1OPEA

Deletion mutant of succinyl-coa:3-ketoacid coa transferase from pig heart
Total Genus 139
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
139
sequence length
475
structure length
453
Chain Sequence
TKFYTDAVEAVKDIPNGATVLVGGFGLCGIPENLIGALLKTGVKELTAVSNNAGVDNFGLGLLLQSKQIKRMISSYVGENAEFERQYLAGELEVELTPQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYIAIASKPREVREFNGQHFILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIERLSVRVRERIIKRAALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKETVTVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIVKGMGGAMDLVSSAKTKVVVTMEHSAHKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Succinyl-CoA:3-ketoacid-coenzyme A transferase
publication title Structure of the CoA transferase from pig heart to 1.7 A resolution.
pubmed doi rcsb
source organism Sus scrofa
molecule tags Transferase
total genus 139
structure length 453
sequence length 475
chains with identical sequence B
ec nomenclature ec 2.8.3.5: 3-oxoacid CoA-transferase.
pdb deposition date 2003-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1opeA01
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1opeA02
3EH7A 1XR4A 3CDKB 3GK7A 1OOZA 5DBNA 3QDQA 2HJ0A 2AHUA 3OXOA 1POIA 5DBNB 1POIB 2OASA 2NRCA 1M3EA 4KGBA 3RRLA 3DLXA 1K6DA 2AHVA 2NRBA 3RRLB 3K6MA 1OOYA 1O9LA 3CDKA 3D3UA 2AHWA 1OPEA
chains in the Genus database with same CATH superfamily
3EH7A 1XR4A 3CDKB 3GK7A 1OOZA 5DBNA 3QDQA 2HJ0A 2AHUA 3OXOA 1POIA 5DBNB 1POIB 2OASA 2NRCA 1M3EA 4KGBA 3RRLA 3DLXA 1K6DA 2AHVA 2NRBA 3RRLB 3K6MA 1OOYA 1O9LA 3CDKA 3D3UA 2AHWA 1OPEA
chains in the Genus database with same CATH topology
3EH7A 1XR4A 3CDKB 3GK7A 1OOZA 5DBNA 3QDQA 2HJ0A 2AHUA 3OXOA 1POIA 5DBNB 1POIB 2OASA 2NRCA 1M3EA 4KGBA 3RRLA 3DLXA 1K6DA 2AHVA 2NRBA 3RRLB 3K6MA 1OOYA 1O9LA 3CDKA 3D3UA 2AHWA 1OPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EH7 A;  1XR4 A;  3CDK B;  3GK7 A;  1OOZ A;  5DBN A;  3QDQ A;  2HJ0 A;  2AHU A;  3OXO A;  1POI A;  5DBN B;  1POI B;  2OAS A;  2NRC A;  1M3E A;  4KGB A;  3RRL A;  3DLX A;  1K6D A;  2AHV A;  2NRB A;  3RRL B;  3K6M A;  1OOY A;  1O9L A;  3CDK A;  3D3U A;  2AHW A;  1OPE A; 
#chains in the Genus database with same CATH topology
 3EH7 A;  1XR4 A;  3CDK B;  3GK7 A;  1OOZ A;  5DBN A;  3QDQ A;  2HJ0 A;  2AHU A;  3OXO A;  1POI A;  5DBN B;  1POI B;  2OAS A;  2NRC A;  1M3E A;  4KGB A;  3RRL A;  3DLX A;  1K6D A;  2AHV A;  2NRB A;  3RRL B;  3K6M A;  1OOY A;  1O9L A;  3CDK A;  3D3U A;  2AHW A;  1OPE A; 
#chains in the Genus database with same CATH homology
 3EH7 A;  1XR4 A;  3CDK B;  3GK7 A;  1OOZ A;  5DBN A;  3QDQ A;  2HJ0 A;  2AHU A;  3OXO A;  1POI A;  5DBN B;  1POI B;  2OAS A;  2NRC A;  1M3E A;  4KGB A;  3RRL A;  3DLX A;  1K6D A;  2AHV A;  2NRB A;  3RRL B;  3K6M A;  1OOY A;  1O9L A;  3CDK A;  3D3U A;  2AHW A;  1OPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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