1OJVA

Decay accelerating factor (cd55): the structure of an intact human complement regulator.
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
254
structure length
254
Chain Sequence
MQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRGC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Regulator of complement pathway
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
publication title Complement Regulation at the Molecular Level: The Structure of Decay-Accelerating Factor
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ojvA04
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ojvA03
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ojvA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ojvA02
1U5MA 1HFIA 1Z92B 5HYUB 2CG6A 1TPGA 1O9AA 2EC3A 2CG7A 4FXGG 4B2SA 1TPMA 5JPMG 1MD7A 1G4GA 4K12A 3RJ3D 1ZJKA 1QO6A 1QUBA 3GXEA 3IU3I 1OK9A 2JRAA 2IZ3A 1GKGA 1OK3A 1ELVA 2KMSA 3IX0A 1H2QP 3EJHA 4AYDA 4KKDA 2XRBA 1UOTP 1E5GA 3CALA 1Q3XA 1OJWA 1VVCA 2IZ4A 1MD8A 3R62A 4F4OC 4AYMA 3L89M 1G4FA 2RLQA 2MCZA 1GPZA 2UWNA 3ERBA 4IGDA 4J38B 3TVJA 1PPQA 3MQLA 2ERJA 2JGWA 4PZ5A 4JHSA 1HFHA 4CSYA 4ZH1D 1LY2A 2JGXA 3OXUD 5HZPB 2RKYA 4LOTA 1OJYA 2W80A 3KZJA 2A55A 1QGBA 1CKLA 2RL0A 2O39C 2XQWC 3KXVA 2BZMA 1H2PP 1TPNA 3NFPI 4C16A 1SS2A 1FBRA 2YRAA 4AYEA 2RKZA 2B5ID 2CKUA 2WIIC 3GOVA 1H03P 1HCCA 3OEDC 1VVDA 3OP8A 1C1ZA 2W81A 2RLPA 1OK2A 4ONTD 2YBYA 4WJG2 1NWVA 3ZRZA 5HYPA 4LOSA 3INBC 4DJZA 4B2RA 2MCYA 2QY0A 5HYTB 2KRIA 4A5WB 2XWBF 1SRZA 2V8EA 2XRDA 1GKNA 3O8EB 3ZD1A 2XWJI 4AYIA 3M7PA 1E8BA 1H04P 2LOJA 1OJVA 1E88A 5I0QB 4MUCA 2EHFA 3ZD2A 1OK1A 5FO8C 3T5OA 1GHQB 4YNXA 3SW0X 2G7IA
chains in the Genus database with same CATH superfamily
1U5MA 1HFIA 1Z92B 5HYUB 2CG6A 3ZLDA 1TPGA 3F6KA 1O9AA 2EC3A 2CG7A 4FXGG 4B2SA 1TPMA 5JPMG 1MD7A 1G4GA 4K12A 3K3TA 3RJ3D 1ZJKA 1QO6A 1QUBA 3GXEA 3IU3I 4N7EA 1OK9A 2JRAA 2IZ3A 1GKGA 1OK3A 1ELVA 2KMSA 3IX0A 1H2QP 3EJHA 5DN4A 4AYDA 3WSYA 2Y8SA 4KKDA 2XRBA 1UOTP 3ZLEA 1E5GA 3CALA 3FGTA 5DN5A 1Q3XA 1OJWA 1VVCA 2IZ4A 1MD8A 3R62A 4APLA 4F4OC 4AYMA 3L89M 1G4FA 3FGRA 2RLQA 2MCZA 1GPZA 2UWNA 3ERBA 4IGDA 4J38B 3TVJA 1PPQA 3MQLA 2ERJA 2JGWA 4PZ5A 4JHSA 1HFHA 4CSYA 4ZH1D 1LY2A 2JGXA 3OXUD 5HZPB 2RKYA 4LOTA 1OJYA 2W80A 2I2LA 3KZJA 2A55A 1QGBA 1CKLA 2RL0A 2O39C 2XQWC 3KXVA 3CI0J 2BZMA 1H2PP 1TPNA 3NFPI 4C16A 2ZYCA 1SS2A 1FBRA 2YRAA 4AYEA 2RKZA 2B5ID 2CKUA 2WIIC 3VWOA 3GOVA 1H03P 1HCCA 2Y8RA 3OEDC 1VVDA 3OP8A 1C1ZA 2W81A 2RLPA 4YIZA 1OK2A 1RLHA 4ONTD 4BWCA 2YBYA 2Y8TA 4WJG2 1NWVA 3ZRZA 5HYPA 4LOSA 3INBC 2X2ZA 4DJZA 4MSLA 4B2RA 2MCYA 2QY0A 5HYTB 2KRIA 4A5WB 2XWBF 1SRZA 2V8EA 3WSXA 2XRDA 1GKNA 3O8EB 3ZD1A 2XWJI 4AYIA 3NJAA 3M7PA 1E8BA 1H04P 2LOJA 1OJVA 1E88A 5I0QB 4MUCA 2EHFA 3ZD2A 1OK1A 5FO8C 3T5OA 4PO7A 1GHQB 4YNXA 3SW0X 2G7IA
chains in the Genus database with same CATH topology
1U5MA 1HFIA 1Z92B 5HYUB 2CG6A 1TPGA 1O9AA 2EC3A 2CG7A 4FXGG 4B2SA 1TPMA 5JPMG 1MD7A 1G4GA 4K12A 3RJ3D 1ZJKA 1QO6A 1QUBA 3GXEA 3IU3I 1OK9A 2JRAA 2IZ3A 1GKGA 1OK3A 1ELVA 2KMSA 3IX0A 1H2QP 3EJHA 4AYDA 4KKDA 2XRBA 1UOTP 1E5GA 3CALA 1Q3XA 1OJWA 1VVCA 2IZ4A 1MD8A 3R62A 4F4OC 4AYMA 3L89M 1G4FA 2RLQA 2MCZA 1GPZA 2UWNA 3ERBA 4IGDA 4J38B 3TVJA 1PPQA 3MQLA 2ERJA 2JGWA 4PZ5A 4JHSA 1HFHA 4CSYA 4ZH1D 1LY2A 2JGXA 3OXUD 5HZPB 2RKYA 4LOTA 1OJYA 2W80A 3KZJA 2A55A 1QGBA 1CKLA 2RL0A 2O39C 2XQWC 3KXVA 2BZMA 1H2PP 1TPNA 3NFPI 4C16A 1SS2A 1FBRA 2YRAA 4AYEA 2RKZA 2B5ID 2CKUA 2WIIC 3GOVA 1H03P 1HCCA 3OEDC 1VVDA 3OP8A 1C1ZA 2W81A 2RLPA 1OK2A 4ONTD 2YBYA 4WJG2 1NWVA 3ZRZA 5HYPA 4LOSA 3INBC 4DJZA 4B2RA 2MCYA 2QY0A 5HYTB 2KRIA 4A5WB 2XWBF 1SRZA 2V8EA 2XRDA 1GKNA 3O8EB 3ZD1A 2XWJI 4AYIA 3M7PA 1E8BA 1H04P 2LOJA 1OJVA 1E88A 5I0QB 4MUCA 2EHFA 3ZD2A 1OK1A 5FO8C 3T5OA 1GHQB 4YNXA 3SW0X 2G7IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1U5M A;  1HFI A;  1Z92 B;  5HYU B;  2CG6 A;  1TPG A;  1O9A A;  2EC3 A;  2CG7 A;  4FXG G;  4B2S A;  1TPM A;  5JPM G;  1MD7 A;  1G4G A;  4K12 A;  3RJ3 D;  1ZJK A;  1QO6 A;  1QUB A;  3GXE A;  3IU3 I;  1OK9 A;  2JRA A;  2IZ3 A;  1GKG A;  1OK3 A;  1ELV A;  2KMS A;  3IX0 A;  1H2Q P;  3EJH A;  4AYD A;  4KKD A;  2XRB A;  1UOT P;  1E5G A;  3CAL A;  1Q3X A;  1OJW A;  1VVC A;  2IZ4 A;  1MD8 A;  3R62 A;  4F4O C;  4AYM A;  3L89 M;  1G4F A;  2RLQ A;  2MCZ A;  1GPZ A;  2UWN A;  3ERB A;  4IGD A;  4J38 B;  3TVJ A;  1PPQ A;  3MQL A;  2ERJ A;  2JGW A;  4PZ5 A;  4JHS A;  1HFH A;  4CSY A;  4ZH1 D;  1LY2 A;  2JGX A;  3OXU D;  5HZP B;  2RKY A;  4LOT A;  1OJY A;  2W80 A;  3KZJ A;  2A55 A;  1QGB A;  1CKL A;  2RL0 A;  2O39 C;  2XQW C;  3KXV A;  2BZM A;  1H2P P;  1TPN A;  3NFP I;  4C16 A;  1SS2 A;  1FBR A;  2YRA A;  4AYE A;  2RKZ A;  2B5I D;  2CKU A;  2WII C;  3GOV A;  1H03 P;  1HCC A;  3OED C;  1VVD A;  3OP8 A;  1C1Z A;  2W81 A;  2RLP A;  1OK2 A;  4ONT D;  2YBY A;  4WJG 2;  1NWV A;  3ZRZ A;  5HYP A;  4LOS A;  3INB C;  4DJZ A;  4B2R A;  2MCY A;  2QY0 A;  5HYT B;  2KRI A;  4A5W B;  2XWB F;  1SRZ A;  2V8E A;  2XRD A;  1GKN A;  3O8E B;  3ZD1 A;  2XWJ I;  4AYI A;  3M7P A;  1E8B A;  1H04 P;  2LOJ A;  1OJV A;  1E88 A;  5I0Q B;  4MUC A;  2EHF A;  3ZD2 A;  1OK1 A;  5FO8 C;  3T5O A;  1GHQ B;  4YNX A;  3SW0 X;  2G7I A; 
#chains in the Genus database with same CATH topology
 1U5M A;  1HFI A;  1Z92 B;  5HYU B;  2CG6 A;  3ZLD A;  1TPG A;  3F6K A;  1O9A A;  2EC3 A;  2CG7 A;  4FXG G;  4B2S A;  1TPM A;  5JPM G;  1MD7 A;  1G4G A;  4K12 A;  3K3T A;  3RJ3 D;  1ZJK A;  1QO6 A;  1QUB A;  3GXE A;  3IU3 I;  4N7E A;  1OK9 A;  2JRA A;  2IZ3 A;  1GKG A;  1OK3 A;  1ELV A;  2KMS A;  3IX0 A;  1H2Q P;  3EJH A;  5DN4 A;  4AYD A;  3WSY A;  2Y8S A;  4KKD A;  2XRB A;  1UOT P;  3ZLE A;  1E5G A;  3CAL A;  3FGT A;  5DN5 A;  1Q3X A;  1OJW A;  1VVC A;  2IZ4 A;  1MD8 A;  3R62 A;  4APL A;  4F4O C;  4AYM A;  3L89 M;  1G4F A;  3FGR A;  2RLQ A;  2MCZ A;  1GPZ A;  2UWN A;  3ERB A;  4IGD A;  4J38 B;  3TVJ A;  1PPQ A;  3MQL A;  2ERJ A;  2JGW A;  4PZ5 A;  4JHS A;  1HFH A;  4CSY A;  4ZH1 D;  1LY2 A;  2JGX A;  3OXU D;  5HZP B;  2RKY A;  4LOT A;  1OJY A;  2W80 A;  2I2L A;  3KZJ A;  2A55 A;  1QGB A;  1CKL A;  2RL0 A;  2O39 C;  2XQW C;  3KXV A;  3CI0 J;  2BZM A;  1H2P P;  1TPN A;  3NFP I;  4C16 A;  2ZYC A;  1SS2 A;  1FBR A;  2YRA A;  4AYE A;  2RKZ A;  2B5I D;  2CKU A;  2WII C;  3VWO A;  3GOV A;  1H03 P;  1HCC A;  2Y8R A;  3OED C;  1VVD A;  3OP8 A;  1C1Z A;  2W81 A;  2RLP A;  4YIZ A;  1OK2 A;  1RLH A;  4ONT D;  4BWC A;  2YBY A;  2Y8T A;  4WJG 2;  1NWV A;  3ZRZ A;  5HYP A;  4LOS A;  3INB C;  2X2Z A;  4DJZ A;  4MSL A;  4B2R A;  2MCY A;  2QY0 A;  5HYT B;  2KRI A;  4A5W B;  2XWB F;  1SRZ A;  2V8E A;  3WSX A;  2XRD A;  1GKN A;  3O8E B;  3ZD1 A;  2XWJ I;  4AYI A;  3NJA A;  3M7P A;  1E8B A;  1H04 P;  2LOJ A;  1OJV A;  1E88 A;  5I0Q B;  4MUC A;  2EHF A;  3ZD2 A;  1OK1 A;  5FO8 C;  3T5O A;  4PO7 A;  1GHQ B;  4YNX A;  3SW0 X;  2G7I A; 
#chains in the Genus database with same CATH homology
 1U5M A;  1HFI A;  1Z92 B;  5HYU B;  2CG6 A;  1TPG A;  1O9A A;  2EC3 A;  2CG7 A;  4FXG G;  4B2S A;  1TPM A;  5JPM G;  1MD7 A;  1G4G A;  4K12 A;  3RJ3 D;  1ZJK A;  1QO6 A;  1QUB A;  3GXE A;  3IU3 I;  1OK9 A;  2JRA A;  2IZ3 A;  1GKG A;  1OK3 A;  1ELV A;  2KMS A;  3IX0 A;  1H2Q P;  3EJH A;  4AYD A;  4KKD A;  2XRB A;  1UOT P;  1E5G A;  3CAL A;  1Q3X A;  1OJW A;  1VVC A;  2IZ4 A;  1MD8 A;  3R62 A;  4F4O C;  4AYM A;  3L89 M;  1G4F A;  2RLQ A;  2MCZ A;  1GPZ A;  2UWN A;  3ERB A;  4IGD A;  4J38 B;  3TVJ A;  1PPQ A;  3MQL A;  2ERJ A;  2JGW A;  4PZ5 A;  4JHS A;  1HFH A;  4CSY A;  4ZH1 D;  1LY2 A;  2JGX A;  3OXU D;  5HZP B;  2RKY A;  4LOT A;  1OJY A;  2W80 A;  3KZJ A;  2A55 A;  1QGB A;  1CKL A;  2RL0 A;  2O39 C;  2XQW C;  3KXV A;  2BZM A;  1H2P P;  1TPN A;  3NFP I;  4C16 A;  1SS2 A;  1FBR A;  2YRA A;  4AYE A;  2RKZ A;  2B5I D;  2CKU A;  2WII C;  3GOV A;  1H03 P;  1HCC A;  3OED C;  1VVD A;  3OP8 A;  1C1Z A;  2W81 A;  2RLP A;  1OK2 A;  4ONT D;  2YBY A;  4WJG 2;  1NWV A;  3ZRZ A;  5HYP A;  4LOS A;  3INB C;  4DJZ A;  4B2R A;  2MCY A;  2QY0 A;  5HYT B;  2KRI A;  4A5W B;  2XWB F;  1SRZ A;  2V8E A;  2XRD A;  1GKN A;  3O8E B;  3ZD1 A;  2XWJ I;  4AYI A;  3M7P A;  1E8B A;  1H04 P;  2LOJ A;  1OJV A;  1E88 A;  5I0Q B;  4MUC A;  2EHF A;  3ZD2 A;  1OK1 A;  5FO8 C;  3T5O A;  1GHQ B;  4YNX A;  3SW0 X;  2G7I A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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