1OMUA

Solution structure of ovomucoid (third domain) from domestic turkey (298k, ph 4.1) (nmr, 50 structures) (refined model using network editing analysis)
Total Genus 6
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
56
structure length
56
Chain Sequence
LAAVSVDCSEYPKPACTLEYRPLCGSDNKTYGNKCNFCNAVVESNGTLTLSHFGKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords OVOMUCOID (THIRD DOMAIN)
publication title Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
pubmed rcsb
source organism Meleagris gallopavo
molecule tags Serine proteinase inhibitor
total genus 6
structure length 56
sequence length 56
ec nomenclature
pdb deposition date 1995-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00050 Kazal_1 Kazal-type serine protease inhibitor domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.30 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Wheat Germ Agglutinin (Isolectin 2); domain 1 1omuA00
1YU6C 1CE3A 1CSOI 2NU0I 2KMQA 2F3CI 2N52A 1Z7KB 2NU4I 2NU1I 1R0RI 1OMUA 2KMRA 1CT0I 2N17A 3SGBI 2SGQI 1MT1A 2M5XA 1CT4I 2ARPF 1LR7A 1LR9A 2KCXA 4HGUA 5DAEA 2KMOA 1PPFI 2XRCA 1SGRI 1UUCA 2SGEI 2WCYA 1SGQI 1M8BA 3HH2C 1YTPA 1FYBA 1UVGA 1N13A 1TGSI 1AN1I 1NUBA 1DS3I 3OVOA 4SGBI 1IY5A 1M8CA 1Y1CA 1PJUA 1KMAA 3TJQA 3QTLD 2GKVA 1SGYI 2SGPI 1TUSA 1CGII 1TBRR 1TURA 2P6AC 3SEKC 2SGFI 2KMPA 1HPTA 2NU2I 3SGQI 2JZMA 1SGEI 1OVOA 1IY6A 2SGDI 1UVFA 1HJAI 2N71A 1BUSA 1H0ZA 2JXDA 1SGPI 1DS2I 1TBQR 2LEOA 2JYYA 2B0UC 2QQDA 1IW4A 1OYVI 1CHOI 1PCEA 2ERWA 1TIHA 5JHWC 1LR8A 2OVOA 3B4VC 2BUSA 2GKRI 1HDLA 1Y1BA 1CGJI 2QQCA 2V53A 1BMOA 4OVOA 1OMTA 4GI3C 2GKTI 1SGNI 1SGDI 1CT2I 2NU3I
chains in the Genus database with same CATH superfamily
1YU6C 2K9HA 2E73A 1CE3A 1CSOI 2YUUA 2NU0I 1MJ9A 1K7VA 2OU2A 2ROWA 1WGCA 2KMQA 4WP4A 2F3CI 2N52A 3R5AA 3TO9A 1WKXA 1X4SA 1Z7KB 2NU1I 1KBEA 2NU4I 1R0RI 3GOXA 2JW6A 1Y8FA 2B8TA 1K7TA 1OMUA 4DNCA 2KMRA 3TOAA 1CT0I 2N17A 3SGBI 4A24A 2RIJA 2SGQI 2GVIA 2L8EA 3E2IA 3PDNA 1TOTA 2JA1A 2X3TA 1VDDA 1MT1A 2FNFX 2M5XA 2ORVA 2UVOA 2ELIA 1CT4I 4B6DA 1PTQA 2ARPF 1LR7A 2CWHA 3FSYA 3TOBA 1LR9A 2KCXA 1P9GA 1TBOA 1RFHA 1V1HA 4HGUA 3D00A 4JCVE 3UOEA 5DAEA 2WVJA 1UHAA 5CCMA 3QAHA 1ULNA 2KMOA 4E1RA 1PTRA 5E3PA 1PPFI 2YQPA 3UEJA 1MJAA 1S20A 1K7UA 2Y0MA 3R5CA 3OL0A 2X52A 2XRCA 1SGRI 1UUCA 2SGEI 4UXHA 5E3RA 1TBNA 2ENZA 2WCYA 1ULKA 3MEKA 1SGQI 1FAQA 1ULMA 5J8CA 1M8BA 3HH2C 2E5RA 5HI7A 3UFFA 1V1IA 1YTPA 4AMLA 3BJIA 1NXUA 1WGTA 2OD1A 2L7XA 1UVGA 1N13A 1TGSI 3R5BA 1AN1I 1FYBA 5FUWA 3RU0A 3VDUA 1NUBA 3KY9A 1DS3I 2N1AB 3OVOA 3UEYA 4SGBI 3OXFA 1IY5A 3TO7A 1M8CA 4FKDA 2ENNA 1PJUA 1XA6A 1Y1CA 1KMAA 3TJQA 2UZ3A 2CWGA 3R5DA 5EX3A 3UGDA 3QTLD 2GKVA 1SGYI 2SGPI 2LB7A 4L9MA 1TUSA 1CGII 1TBRR 1TURA 2P6AC 3SEKC 3UGLA 2SGFI 2KMPA 3CXLA 4UXJA 1HPTA 2DKVA 1XX6A 2NU2I 2QQ0A 3OXLA 2WGCA 3SGQI 3FC3A 1Q9BA 3TO6A 2JZMA 1P9ZA 5J8FA 3FSXA 1KBFA 1SGEI 1OVOA 2J9RA 1IY6A 2V1CC 3E59A 1U5KA 3VE5A 1R79A 2A20A 1FARA 1UVFA 1WTJA 1HJAI 2SGDI 2N71A 5FUYA 1XBTA 1BUSA 1H0ZA 2JXDA 2LUYA 2VRWB 4UXIA 1SGPI 3QWPA 1DS2I 1TBQR 2J87A 2QPOA 2LEOA 2JYYA 5E3QA 2ORWA 2W0TA 2CWFA 4MPIA 1FY7A 2OZUA 2B0UC 2RC4A 2QQDA 1IW4A 1OYVI 1MJBA 5FUVA 1CHOI 1PCEA 2ERWA 4E1PA 2PQ8A 1TIHA 5JHWC 2DIPA 1LR8A 2OVOA 3B4VC 5HQ8A 1HEVA 7WGAA 2CJSC 1X74A 2BUSA 2GKRI 1Z2IA 3VDPA 1HDLA 1Y1BA 1CGJI 2QQCA 2V53A 1W3SA 1BMOA 4OVOA 2QQEA 2V1CA 5CCLA 2ODDA 1OMTA 5FUXA 1W4RA 4GI3C 2GKTI 3UGIA 2GIVA 1SGNI 1SGDI 2DB6A 5EX0A 3OXGA 1CT2I 2NU3I 9WGAA
chains in the Genus database with same CATH topology
1YU6C 2K9HA 2E73A 1CE3A 1CSOI 2YUUA 2NU0I 2ROWA 2KMQA 2F3CI 2N52A 1X4SA 1Z7KB 2NU4I 2NU1I 1KBEA 3GOXA 1R0RI 2JW6A 1Y8FA 2B8TA 1OMUA 2KMRA 1CT0I 2N17A 3SGBI 4A24A 2SGQI 2GVIA 2L8EA 3E2IA 3PDNA 1TOTA 2JA1A 1VDDA 1MT1A 2FNFX 2M5XA 2ORVA 2ELIA 1CT4I 4B6DA 1PTQA 2ARPF 1LR7A 1LR9A 2KCXA 1TBOA 1RFHA 1V1HA 4HGUA 3D00A 4JCVE 5DAEA 2WVJA 5CCMA 2KMOA 4E1RA 1PTRA 1PPFI 2YQPA 3UEJA 3OL0A 2XRCA 1SGRI 1UUCA 2SGEI 4UXHA 1TBNA 2ENZA 2WCYA 3MEKA 1SGQI 1FAQA 1M8BA 3HH2C 2E5RA 5HI7A 3UFFA 1V1IA 1YTPA 3BJIA 2OD1A 2L7XA 1UVGA 1N13A 1TGSI 1FYBA 1AN1I 5FUWA 3RU0A 3VDUA 1NUBA 3KY9A 1DS3I 2N1AB 3OVOA 3UEYA 4SGBI 3OXFA 1IY5A 1M8CA 4FKDA 2ENNA 1Y1CA 1XA6A 1PJUA 1KMAA 3TJQA 2UZ3A 3UGDA 5EX3A 3QTLD 2GKVA 1SGYI 2SGPI 4L9MA 1TUSA 1CGII 1TBRR 1TURA 2P6AC 3SEKC 3UGLA 2SGFI 2KMPA 3CXLA 4UXJA 1HPTA 1XX6A 2NU2I 2QQ0A 3OXLA 3SGQI 3FC3A 2JZMA 1KBFA 1SGEI 1OVOA 2J9RA 1IY6A 2V1CC 3E59A 1U5KA 3VE5A 1R79A 2A20A 1FARA 1UVFA 2SGDI 1HJAI 2N71A 5FUYA 1XBTA 1BUSA 1H0ZA 2JXDA 2LUYA 2VRWB 4UXIA 1SGPI 3QWPA 1DS2I 1TBQR 2J87A 2QPOA 2LEOA 2JYYA 2ORWA 2W0TA 2B0UC 2QQDA 1IW4A 1OYVI 5FUVA 1CHOI 1PCEA 2ERWA 4E1PA 1TIHA 5JHWC 2DIPA 1LR8A 2OVOA 3B4VC 5HQ8A 2CJSC 1X74A 2BUSA 2GKRI 3VDPA 1HDLA 1Y1BA 1CGJI 2QQCA 2V53A 1W3SA 1BMOA 4OVOA 2QQEA 2V1CA 5CCLA 2ODDA 1OMTA 5FUXA 1W4RA 4GI3C 2GKTI 3UGIA 1SGNI 1SGDI 2DB6A 5EX0A 3OXGA 1CT2I 2NU3I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YU6 C;  1CE3 A;  1CSO I;  2NU0 I;  2KMQ A;  2F3C I;  2N52 A;  1Z7K B;  2NU4 I;  2NU1 I;  1R0R I;  1OMU A;  2KMR A;  1CT0 I;  2N17 A;  3SGB I;  2SGQ I;  1MT1 A;  2M5X A;  1CT4 I;  2ARP F;  1LR7 A;  1LR9 A;  2KCX A;  4HGU A;  5DAE A;  2KMO A;  1PPF I;  2XRC A;  1SGR I;  1UUC A;  2SGE I;  2WCY A;  1SGQ I;  1M8B A;  3HH2 C;  1YTP A;  1FYB A;  1UVG A;  1N13 A;  1TGS I;  1AN1 I;  1NUB A;  1DS3 I;  3OVO A;  4SGB I;  1IY5 A;  1M8C A;  1Y1C A;  1PJU A;  1KMA A;  3TJQ A;  3QTL D;  2GKV A;  1SGY I;  2SGP I;  1TUS A;  1CGI I;  1TBR R;  1TUR A;  2P6A C;  3SEK C;  2SGF I;  2KMP A;  1HPT A;  2NU2 I;  3SGQ I;  2JZM A;  1SGE I;  1OVO A;  1IY6 A;  2SGD I;  1UVF A;  1HJA I;  2N71 A;  1BUS A;  1H0Z A;  2JXD A;  1SGP I;  1DS2 I;  1TBQ R;  2LEO A;  2JYY A;  2B0U C;  2QQD A;  1IW4 A;  1OYV I;  1CHO I;  1PCE A;  2ERW A;  1TIH A;  5JHW C;  1LR8 A;  2OVO A;  3B4V C;  2BUS A;  2GKR I;  1HDL A;  1Y1B A;  1CGJ I;  2QQC A;  2V53 A;  1BMO A;  4OVO A;  1OMT A;  4GI3 C;  2GKT I;  1SGN I;  1SGD I;  1CT2 I;  2NU3 I; 
#chains in the Genus database with same CATH topology
 1YU6 C;  2K9H A;  2E73 A;  1CE3 A;  1CSO I;  2YUU A;  2NU0 I;  1MJ9 A;  1K7V A;  2OU2 A;  2ROW A;  1WGC A;  2KMQ A;  4WP4 A;  2F3C I;  2N52 A;  3R5A A;  3TO9 A;  1WKX A;  1X4S A;  1Z7K B;  2NU1 I;  1KBE A;  2NU4 I;  1R0R I;  3GOX A;  2JW6 A;  1Y8F A;  2B8T A;  1K7T A;  1OMU A;  4DNC A;  2KMR A;  3TOA A;  1CT0 I;  2N17 A;  3SGB I;  4A24 A;  2RIJ A;  2SGQ I;  2GVI A;  2L8E A;  3E2I A;  3PDN A;  1TOT A;  2JA1 A;  2X3T A;  1VDD A;  1MT1 A;  2FNF X;  2M5X A;  2ORV A;  2UVO A;  2ELI A;  1CT4 I;  4B6D A;  1PTQ A;  2ARP F;  1LR7 A;  2CWH A;  3FSY A;  3TOB A;  1LR9 A;  2KCX A;  1P9G A;  1TBO A;  1RFH A;  1V1H A;  4HGU A;  3D00 A;  4JCV E;  3UOE A;  5DAE A;  2WVJ A;  1UHA A;  5CCM A;  3QAH A;  1ULN A;  2KMO A;  4E1R A;  1PTR A;  5E3P A;  1PPF I;  2YQP A;  3UEJ A;  1MJA A;  1S20 A;  1K7U A;  2Y0M A;  3R5C A;  3OL0 A;  2X52 A;  2XRC A;  1SGR I;  1UUC A;  2SGE I;  4UXH A;  5E3R A;  1TBN A;  2ENZ A;  2WCY A;  1ULK A;  3MEK A;  1SGQ I;  1FAQ A;  1ULM A;  5J8C A;  1M8B A;  3HH2 C;  2E5R A;  5HI7 A;  3UFF A;  1V1I A;  1YTP A;  4AML A;  3BJI A;  1NXU A;  1WGT A;  2OD1 A;  2L7X A;  1UVG A;  1N13 A;  1TGS I;  3R5B A;  1AN1 I;  1FYB A;  5FUW A;  3RU0 A;  3VDU A;  1NUB A;  3KY9 A;  1DS3 I;  2N1A B;  3OVO A;  3UEY A;  4SGB I;  3OXF A;  1IY5 A;  3TO7 A;  1M8C A;  4FKD A;  2ENN A;  1PJU A;  1XA6 A;  1Y1C A;  1KMA A;  3TJQ A;  2UZ3 A;  2CWG A;  3R5D A;  5EX3 A;  3UGD A;  3QTL D;  2GKV A;  1SGY I;  2SGP I;  2LB7 A;  4L9M A;  1TUS A;  1CGI I;  1TBR R;  1TUR A;  2P6A C;  3SEK C;  3UGL A;  2SGF I;  2KMP A;  3CXL A;  4UXJ A;  1HPT A;  2DKV A;  1XX6 A;  2NU2 I;  2QQ0 A;  3OXL A;  2WGC A;  3SGQ I;  3FC3 A;  1Q9B A;  3TO6 A;  2JZM A;  1P9Z A;  5J8F A;  3FSX A;  1KBF A;  1SGE I;  1OVO A;  2J9R A;  1IY6 A;  2V1C C;  3E59 A;  1U5K A;  3VE5 A;  1R79 A;  2A20 A;  1FAR A;  1UVF A;  1WTJ A;  1HJA I;  2SGD I;  2N71 A;  5FUY A;  1XBT A;  1BUS A;  1H0Z A;  2JXD A;  2LUY A;  2VRW B;  4UXI A;  1SGP I;  3QWP A;  1DS2 I;  1TBQ R;  2J87 A;  2QPO A;  2LEO A;  2JYY A;  5E3Q A;  2ORW A;  2W0T A;  2CWF A;  4MPI A;  1FY7 A;  2OZU A;  2B0U C;  2RC4 A;  2QQD A;  1IW4 A;  1OYV I;  1MJB A;  5FUV A;  1CHO I;  1PCE A;  2ERW A;  4E1P A;  2PQ8 A;  1TIH A;  5JHW C;  2DIP A;  1LR8 A;  2OVO A;  3B4V C;  5HQ8 A;  1HEV A;  7WGA A;  2CJS C;  1X74 A;  2BUS A;  2GKR I;  1Z2I A;  3VDP A;  1HDL A;  1Y1B A;  1CGJ I;  2QQC A;  2V53 A;  1W3S A;  1BMO A;  4OVO A;  2QQE A;  2V1C A;  5CCL A;  2ODD A;  1OMT A;  5FUX A;  1W4R A;  4GI3 C;  2GKT I;  3UGI A;  2GIV A;  1SGN I;  1SGD I;  2DB6 A;  5EX0 A;  3OXG A;  1CT2 I;  2NU3 I;  9WGA A; 
#chains in the Genus database with same CATH homology
 1YU6 C;  2K9H A;  2E73 A;  1CE3 A;  1CSO I;  2YUU A;  2NU0 I;  2ROW A;  2KMQ A;  2F3C I;  2N52 A;  1X4S A;  1Z7K B;  2NU4 I;  2NU1 I;  1KBE A;  3GOX A;  1R0R I;  2JW6 A;  1Y8F A;  2B8T A;  1OMU A;  2KMR A;  1CT0 I;  2N17 A;  3SGB I;  4A24 A;  2SGQ I;  2GVI A;  2L8E A;  3E2I A;  3PDN A;  1TOT A;  2JA1 A;  1VDD A;  1MT1 A;  2FNF X;  2M5X A;  2ORV A;  2ELI A;  1CT4 I;  4B6D A;  1PTQ A;  2ARP F;  1LR7 A;  1LR9 A;  2KCX A;  1TBO A;  1RFH A;  1V1H A;  4HGU A;  3D00 A;  4JCV E;  5DAE A;  2WVJ A;  5CCM A;  2KMO A;  4E1R A;  1PTR A;  1PPF I;  2YQP A;  3UEJ A;  3OL0 A;  2XRC A;  1SGR I;  1UUC A;  2SGE I;  4UXH A;  1TBN A;  2ENZ A;  2WCY A;  3MEK A;  1SGQ I;  1FAQ A;  1M8B A;  3HH2 C;  2E5R A;  5HI7 A;  3UFF A;  1V1I A;  1YTP A;  3BJI A;  2OD1 A;  2L7X A;  1UVG A;  1N13 A;  1TGS I;  1FYB A;  1AN1 I;  5FUW A;  3RU0 A;  3VDU A;  1NUB A;  3KY9 A;  1DS3 I;  2N1A B;  3OVO A;  3UEY A;  4SGB I;  3OXF A;  1IY5 A;  1M8C A;  4FKD A;  2ENN A;  1Y1C A;  1XA6 A;  1PJU A;  1KMA A;  3TJQ A;  2UZ3 A;  3UGD A;  5EX3 A;  3QTL D;  2GKV A;  1SGY I;  2SGP I;  4L9M A;  1TUS A;  1CGI I;  1TBR R;  1TUR A;  2P6A C;  3SEK C;  3UGL A;  2SGF I;  2KMP A;  3CXL A;  4UXJ A;  1HPT A;  1XX6 A;  2NU2 I;  2QQ0 A;  3OXL A;  3SGQ I;  3FC3 A;  2JZM A;  1KBF A;  1SGE I;  1OVO A;  2J9R A;  1IY6 A;  2V1C C;  3E59 A;  1U5K A;  3VE5 A;  1R79 A;  2A20 A;  1FAR A;  1UVF A;  2SGD I;  1HJA I;  2N71 A;  5FUY A;  1XBT A;  1BUS A;  1H0Z A;  2JXD A;  2LUY A;  2VRW B;  4UXI A;  1SGP I;  3QWP A;  1DS2 I;  1TBQ R;  2J87 A;  2QPO A;  2LEO A;  2JYY A;  2ORW A;  2W0T A;  2B0U C;  2QQD A;  1IW4 A;  1OYV I;  5FUV A;  1CHO I;  1PCE A;  2ERW A;  4E1P A;  1TIH A;  5JHW C;  2DIP A;  1LR8 A;  2OVO A;  3B4V C;  5HQ8 A;  2CJS C;  1X74 A;  2BUS A;  2GKR I;  3VDP A;  1HDL A;  1Y1B A;  1CGJ I;  2QQC A;  2V53 A;  1W3S A;  1BMO A;  4OVO A;  2QQE A;  2V1C A;  5CCL A;  2ODD A;  1OMT A;  5FUX A;  1W4R A;  4GI3 C;  2GKT I;  3UGI A;  1SGN I;  1SGD I;  2DB6 A;  5EX0 A;  3OXG A;  1CT2 I;  2NU3 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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