A;  1QS2 A;  4PKW A;  4H0V A;  2GWL A;  4XM7 A;  1PWU A;  4PKQ A;  4PKS A;  4XSH B;  2WN4 A;  3BW8 A;  2WN7 A;  2C89 A;  4XSG B;  1OG4 A;  1GIR A;  4ELN A;  1JKY A;  2WN5 A;  5D1U A;  5GTT A;  2J3V A;  1GZE A;  4H0Y A;  2J3Z A;  2WN8 A;  4GY2 A;  1GXY A;  1GZF A;  1R4B A;  2C8F E;  2GWM A;  2BOV B;  2C8H A;  4XM6 A; 
#chains in the Genus database with same CATH homology
 5BWM B;  4H0X A;  2C8C A;  4PKR A;  4H0T A;  5H04 A;  4DV8 A;  1OG1 A;  5H03 A;  4FML A;  1UZI A;  1PWV A;  1GIQ A;  1PWP A;  4XM8 A;  5DZQ A;  1J7N A;  1OG3 A;  4GF1 A;  4H03 A;  1OJQ A;  2WN6 A;  4PKU A;  4FK7 A;  1R45 A;  2J3X A;  2A78 B;  1G24 A;  1PWW A;  1GXZ A;  2C8B X;  4PKT A;  1GY0 A;  4FXQ A;  2C8D A;  3NTS A;  4PKV A;  4TR5 A;  3U0J A;  1ZXV A;  2C8E E;  2C8A A;  1PWQ A;  2A9K B;  1QS1 A;  5D1T A;  2C8G A;  1OJZ A;  3BUZ A;  4WF6 A;  1YQY A;  5D1S A;  1QS2 A;  4PKW A;  4H0V A;  2GWL A;  4XM7 A;  1PWU A;  4PKQ A;  4PKS A;  4XSH B;  2WN4 A;  3BW8 A;  2WN7 A;  2C89 A;  4XSG B;  1OG4 A;  1GIR A;  4ELN A;  1JKY A;  2WN5 A;  5D1U A;  5GTT A;  2J3V A;  1GZE A;  4H0Y A;  2J3Z A;  2WN8 A;  4GY2 A;  1GXY A;  1GZF A;  1R4B A;  2C8F E;  2GWM A;  2BOV B;  2C8H A;  4XM6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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