1OKIA

Crystal structure of truncated human beta-b1-crystallin
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
183
structure length
182
Chain Sequence
PPGNYRLVVFELENFQGRRAEFSGESNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Eye lens protein
molecule keywords BETA CRYSTALLIN B1
publication title Crystal Structure of Truncated Human Beta-B1-Crystallin
pubmed doi rcsb
source organism Homo sapiens
total genus 41
structure length 182
sequence length 183
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1okiA01
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1okiA02
2JDFA 4W9BA 4AKAA 1ZIQA 3ENUA 4PSPA 1BD7A 3HZBA 2G98A 2KFBA 2A5MA 4PSRA 4EL6A 2BB2A 2NBRA 1A5DA 3ENTA 3I9HA 1H4AX 1ZIEA 2BV2A 2B1OA 1PRSA 1M8UA 3IAJA 2JDGA 2K1WA 1BLBA 1HK0X 4JGFA 1HDFA 3HZ2A 4FD9A 1YHPA 4GR7A 4W9AA 1NPSA 3SNYA 3SO0A 1ZGTA 1ZIRA 3SNZA 5HT8A 1E7NA 3LWKA 1AMMA 1DSLA 1I5IA 2DADA 2M3UA 3CW3A 2KP5A 1A45A 1ZWOA 1A7HA 1AG4A 2V2UA 3QK3A 5HT9A 1GAMA 2M3CA 1YTQA 4IAUA 1HA4A 2K1XA 1ZWMA 1GCSA 2M3TA 3SO1A 1OKIA 4GCRA 4NI3A 1PRRA 1ELPA
chains in the Genus database with same CATH superfamily
2JDFA 4EL6A 2BV2A 1M8UA 2K1WA 1BHUA 4JGFA 4GR7A 3SNYA 5HT8A 1F53A 1A45A 5HT9A 1ZWMA 4NI3A 1PRRA 1AG4A 4AKAA 1BD7A 2KFBA 2NBRA 1A5DA 1ZIEA 4FD9A 1E7NA 1I5IA 2V2UA 1A7HA 1G6EA 3QK3A 2M3CA 2K1XA 1GCSA 3SO1A 3ENTA 3ENUA 4PSPA 3HZBA 2G98A 2A5MA 2BB2A 3I9HA 1H4AX 1HK0X 1HDFA 3HZ2A 4W9AA 1YHPA 3SO0A 1NPSA 1ZIRA 1GH5A 1AMMA 1DSLA 1WKTA 4IAUA 1HA4A 2M3TA 1C01A 4W9BA 1ZIQA 4PSRA 3IAJA 2B1OA 1PRSA 2JDGA 1BLBA 1ZGTA 3SNZA 3LWKA 2DADA 2M3UA 3CW3A 2KP5A 1ZWOA 1GAMA 1YTQA 1OKIA 3UJZA 4GCRA 1ELPA
chains in the Genus database with same CATH topology
2JDFA 4W9BA 4AKAA 1ZIQA 3ENUA 4PSPA 1BD7A 3HZBA 2G98A 2KFBA 2A5MA 4PSRA 4EL6A 2BB2A 2NBRA 1A5DA 3ENTA 3I9HA 1H4AX 1ZIEA 2BV2A 2B1OA 1PRSA 1M8UA 3IAJA 2JDGA 2K1WA 1BLBA 1HK0X 4JGFA 1HDFA 3HZ2A 4FD9A 1YHPA 4GR7A 4W9AA 1NPSA 3SNYA 3SO0A 1ZGTA 1ZIRA 3SNZA 5HT8A 1E7NA 3LWKA 1AMMA 1DSLA 1I5IA 2DADA 2M3UA 3CW3A 2KP5A 1A45A 1ZWOA 1A7HA 1AG4A 2V2UA 3QK3A 5HT9A 1GAMA 2M3CA 1YTQA 4IAUA 1HA4A 2K1XA 1ZWMA 1GCSA 2M3TA 3SO1A 1OKIA 4GCRA 4NI3A 1PRRA 1ELPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JDF A;  4W9B A;  4AKA A;  1ZIQ A;  3ENU A;  4PSP A;  1BD7 A;  3HZB A;  2G98 A;  2KFB A;  2A5M A;  4PSR A;  4EL6 A;  2BB2 A;  2NBR A;  1A5D A;  3ENT A;  3I9H A;  1H4A X;  1ZIE A;  2BV2 A;  2B1O A;  1PRS A;  1M8U A;  3IAJ A;  2JDG A;  2K1W A;  1BLB A;  1HK0 X;  4JGF A;  1HDF A;  3HZ2 A;  4FD9 A;  1YHP A;  4GR7 A;  4W9A A;  1NPS A;  3SNY A;  3SO0 A;  1ZGT A;  1ZIR A;  3SNZ A;  5HT8 A;  1E7N A;  3LWK A;  1AMM A;  1DSL A;  1I5I A;  2DAD A;  2M3U A;  3CW3 A;  2KP5 A;  1A45 A;  1ZWO A;  1A7H A;  1AG4 A;  2V2U A;  3QK3 A;  5HT9 A;  1GAM A;  2M3C A;  1YTQ A;  4IAU A;  1HA4 A;  2K1X A;  1ZWM A;  1GCS A;  2M3T A;  3SO1 A;  1OKI A;  4GCR A;  4NI3 A;  1PRR A;  1ELP A; 
#chains in the Genus database with same CATH topology
 2JDF A;  4EL6 A;  2BV2 A;  1M8U A;  2K1W A;  1BHU A;  4JGF A;  4GR7 A;  3SNY A;  5HT8 A;  1F53 A;  1A45 A;  5HT9 A;  1ZWM A;  4NI3 A;  1PRR A;  1AG4 A;  4AKA A;  1BD7 A;  2KFB A;  2NBR A;  1A5D A;  1ZIE A;  4FD9 A;  1E7N A;  1I5I A;  2V2U A;  1A7H A;  1G6E A;  3QK3 A;  2M3C A;  2K1X A;  1GCS A;  3SO1 A;  3ENT A;  3ENU A;  4PSP A;  3HZB A;  2G98 A;  2A5M A;  2BB2 A;  3I9H A;  1H4A X;  1HK0 X;  1HDF A;  3HZ2 A;  4W9A A;  1YHP A;  3SO0 A;  1NPS A;  1ZIR A;  1GH5 A;  1AMM A;  1DSL A;  1WKT A;  4IAU A;  1HA4 A;  2M3T A;  1C01 A;  4W9B A;  1ZIQ A;  4PSR A;  3IAJ A;  2B1O A;  1PRS A;  2JDG A;  1BLB A;  1ZGT A;  3SNZ A;  3LWK A;  2DAD A;  2M3U A;  3CW3 A;  2KP5 A;  1ZWO A;  1GAM A;  1YTQ A;  1OKI A;  3UJZ A;  4GCR A;  1ELP A; 
#chains in the Genus database with same CATH homology
 2JDF A;  4W9B A;  4AKA A;  1ZIQ A;  3ENU A;  4PSP A;  1BD7 A;  3HZB A;  2G98 A;  2KFB A;  2A5M A;  4PSR A;  4EL6 A;  2BB2 A;  2NBR A;  1A5D A;  3ENT A;  3I9H A;  1H4A X;  1ZIE A;  2BV2 A;  2B1O A;  1PRS A;  1M8U A;  3IAJ A;  2JDG A;  2K1W A;  1BLB A;  1HK0 X;  4JGF A;  1HDF A;  3HZ2 A;  4FD9 A;  1YHP A;  4GR7 A;  4W9A A;  1NPS A;  3SNY A;  3SO0 A;  1ZGT A;  1ZIR A;  3SNZ A;  5HT8 A;  1E7N A;  3LWK A;  1AMM A;  1DSL A;  1I5I A;  2DAD A;  2M3U A;  3CW3 A;  2KP5 A;  1A45 A;  1ZWO A;  1A7H A;  1AG4 A;  2V2U A;  3QK3 A;  5HT9 A;  1GAM A;  2M3C A;  1YTQ A;  4IAU A;  1HA4 A;  2K1X A;  1ZWM A;  1GCS A;  2M3T A;  3SO1 A;  1OKI A;  4GCR A;  4NI3 A;  1PRR A;  1ELP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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